BAC Information

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BAC

Clone NameB6Ng01-139O09
Chromosome9 (Build37)
Map Location 45,950,337 - 46,100,120
singlet/doubletdoublet
Overlap geneBC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13
Upstream geneScn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik
Downstream gene4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139O09.bB6Ng01-139O09.g
ACCDH938766DH938767
length1,146599
definitionDH938766|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O09, 5' end.DH938767|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,098,960 - 46,100,120)(45,950,337 - 45,950,935)
sequence
gaattctctcctatactgagagcccacagcgctgccctggaggactccct
ctttgtagcagccccagaatccggacgggtagcttgaaccaaccatctca
ggagactgtgcacctgaggctcgccccgtatcagctcccagaaatgcaag
gcagaggctggctcaggtcttgcagtctagctttgtgctcaggggcgccc
ttaccctttcccccactgggcatatagctcatctcgctctgagtctttct
ctgcttttctcctctgttccaagcgctctagcttcaaattcctcttccga
ccagacttgtctcgaaatacagtttcagtgaattcaaactgtgctatgaa
ggaaaaaacacattttaaagatacacaccaggcatcacagtcagaaatca
cattctagcactagaaaccaactgcttgggatcttttgctgaaagaactc
tgcagacagaccatcctaccagcactctttcacatactgggaaggaaagg
agtgcttgtactactgaggtaaggtacataaaagcaaggaagtttccgat
agcaaatacaagccacattaacaacagaaaagagagctataggaccttca
gtggcccctgcaagctcacaattgtacctccgaggtctgtggtgtcctgg
tcttgtttcttgagttcctggtgctcccgctgaacatcagtgaccaaccc
agtttttgctccggaatacatgtgtgcagtctgtgcaagagaaaaggaat
acatgtgtacagcctatgcaaggggaatacacgtgtgcagtctgtgcaag
agaagaggcaacagcaacaccattttttcaggaggcagatagctgctcca
gtgcctgactgttagctataaccaaaccaaaacctctagttttatattct
cagtattgaccacaaacagggctcacaacatagaaatgggaatatctaat
cttcaaagaacactttatgggtatcaaattttaaagtaaaagaaacacaa
acatgggcacatagaaggagtaagaatttgcatgacttcctctttgtctt
tttaaaaaaaaggatagaggtcccgtacaggacaggctgcttggactcac
tatggcacatttgaaggcaaaagctgaattgaaggaaataatttct
gaattcccacaaaccaatttatttatgccatggagcattcaaggactgcc
agtagggcaggcagtggtgagggcaaaattgtgtaaccattgaatgctac
accgtgaggtccatgttccattgagaacttttatcttgttaaattctaga
tcttcagggacattaacatagcacatactgtgtgccagcttgctgtcacc
tttaaaacatatgttattttaaccacatacattctttgtatccttctaaa
caaaactagtattctcccatcaaactggttcattattattattattatta
ttattattattattaattattgttattattagactatgaagactagtact
ctgctcagactttacattggaggcagataaccacaccactgtgcttatct
gatcactgatcaaacaaataggagccatttcctccccagttaattcctca
tttgttagtctgtagttttgctttcttaatatcatacatagctagtttat
gtttgtaatctgtacaggatgcctgcagaagccactgtgcatttccctca
gagcgccattggctctcttctcttctcttctcttctcttctcttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46098960_46100120
seq2: B6Ng01-139O09.b_46_1191 (reverse)

seq1  AGAAATTATATTCCTCTAAATGTCAGCTTTTTGCTTTTTAAAATGTGCAT  50
      ||||||||| ||||| | ||| |||||||||  |   || ||||||||  
seq2  AGAAATTAT-TTCCT-TCAAT-TCAGCTTTTGCC---TTCAAATGTGCCA  44

