BAC Information

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BAC

Clone NameB6Ng01-139K21
Chromosome9 (Build37)
Map Location 19,046,156 - 19,165,175
singlet/doubletdoublet
Overlap geneOlfr843, Olfr845, Olfr1522-ps1, Olfr846
Upstream geneLOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1
Downstream geneLOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K21.bB6Ng01-139K21.g
ACCDH938604DH938605
length1,0791,110
definitionDH938604|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K21, 5' end.DH938605|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,046,156 - 19,047,248)(19,164,059 - 19,165,175)
sequence
gaattccatcattatttcaaagatttagtgccaatactcctcaaattatt
ccacaaaatagaaacagagagtgaaaatactctttaaaataattaaaggg
aaaagaagaaaatacttgcaaactgaatccaataattcatcaaagcaata
agcaatcatgataaagtaggtttcagcccagagatgcaggagttattcaa
catatataaacaaataaatgtaatctaccacattaagaaacaacagaaat
ataaatctacatgactatctcattagattgaaaaaagttttttaagaaaa
ttaaatgacactttatgataaaagtcctagagagactaaggatgtaagga
atatatttcagcataatatagaggacctacatgtattccaaatccagcat
caacctaaatgggcaagaatgaataaacaaaagctgggcagtggtggcat
atgtctttaatccaagcacctgtgaggtaggggcagcaaaatctctgagc
tcaaggtcagcctgttttataaaaagtgatttctagacctacaaagcaaa
attctgtttcaattcttccctatatggcccaatcatggacatttgaaggt
aaatggatggaactaaaaaaaaaaaaattaaaccatcttggattaggtaa
caaagactgaataaaaaaggtaaaaagacaaatatgttacatattatttc
atatgtaaatactagctttttagcatttggtaggcatgctacaattcata
taatctcagatggtaaacatagagcaattgactatggaaaaaatctccaa
atgaaggtctgattactcttcttgtctttccacatgactaaatctgaaat
tagcaaaccccaaatgactgggaatacctaacaggactattttgtactta
tatattatattaacccaaaactttgaaaatagagatcaatcttcagtgag
atttttatggagtctacttcttgggttctttgtatatattttaaatgtgg
acagtgataaaaagagaattctcactggaggatactcagatgcagagcac
ctaagaatgtccaacatcttagccatcag
gaattccaatctttggaatcattttctcttatactcgaattgtctcttct
attttgaaaatatcttcccttagaggaaagtacaaagccttttctacttg
tgggtctcacctttcagttgtctcgttattttatggtgcaggagttggag
tttatattagctcttcaattgctgttttccctcagacaactacagtgtca
tatattatgtacacagtgctccctcaaatgttgaacccttttatctatag
cttaaggaataaagatatgaaagaagccttacgaaagctcattgctaagg
aatcaagacttccctgatatttttaagtagttgggacttgaactactcat
gtgtttcatagagacagaattcctggtgagtaagaatgtctgttttgttc
ttgtcttctatatatcatattaaccagaaatctctaaatatattatgtga
tttattagttatttgtttttctgtaatataatgatttcttatcatatttc
atcatatatttttatatgccatacaatcagaaccaactaaaaacttaaaa
atttattaatttcaatatgtatacaaatcaagaaaagtaaatacattaag
aaacataagtcacacatacatacatatatatgttctaattaatatatatt
actaaaaaggatagtcaatggaattaagggagaaaaagtgctgattcatt
gaagtggttggggagagtaaaaagtagttgatataattatattctatatt
caaaatataagaaacatttctaggaaatttatttggtaaaggtgactttt
accagttaggcttatatttatattttttaaattttatttttattctttaa
tccttttatacagtccacacttcattcccctcacagtctgccacctgact
gatccctatccttataactcctccctgtctgcaagagtatgtcttcacat
tcccacccccatgccaccaggcctacctacacctggggcttcaagtcttc
tgcagatagttgcttcttctcttcactgagtcagaccaggtagtctcctg
ctgtgattgtgtcaagggcctcaatcaacggaagtagcgctagtcgttga
tcatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19046156_19047248
seq2: B6Ng01-139K21.b_48_1126

seq1  GAATTCCATCATTATTTCAAAGATTTAGTGCCAATACTCCTCAAATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTATTTCAAAGATTTAGTGCCAATACTCCTCAAATTATT  50

seq1  CCACAAAATAGAAACAGAGAGTGAAAATACTCTTTAAAATAATTAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATAGAAACAGAGAGTGAAAATACTCTTTAAAATAATTAAAGGG  100

seq1  AAAAGAAGAAAATACTTGCAAACTGAATCCAATAATTCATCAAAGCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAAATACTTGCAAACTGAATCCAATAATTCATCAAAGCAATA  150

