BAC Information

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BAC

Clone NameB6Ng01-139L09
Chromosome9 (Build37)
Map Location 69,703,973 - 69,866,196
singlet/doubletdoublet
Overlap geneBnip2, LOC624164, Gtf2a2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1
Downstream geneGcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L09.bB6Ng01-139L09.g
ACCDH938628DH938629
length1,092898
definitionDH938628|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L09, 5' end.DH938629|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,865,104 - 69,866,196)(69,703,973 - 69,704,869)
sequence
gaattcagtatatagaccagactggcttccaactcaaagagatctgcttc
cagagtgctagaattaaacacatgtacctggctccatttaatatttaaga
ttccatatttcattgtatgtttattttctaaacttataaaagagcagaga
ttttttttttctttttaaacattaagccaaatcctatcactggctcagaa
gtatcactgttgcctattctttaactctatttctatatcagtttttttct
gtgactctgtggtgtcactttagccagaaactagaaaattaccaaatttt
tctctccattttatcatatccatagctgtcaagttccgttagatgtgcct
tttaaagtctctccatttctagccatccacttgtcaaattttatactatt
agagacatgaccccccccccccccccgccccacttctttgagccctggct
atccaagaactcggtctgtagaccaggttggccatagaggcagagaggca
gaggcagagacccaactgcctctgcctccccagtcctatgattagaggtc
tgtgcatttatgcctggctgatacctttttatttgactatttatgcacgt
agtttgtaagtatgtaaaactgataagacatttataataacataaacaca
tatttttaatctcttgagtaaaatataaagtcaaatagagacctcatcta
gtttacctttgcattttcagtacctaaaacaacctaataggcactttaat
acttaaaaaaaattcctttgtactttatcaagaaaatattcttgcctcaa
cactgaggtttttcttaaatgtaaagtaacttcttttcctgtatggcctt
tcaaatgttttaagtttatttctatagtaagggttgccgccttgtaacac
agtgaagatatttagagaaatataacagagtacaacaaatgtttctggta
gcaacttcacatggaaactgttttgcaacattgccatgagtcttaactat
taaaccaacataatactgaggatggtattttgtcaaagcagagataattc
aaaagacagctgctaccagaacgacttttaagacaagctatc
gaattcaaagagtgtccatttctggggctggtgcattctctgtacctgag
ggaatagagccagtcgggtgggggtgggtagccgtggtggcagttcttcc
tcctccgggtaattatctctttgcagtgaataatgggacttcagctttac
gtctgattctttgatgaagatgaaactatttaatcaggtttggttgctca
tctcatcatctcctcacatcacacccttctcgaagagttcattagctgga
agaaaaattgatgacctcgttagttctgcacattggttcacttaggacaa
attggagtttgaggatgttgcttgactctgccatggactgggggacaagc
attcacttctgaactgtttggataaaccatgcccttgatgtcttaggtgg
caaggttgcctggcaaatgtctgatagagttttttttctcatggaaacac
tcctttcggtgcgagggcaggtttgccttccatcatctcttccaatatgt
tatccacataatacacttctgtgaattgagtttgtcaccctccatgactt
gctttgtgtcctcatcctctctttatctagaaagcattctatgatatcac
ccaaagtcactgctgggactttaaataaaaggcccagggtcaggggggac
aaatcaggaccatggacagtaccacaaatcgttcaagctatgacaggtac
tgcatgcagactcttatatgcttgggatccacagaagcaaaatctatggt
gaaatttgggcactgtctaggtgaaatgatcagagttgtctacacaacaa
ccaggtgaggctagatgatagtgatctctacacgatttacggcaccggcc
aggaagaacgcaacaaccggaatcttctgtgggaaagtttattgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69865104_69866196
seq2: B6Ng01-139L09.b_41_1132 (reverse)

seq1  GATAGCTTGTCTTATAAAGTCTGTTCTGGTAGCTGGCTGTCTTTTGGATT  50
      |||||||||||||| |||||| |||||||||||  ||||||||||| |||
seq2  GATAGCTTGTCTTA-AAAGTC-GTTCTGGTAGC-AGCTGTCTTTTGAATT  47

seq1  ATCTCTGCTTTGAACAAAATACCATCCTCACTATTATGGTGGTTT-ATAG  99
      |||||||||||| ||||||||||||||||| ||||||| |||||| ||||
seq2  ATCTCTGCTTTG-ACAAAATACCATCCTCAGTATTATGTTGGTTTAATAG  96

