BAC Information

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BAC

Clone NameB6Ng01-140F17
Chromosome9 (Build37)
Map Location 101,509,354 - 101,510,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140F17.bB6Ng01-140F17.g
ACCDH939109DH939110
length1,155490
definitionDH939109|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F17, 5' end.DH939110|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaagcttggacttgggcctcttctgcaagggggtctggagtgc
ctttgctcctgttctcttatctttgtttatttcttttccaatagtgaaac
tgcttgctcacaaagccctgcaaggtatgcacaaggagcacaaagcaagg
atgagcggtacctccctctgtgtgttatcatggtgctgacctcatttaga
gagcaggcggggttttcttgggctccagggcagatggcatgtggtaatcg
gtggctgtcctcacagtttcatcttcagggaccacagtggttcataggct
tctgatgttgtctgcatggtacccaggcccccatcaaagcctgcttcctt
tgcccggtgctcacagctcattgtccaccagctcgtgtaggagagattgg
gcatcagggtttgagaacgtagtcctccagtgctttcttcatgtgcgacc
tcatctctagtcacaaggccacacacaggagaccagagaacacagataag
tgctcagccacacccacctctccctgccagttctctgggattttatagaa
actgcacactctttagtattgactgtgagaagaacagctgcctctgcctg
agtttggtgacagtacaggtcacgaacagcaggcctaaccctgctgtcag
gaccctgaccgcccctatgaacataaggcaggtggtgagagactatcaga
catcaccgttgccttaggggctgactgtggcatccagggctctgcatcac
ctccccaatgcaagggggaggctgtcctcttatttgccacagaggtgcca
ctaacctccctgaagttactctcatgatattgcttacttgtttattttga
gacagagtttccatccatagcccagattagccttgaataatcctcctgcc
tctgccttcctagccctgggattgcagctgtgcactaccatatctggcta
acgtttggtttaaatttttccatttacccttgcatgctttgaaactatct
actgtctcttctttctctcaatctcggcttttgtgctttctttcccttca
gaagtgagtctgatgaccaggtctgtctgggctcctcctaactcacaaga
tttcctgtagcatgtcttgattcgcgaactgactttattctgaagagctg
ggcca

tttatataatttgggcaaaaatattttatatggtatttcaattgcacaaa
tatccaattgcatcaaaatccatggatttcttaacataatgcttcaaaga
aatattttttatattaatgaaatccaatttagttttatggttcatgtttt
tatactgtaatgtaaccttaggtaatttctctcactatattctaaaaatt
ttactgttttctcttttatagttaggtctctggtgcaccttgaattaatg
tttatatactatatgaattgagggtcaagattcatcgcttgagtatgggc
gtttagttatgccacgatctcctataaaaatttattattttacattgaac
tatctgactcctttgtttgaaactaatcattggtgggggtggggagaggt
tctttctcgtgctcccttcagctttattgatatttatttatgccatttat
ttatctgagtaccatgtttttgtttgttacagctttatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101509354_101510534
seq2: B6Ng01-140F17.b_47_1201

seq1  GAATTCCAAAGCTTGGACTTGGGCCTCTTCTGCAAGGGGGTCTGGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCTTGGACTTGGGCCTCTTCTGCAAGGGGGTCTGGAGTGC  50

seq1  CTTTGCTCCTGTTCTCTTATCTTTGTTTATTTCTTTTCCAATAGTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCCTGTTCTCTTATCTTTGTTTATTTCTTTTCCAATAGTGAAAC  100

seq1  TGCTTGCTCACAAAGCCCTGCAAGGTATGCACAAGGAGCACAAAGCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCACAAAGCCCTGCAAGGTATGCACAAGGAGCACAAAGCAAGG  150

seq1  ATGAGCGGTACCTCCCTCTGTGTGTTATCATGGTGCTGACCTCATTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGGTACCTCCCTCTGTGTGTTATCATGGTGCTGACCTCATTTAGA  200

seq1  GAGCAGGCGGGGTTTTCTTGGGCTCCAGGGCAGATGGCATGTGGTAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCGGGGTTTTCTTGGGCTCCAGGGCAGATGGCATGTGGTAATCG  250

seq1  GTGGCTGTCCTCACAGTTTCATCTTCAGGGACCACAGTGGTTCATAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCCTCACAGTTTCATCTTCAGGGACCACAGTGGTTCATAGGCT  300