seq1  AAGTGAGTTCAAAGCCAGCCTGTGCTGTAGGGGA-CTCTATCTTTTTTTT  99
       ||||||| |||   |||||||| ||||| |||| ||||||| |||||||
seq2  TAGTGAGTCCAA--GCAGCCTGTCCTGTACGGGACCTCTATCCTTTTTTT  92

seq1  TTAAAAAAAAAAAAAAAAAAGA-GAAGTCATGCAAATTCTTACTCCCTTC  148
      |        ||||| | ||||| ||||||||||||||||||||| |||||
seq2  T--------AAAAAGACAAAGAGGAAGTCATGCAAATTCTTACT-CCTTC  133

seq1  TATGTGCCCCATGTTTGTGTTTCTGTTTACTTTAAAATTTGATA-CCATA  197
      |||||| ||||||||||||||||| ||||||||||||||||||| |||||
seq2  TATGTG-CCCATGTTTGTGTTTCT-TTTACTTTAAAATTTGATACCCATA  181

seq1  AAGTGTTCTATG-AGATTAGATATTTCCCATTCTATGTTGTGAGCCCTGT  246
      ||||||||| || |||||||||||| ||  ||||||||||||||||||||
seq2  AAGTGTTCTTTGAAGATTAGATATTCCCATTTCTATGTTGTGAGCCCTGT  231

seq1  TTGTGGTCAATACTGAGAATATAAAACTAGAGGTTTTGGTTTGGTTATAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCAATACTGAGAATATAAAACTAGAGGTTTTGGTTTGGTTATAG  281

seq1  CTAACAGTCAGGCACTGGAGCAGCTATCTGCCTCCTGGAAAAATGGTGTT  346
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAACAGTCAGGCACTGGAGCAGCTATCTGCCTCCTGAAAAAATGGTGTT  331

seq1  GCTGTTGCCTCTTCTCTTGCACAGACTGCACACGTGTATTCCCCTTGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGCCTCTTCTCTTGCACAGACTGCACACGTGTATTCCCCTTGCAT  381

seq1  AGGCTGTACACATGTATTCCTTTTCTCTTGCACAGACTGCACACATGTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTACACATGTATTCCTTTTCTCTTGCACAGACTGCACACATGTAT  431

seq1  TCCGGAGCAAAAACTGGGTTGGTCACTGATGTTCAGCGGGAGCACCAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGCAAAAACTGGGTTGGTCACTGATGTTCAGCGGGAGCACCAGGA  481

seq1  ACTCAAGAAACAAGACCAGGACACCACAGACCTCGGAGGTACAATTGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAACAAGACCAGGACACCACAGACCTCGGAGGTACAATTGTGA  531

seq1  GCTTGCAGGGGCCACTGAAGGTCCTATAGCTCTCTTTTCTGTTGTTAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGGGGCCACTGAAGGTCCTATAGCTCTCTTTTCTGTTGTTAATG  581

seq1  TGGCTTGTATTTGCTATCGGAAACTTCCTTGCTTTTATGTACCTTACCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTATTTGCTATCGGAAACTTCCTTGCTTTTATGTACCTTACCTC  631

seq1  AGTAGTACAAGCACTCCTTTCCTTCCCAGTATGTGAAAGAGTGCTGGTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTACAAGCACTCCTTTCCTTCCCAGTATGTGAAAGAGTGCTGGTAG  681

seq1  GATGGTCTGTCTGCAGAGTTCTTTCAGCAAAAGATCCCAAGCAGTTGGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTGTCTGCAGAGTTCTTTCAGCAAAAGATCCCAAGCAGTTGGTT  731

seq1  TCTAGTGCTAGAATGTGATTTCTGACTGTGATGCCTGGTGTGTATCTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCTAGAATGTGATTTCTGACTGTGATGCCTGGTGTGTATCTTTA  781

seq1  AAATGTGTTTTTTCCTTCATAGCACAGTTTGAATTCACTGAAACTGTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTTTTTCCTTCATAGCACAGTTTGAATTCACTGAAACTGTATT  831