seq1  TTAAGAACTCATGGCAAATGTGGCAAAACAGTTTACCATGTGAAGTCGCT  149
      ||||| ||||||||| ||||| |||||||||||| ||||||||||| |||
seq2  TTAAG-ACTCATGGC-AATGTTGCAAAACAGTTT-CCATGTGAAGTTGCT  143

seq1  A-CAGAAACATTTTGTTGTTACTCTGTTATATTTCTCT-AATATCTTACA  197
      | |||||||| ||||||| ||||||||||||||||||| |||||||| ||
seq2  ACCAGAAACA-TTTGTTG-TACTCTGTTATATTTCTCTAAATATCTT-CA  190

seq1  CTGTGTTACAAGGC-GCAACCC-TACTATAGAAATAAACTTAAAACATAT  245
      |||||||||||||| ||||||| ||||||||||||||||||||||||| |
seq2  CTGTGTTACAAGGCGGCAACCCTTACTATAGAAATAAACTTAAAACATTT  240

seq1  GAAGGCCAATACAGGAAAAG-AGTTACTTTACATTTAAG-AAAACCTCAG  293
      ||| | | |||||||||||| |||||||||||||||||| ||||||||||
seq2  GAAAGGCCATACAGGAAAAGAAGTTACTTTACATTTAAGAAAAACCTCAG  290

seq1  TGTTGAGGCAAGAATATTTTCTTGATAAAGTACAAAGGAATTTTTTTTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGCAAGAATATTTTCTTGATAAAGTACAAAGGAATTTTTTTTAA  340

seq1  GTATTTAAGTGCCTATTAGGTTGTTTTAGGTACTGAAAATGCAAAGGTAA  393
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGTGCCTATTAGGTTGTTTTAGGTACTGAAAATGCAAAGGTAA  390

seq1  ACTAGATGAGGTCTCTATTTGAC-TTATATTTTACTCAAGAGATT-AAAA  441
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ACTAGATGAGGTCTCTATTTGACTTTATATTTTACTCAAGAGATTAAAAA  440

seq1  TATGTGTTTATGTTATTATAAATGTCTTATCAGTTTTACATACTTACAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTATGTTATTATAAATGTCTTATCAGTTTTACATACTTACAAA  490

seq1  CTACGTGCATAAATAGTCAAATAAAAAGGTATCAGCCAGGCATAAATGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGCATAAATAGTCAAATAAAAAGGTATCAGCCAGGCATAAATGCA  540

seq1  CAGACCTCTAATCATAGGACTGGGGAGGCAGAGGCAGTTGGGTCTCTGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCTAATCATAGGACTGGGGAGGCAGAGGCAGTTGGGTCTCTGCC  590

seq1  TCTGCCTCTCTGCCTCTATGGCCAACCTGGTCTACAGACCGAGTTCTTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCTGCCTCTATGGCCAACCTGGTCTACAGACCGAGTTCTTGG  640

seq1  ATAGCCAGGGCTCAAAGAAGTGGGGCGGGGGGGGGGGGGGGGTCATGTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGGGCTCAAAGAAGTGGGGCGGGGGGGGGGGGGGGGTCATGTCT  690

seq1  CTAATAGTATAAAATTTGACAAGTGGATGGCTAGAAATGGAGAGACTTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTATAAAATTTGACAAGTGGATGGCTAGAAATGGAGAGACTTTA  740

seq1  AAAGGCACATCTAACGGAACTTGACAGCTATGGATATGATAAAATGGAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACATCTAACGGAACTTGACAGCTATGGATATGATAAAATGGAGA  790

seq1  GAAAAATTTGGTAATTTTCTAGTTTCTGGCTAAAGTGACACCACAGAGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTGGTAATTTTCTAGTTTCTGGCTAAAGTGACACCACAGAGTC  840

seq1  ACAGAAAAAAACTGATATAGAAATAGAGTTAAAGAATAGGCAACAGTGAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAAACTGATATAGAAATAGAGTTAAAGAATAGGCAACAGTGAT  890

seq1  ACTTCTGAGCCAGTGATAGGATTTGGCTTAATGTTTAAAAAGAAAAAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGCCAGTGATAGGATTTGGCTTAATGTTTAAAAAGAAAAAAAA  940

seq1  AATCTCTGCTCTTTTATAAGTTTAGAAAATAAACATACAATGAAATATGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGCTCTTTTATAAGTTTAGAAAATAAACATACAATGAAATATGG  990

seq1  AATCTTAAATATTAAATGGAGCCAGGTACATGTGTTTAATTCTAGCACTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAATATTAAATGGAGCCAGGTACATGTGTTTAATTCTAGCACTC  1040