seq1  AGCAATCATGATAAAGTAGGTTTCAGCCCAGAGATGCAGGAGTTATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATGATAAAGTAGGTTTCAGCCCAGAGATGCAGGAGTTATTCAA  200

seq1  CATATATAAACAAATAAATGTAATCTACCACATTAAGAAACAACAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAACAAATAAATGTAATCTACCACATTAAGAAACAACAGAAAT  250

seq1  ATAAATCTACATGACTATCTCATTAGATTGAAAAAAGTTTTTTAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTACATGACTATCTCATTAGATTGAAAAAAGTTTTTTAAGAAAA  300

seq1  TTAAATGACACTTTATGATAAAAGTCCTAGAGAGACTAAGGATGTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACACTTTATGATAAAAGTCCTAGAGAGACTAAGGATGTAAGGA  350

seq1  ATATATTTCAGCATAATATAGAGGACCTACATGTATTCCAAATCCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCAGCATAATATAGAGGACCTACATGTATTCCAAATCCAGCAT  400

seq1  CAACCTAAATGGGCAAGAATGAATAAACAAAAGCTGGGCAGTGGTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAATGGGCAAGAATGAATAAACAAAAGCTGGGCAGTGGTGGCAT  450

seq1  ATGTCTTTAATCCAAGCACCTGTGAGGTAGGGGCAGCAAAATCTCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTAATCCAAGCACCTGTGAGGTAGGGGCAGCAAAATCTCTGAGC  500

seq1  TCAAGGTCAGCCTGTTTTATAAAAAGTGATTTCTAGACCTACAAAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCAGCCTGTTTTATAAAAAGTGATTTCTAGACCTACAAAGCAAA  550

seq1  ATTCTGTTTCAATTCTTCCCTATATGGCCCAATCATGGACATTTGAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCAATTCTTCCCTATATGGCCCAATCATGGACATTTGAAGGT  600

seq1  AAATGGATGGAACTAAAAAAAAAAAAATTAAACCATCTTGGATTAGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGGAACTAAAAAAAAAAAAATTAAACCATCTTGGATTAGGTAA  650

seq1  CAAAGACTGAATAAAAAAGGTAAAAAGACAAATATGTTACATATTATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTGAATAAAAAAGGTAAAAAGACAAATATGTTACATATTATTTC  700

seq1  ATATGTAAATACTAGCTTTTTAGCATTTGGTAGGCATGCTACAATTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAATACTAGCTTTTTAGCATTTGGTAGGCATGCTACAATTCATA  750

seq1  TAATCTCAGATGGTAAACATAGAGCAATTGACTATGGAAAAAATCTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGATGGTAAACATAGAGCAATTGACTATGGAAAAAATCTCCAA  800

seq1  ATGAAGGTCTGATTACTCTTCTTGTCTTTCCACATGACTAAATCTGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCTGATTACTCTTCTTGTCTTTCCACATGACTAAATCTGAAAT  850

seq1  TAGCAAACCCCAAATGACTGGGAATACCTAACAGGGACTATTTTGTACTT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGCAAACCCCAAATGACTGGGAATACCTAACA-GGACTATTTTGTACTT  899

seq1  ATATTATTATATTAACCCAAAACTTTGAAAATAGAAGATCAATCTTCAGT  950
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATA-TATTATATTAACCCAAAACTTTGAAAATAG-AGATCAATCTTCAGT  947

seq1  GAAGATTTTTATGGAGTCTAACTTCTTGGGTTCTTTGTATATATTTTAAA  1000
      | ||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  G-AGATTTTTATGGAGTCT-ACTTCTTGGGTTCTTTGTATATATTTT-AA  994

seq1  ATGTGGAACAGTGATAAAAAGAGAATTCTCAACTGAGGATACTCAGATGG  1050
      |||||| ||||||||||||||||||||||||   ||||||||||||||| 
seq2  ATGTGG-ACAGTGATAAAAAGAGAATTCTCACTGGAGGATACTCAGATG-  1042

seq1  CCAAGAAGCACCTAAAGAAATGTCCAACATCCTTAGCCATCAG  1093
       ||   |||||||||   |||||||||||| ||||||||||||
seq2  -CA--GAGCACCTAA--GAATGTCCAACAT-CTTAGCCATCAG  1079

seq1: chr9_19164059_19165175
seq2: B6Ng01-139K21.g_68_1177 (reverse)

seq1  TCAGAAAATGATCCAACGACTAGGCAGCATACTTCAGCTGATCTGAGGCC  50
      |||| ||||||| ||||||||||   || |||||| | |||| |||||||
seq2  TCAG-AAATGAT-CAACGACTAG--CGC-TACTTCCGTTGAT-TGAGGCC  44