seq1  TCTGATGTTGTCTGCATGGTACCCAGGCCCCCATCAAAGCCTGCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTGTCTGCATGGTACCCAGGCCCCCATCAAAGCCTGCTTCCTT  350

seq1  TGCCCGGTGCTCACAGCTCATTGTCCACCAGCTCGTGTAGGAGAGATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGTGCTCACAGCTCATTGTCCACCAGCTCGTGTAGGAGAGATTGG  400

seq1  GCATCAGGGTTTGAGAACGTAGTCCTCCAGTGCTTTCTTCATGTGCGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGGTTTGAGAACGTAGTCCTCCAGTGCTTTCTTCATGTGCGACC  450

seq1  TCATCTCTAGTCACAAGGCCACACACAGGAGACCAGAGAACACAGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAGTCACAAGGCCACACACAGGAGACCAGAGAACACAGATAAG  500

seq1  TGCTCAGCCACACCCACCTCTCCCTGCCAGTTCTCTGGGATTTTATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCACACCCACCTCTCCCTGCCAGTTCTCTGGGATTTTATAGAA  550

seq1  ACTGCACACTCTTTAGTATTGACTGTGAGAAGAACAGCTGCCTCTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACACTCTTTAGTATTGACTGTGAGAAGAACAGCTGCCTCTGCCTG  600

seq1  AGTTTGGTGACAGTACAGGTCACGAACAGCAGGCCTAACCCTGCTGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTGACAGTACAGGTCACGAACAGCAGGCCTAACCCTGCTGTCAG  650

seq1  GACCCTGACCGCCCCTATGAACATAAGGCAGGTGGTGAGAGACTATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACCGCCCCTATGAACATAAGGCAGGTGGTGAGAGACTATCAGA  700

seq1  CATCACCGTTGCCTTAGGGGCTGACTGTGGCATCCAGGGCTCTGCATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCGTTGCCTTAGGGGCTGACTGTGGCATCCAGGGCTCTGCATCAC  750

seq1  CTCCCCAATGCAAGGGGGAGGCTGTCCTCTTATTTGCCACAGAGGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAATGCAAGGGGGAGGCTGTCCTCTTATTTGCCACAGAGGTGCCA  800

seq1  CTAACCTCCCTGAAGTTACTCTCATGATATTGCTTACTTGTTTATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCCCTGAAGTTACTCTCATGATATTGCTTACTTGTTTATTTTGA  850

seq1  GACAGAGTTTCCATCCATAGCCCAGATTAGCCTTGAATAATCCTCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTTCCATCCATAGCCCAGATTAGCCTTGAATAATCCTCCTGCC  900

seq1  TCTGCCTTCCTAGCCCTGGGATTGCAGCTGTGCACTACCATATCTGGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCTAGCCCTGGGATTGCAGCTGTGCACTACCATATCTGGCTA  950

seq1  ACGTTTGGTTTTAAATTTTTCCATTTACCCTTGCAATGCTTTGAAACTAT  1000
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ACGTTTGG-TTTAAATTTTTCCATTTACCCTTGC-ATGCTTTGAAACTAT  998

seq1  CTACTGT-TCTTCTTTCTCTTCTCTCAAATCTCGGCTTTTGTGCTATCTT  1049
      ||||||| ||||||||||||       |||||||||||||||||| || |
seq2  CTACTGTCTCTTCTTTCTCT------CAATCTCGGCTTTTGTGCTTTC-T  1041

seq1  TTCCCTTCCAGAAGTTGAGTCTGGATGACCCAGGGTCTGTCCCTGGGCCT  1099
      ||||||| |||||| ||||||| |||||||   |||||||  ||||| ||
seq2  TTCCCTT-CAGAAG-TGAGTCT-GATGACC--AGGTCTGT--CTGGG-CT  1083

seq1  CCTCCCCTAAACTCACCAAGATTTCCCTGTAGCAATGTCTTGATCCGCAG  1149
      |||||    |||||| |||||||| |||||||| |||||||||| |||  
seq2  CCTCC---TAACTCA-CAAGATTT-CCTGTAGC-ATGTCTTGATTCGCGA  1127

seq1  ACTGAACTCTTATTCTGAAGAGCCCTGGGCCA  1181
      |||| ||| |||||||||||||  ||||||||
seq2  ACTG-ACT-TTATTCTGAAGAG--CTGGGCCA  1155


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