seq1  TCGAGACAAGTCTGGTCGGAAGAGGAATTTGAAGCTAGAGCGCTTGGAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAAGTCTGGTCGGAAGAGGAATTTGAAGCTAGAGCGCTTGGAAC  881

seq1  AGAGGAGAAAAGCAGAGAAAGACTCAGAGCGAGATGAGCTATATGCCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAAAGCAGAGAAAGACTCAGAGCGAGATGAGCTATATGCCCAG  931

seq1  TGGGGGAAAGGGTAAGGGCGCCCCTGAGCACAAAGCTAGACTGCAAGACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAAGGGTAAGGGCGCCCCTGAGCACAAAGCTAGACTGCAAGACC  981

seq1  TGAGCCAGCCTCTGCCTTGCATTTCTGGGAGCTGATACGGGGCGAGCCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCCTCTGCCTTGCATTTCTGGGAGCTGATACGGGGCGAGCCTC  1031

seq1  AGGTGCACAGTCTCCTGAGATGGTTGGTTCAAGCTACCCGTCCGGATTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACAGTCTCCTGAGATGGTTGGTTCAAGCTACCCGTCCGGATTCT  1081

seq1  GGGGCTGCTACAAAGAGGGAGTCCTCCAGGGCAGCGCTGTGGGCTCTCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTACAAAGAGGGAGTCCTCCAGGGCAGCGCTGTGGGCTCTCAG  1131

seq1  TATAGGAGAGAATTC  1161
      |||||||||||||||
seq2  TATAGGAGAGAATTC  1146

seq1: chr9_45950337_45950935
seq2: B6Ng01-139O09.g_69_667

seq1  GAATTCCCACAAACCAATTTATTTATGCCATGGAGCATTCAAGGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAAACCAATTTATTTATGCCATGGAGCATTCAAGGACTGCC  50

seq1  AGTAGGGCAGGCAGTGGTGAGGGCAAAATTGTGTAACCATTGAATGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCAGGCAGTGGTGAGGGCAAAATTGTGTAACCATTGAATGCTAC  100

seq1  ACCGTGAGGTCCATGTTCCATTGAGAACTTTTATCTTGTTAAATTCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAGGTCCATGTTCCATTGAGAACTTTTATCTTGTTAAATTCTAGA  150

seq1  TCTTCAGGGACATTAACATAGCACATACTGTGTGCCAGCTTGCTGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGGACATTAACATAGCACATACTGTGTGCCAGCTTGCTGTCACC  200

seq1  TTTAAAACATATGTTATTTTAACCACATACATTCTTTGTATCCTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATATGTTATTTTAACCACATACATTCTTTGTATCCTTCTAAA  250

seq1  CAAAACTAGTATTCTCCCATCAAACTGGTTCATTATTATTATTATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGTATTCTCCCATCAAACTGGTTCATTATTATTATTATTATTA  300

seq1  TTATTATTATTATTAATTATTGTTATTATTAGACTATGAAGACTAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTAATTATTGTTATTATTAGACTATGAAGACTAGTACT  350

seq1  CTGCTCAGACTTTACATTGGAGGCAGATAACCACACCACTGTGCTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGACTTTACATTGGAGGCAGATAACCACACCACTGTGCTTATCT  400

seq1  GATCACTGATCAAACAAATAGGAGCCATTTCCTCCCCAGTTAATTCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGATCAAACAAATAGGAGCCATTTCCTCCCCAGTTAATTCCTCA  450

seq1  TTTGTTAGTCTGTAGTTTTGCTTTCTTAATATCATACATAGCTAGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTCTGTAGTTTTGCTTTCTTAATATCATACATAGCTAGTTTAT  500

seq1  GTTTGTAATCTGTACAGGATGCCTGCAGAAGCCACTGTGCATTTCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAATCTGTACAGGATGCCTGCAGAAGCCACTGTGCATTTCCCTCA  550

seq1  GAGCGCCATTGGCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT  599
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCATTGGCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT  599