seq1  CCTGACACATACACAGCAGAGGACTACCTGGTCTGGCCTCAGTG-AGAGA  99
      | |||||||  ||||||||  ||||||||||||| | ||||||| |||||
seq2  CTTGACACAATCACAGCAGGAGACTACCTGGTCT-GACTCAGTGAAGAGA  93

seq1  AGAAGCACCTAATCCTGCAG-AGACTTGAAGCCCCAGGGTGTAGGTAGGC  148
      ||||||| |||   |||||| ||||||||||||||| |||||||||||||
seq2  AGAAGCAACTA--TCTGCAGAAGACTTGAAGCCCCA-GGTGTAGGTAGGC  140

seq1  CTGGTGGCATGGGGGTGGGAATGTGAAGACATACTCTTGCAGACAGGGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGTGGCATGGGGGTGGGAATGTGAAGACATACTCTTGCAGACA-GGGA  189

seq1  GGAGTTAT-AGGATAGGGATCAGTCAGGTGGCAGACTGTGAGGGGAATGA  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATAAGGATAGGGATCAGTCAGGTGGCAGACTGTGAGGGGAATGA  239

seq1  AGTGTGGACTGTATAAAAGGATTAAAGAATAAAAATAAAATTTAAAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACTGTATAAAAGGATTAAAGAATAAAAATAAAATTTAAAAAAT  289

seq1  ATAAATATAAGCCTAACTGGTAAAAGTCACC-TTACCAAATAAATTTCCT  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAATATAAGCCTAACTGGTAAAAGTCACCTTTACCAAATAAATTTCCT  339

seq1  AGAAATGTTTCTTATATTTTGAATATAGAATATAATTATATCAACTACTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTTCTTATATTTTGAATATAGAATATAATTATATCAACTACTT  389

seq1  TTTACTCTCCCCAACCACTTCAATGAATCAGCACTTTTTCTCCCTTAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTCCCCAACCACTTCAATGAATCAGCACTTTTTCTCCCTTAATT  439

seq1  CCATTGACTATCCTTTTTAGTAATATATATTAATTAGAACATATATATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACTATCCTTTTTAGTAATATATATTAATTAGAACATATATATGT  489

seq1  ATGTATGTGTGACTTATGTTTCTTAATGTATTTACTTTTCTTGATTTGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGACTTATGTTTCTTAATGTATTTACTTTTCTTGATTTGTA  539

seq1  TACATATTGAAATTAATAAATTTTTAAGTTTTTAGTTGGTTCTGATTGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGAAATTAATAAATTTTTAAGTTTTTAGTTGGTTCTGATTGTA  589

seq1  TGGCATATAAAAATATATGATGAAATATGATAAGAAATCATTATATTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATAAAAATATATGATGAAATATGATAAGAAATCATTATATTACA  639

seq1  GAAAAACAAATAACTAATAAATCACATAATATATTTAGAGATTTCTGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAATAACTAATAAATCACATAATATATTTAGAGATTTCTGGTT  689

seq1  AATATGATATATAGAAGACAAGAACAAAACAGACATTCTTACTCACCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATATATAGAAGACAAGAACAAAACAGACATTCTTACTCACCAGG  739

seq1  AATTCTGTCTCTATGAAACACATGAGTAGTTCAAGTCCCAACTACTTAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCTCTATGAAACACATGAGTAGTTCAAGTCCCAACTACTTAAA  789

seq1  AATATCAGGGAAGTCTTGATTCCTTAGCAATGAGCTTTCGTAAGGCTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGGGAAGTCTTGATTCCTTAGCAATGAGCTTTCGTAAGGCTTCT  839

seq1  TTCATATCTTTATTCCTTAAGCTATAGATAAAAGGGTTCAACATTTGAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTTTATTCCTTAAGCTATAGATAAAAGGGTTCAACATTTGAGG  889

seq1  GAGCACTGTGTACATAATATATGACACTGTAGTTGTCTGAGGGAAAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGTGTACATAATATATGACACTGTAGTTGTCTGAGGGAAAACAG  939

seq1  CAATTGAAGAGCTAATATAAACTCCAACTCCTGCACCATAAAATAACGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAGAGCTAATATAAACTCCAACTCCTGCACCATAAAATAACGAG  989

seq1  ACAACTGAAAGGTGAGACCCACAAGTAGAAAAGGCTTTGTACTTTCCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAAAGGTGAGACCCACAAGTAGAAAAGGCTTTGTACTTTCCTCT  1039

seq1  AAGGGAAGATATTTTCAAAATAGAAGAGACAATTCGAGTATAAGAGAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGATATTTTCAAAATAGAAGAGACAATTCGAGTATAAGAGAAAA  1089

seq1  TGATTCCAAAGATTGGAATTC  1117
      |||||||||||||||||||||
seq2  TGATTCCAAAGATTGGAATTC  1110