seq1  TGGAAGCAGATCTCTTTGAGTTGGAAGCCAGTCTGGTCTATATACTGAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAGATCTCTTTGAGTTGGAAGCCAGTCTGGTCTATATACTGAAT  1090

seq1  TC  1093
      ||
seq2  TC  1092

seq1: chr9_69703973_69704869
seq2: B6Ng01-139L09.g_70_967

seq1  GAATTCAAAGAGTGTCCATTTCTGGGGCTGGTGCATTCTCTGTACCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGTGTCCATTTCTGGGGCTGGTGCATTCTCTGTACCTGAG  50

seq1  GGAATAGAGCCAGTCGGGTGGGGGTGGGTAGCCGTGGTGGCAGTTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAGCCAGTCGGGTGGGGGTGGGTAGCCGTGGTGGCAGTTCTTCC  100

seq1  TCCTCCGGGTAATTATCTCTTTGCAGTGAATAATGGGACTTCAGCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGGGTAATTATCTCTTTGCAGTGAATAATGGGACTTCAGCTTTAC  150

seq1  GTCTGATTCTTTGATGAAGATGAAACTATTTAATCAGGTTTGGTTGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTCTTTGATGAAGATGAAACTATTTAATCAGGTTTGGTTGCTCA  200

seq1  TCTCATCATCTCCTCACATCACACCCTTCTCGAAGAGTTCATTAGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCATCTCCTCACATCACACCCTTCTCGAAGAGTTCATTAGCTGGA  250

seq1  AGAAAAATTGATGACCTCGTTAGTTCTGCACATTGGTTCACTTAGGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTGATGACCTCGTTAGTTCTGCACATTGGTTCACTTAGGACAA  300

seq1  ATTGGAGTTTGAGGATGTTGCTTGACTCTGCCATGGACTGGGGGACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTTTGAGGATGTTGCTTGACTCTGCCATGGACTGGGGGACAAGC  350

seq1  ATTCACTTCTGAACTGTTTGGATAAACCATGCCCTTGATGTCTTAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTCTGAACTGTTTGGATAAACCATGCCCTTGATGTCTTAGGTGG  400

seq1  CAAGGTTGCCTGGCAAATGTCTGATAGAGTTTTTTTTCTCATGGAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGCCTGGCAAATGTCTGATAGAGTTTTTTTTCTCATGGAAACAC  450

seq1  TCCTTTCGGTGCGAGGGCAGGTTTGCCTTCCATCATCTCTTCCAATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCGGTGCGAGGGCAGGTTTGCCTTCCATCATCTCTTCCAATATGT  500

seq1  TATCCACATAATACACTTCTGTGAATTGAGTTTGTCACCCTCCATGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACATAATACACTTCTGTGAATTGAGTTTGTCACCCTCCATGACTT  550

seq1  GCTTTGTGTCCTCATCCTCTCTTTATCTAGAAAGCATTCTATGATATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTCCTCATCCTCTCTTTATCTAGAAAGCATTCTATGATATCAC  600

seq1  CC-AAGTCACTGCTGGGAC-TTCAATAAAAGGCCCAGGGTCA-GGGGGAC  647
      || |||||||||||||||| || ||||||||||||||||||| |||||||
seq2  CCAAAGTCACTGCTGGGACTTTAAATAAAAGGCCCAGGGTCAGGGGGGAC  650

seq1  AAATCAGGACCATGGACAGTACCACAAATCGTTCAAGCTATGACAGGTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGACCATGGACAGTACCACAAATCGTTCAAGCTATGACAGGTAC  700

seq1  TGCATGCAGACTCTTATATGCTT-GGATCCACAGAAGCAAAATCTATGGT  746
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCATGCAGACTCTTATATGCTTGGGATCCACAGAAGCAAAATCTATGGT  750

seq1  GAAATTT-GGCACTGTCTAGGTGAAATGATCAGAGTTGTCTACACAACAA  795
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGGGCACTGTCTAGGTGAAATGATCAGAGTTGTCTACACAACAA  800

seq1  CCAGGTGAGGCTAGATGATAGTGATCTCTTACACGCATTCACGCGACCGG  845
      |||||||||||||||||||||||||||| |||||| ||| |||  |||||
seq2  CCAGGTGAGGCTAGATGATAGTGATCTC-TACACG-ATTTACGGCACCGG  848

seq1  CCAGGAAGAACGCAACAAACCGGAATCTTCTGCGGCAAAGCTTTATTGCT  895
      |||||||||||||||| ||||||||||||||| || |||| |||||||||
seq2  CCAGGAAGAACGCAAC-AACCGGAATCTTCTGTGGGAAAG-TTTATTGCT  896

seq1  TA  897
      ||
seq2  TA  898