BAC Information

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BAC

Clone NameB6Ng01-140G18
Chromosome9 (Build37)
Map Location 119,914,149 - 120,030,074
singlet/doubletdoublet
Overlap geneCmya1, Cx3cr1, Ccr8, Slc25a38
Upstream geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
Downstream geneRpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G18.bB6Ng01-140G18.g
ACCDH939157DH939158
length1,050153
definitionDH939157|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G18, 5' end.DH939158|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,029,016 - 120,030,074)(119,914,149 - 119,914,301)
sequence
gaattctagcacctagccctaaagtggctccattcctaaagctgctaaga
gtgccccagagaaaaaggcaaaaaccccgtggctctggcactcctctgac
tactcttacctgtgccgtgcagcactgcggtcctggtctgactgtaaaac
atcaggtagagccctgagaagggggcatcacggaggagagttgctgtcag
gcccctgaagaggccacggtggccctcgctgcagtagatgctcctcaggg
ctgcatagatgctctcatagctgtaagtcccactctgcaaagggagggca
gagttagtgcctggcacaggccagcatctgagcagtggcctaagcagact
ttgtgttacataccaggcaagccaccacagctttggtgcacatatatatg
gcttgccctgcctacaaaagtgagtgatctgaacatacgtgactaagtca
gactacacacctgggctgacaccagtgctcactactcagaaccccaaggt
tctagacctatggaactcacctcatagcgtgtcttgatcactgtgatggg
tgacatgcagactcctgccacagagcgggagcccatgcccaggatgaccg
actccagggcggtgggaggatggcctcgcaagaaatactgcttcgaagaa
tacagggtgccaaagtagatccccactccagggacacatctcacaatgga
ctgcaggggaggcagagggaagagggggatcaaagactcgaaactgcaaa
agagtgcactctctggagaggggtctctagagatcccaggtgatccacaa
gcaagatgtttacgggtgaagggagcgccagtgagagagagaggcagagg
caggacaggcagcagtcagtaaagagtgcattaaggcagttacagctgtg
ggtgagttagaccccagcccccaagctctagcaatcagtaaacaccccac
cctctgggatctcctgctgagggaaggtgtagtttaaacatcactttcat
cttctaatggctgagctgctgtgggaggttgaaaccatgcctttggactt

actctgtagatctgggtggcctcgaattcacctaccgctgccttcactga
tatgaatggtaaaggtttgtctggctaatactcctgtcagagctcattat
ttcaacagtctgatagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120029016_120030074
seq2: B6Ng01-140G18.b_48_1097 (reverse)

seq1  AAGTCCCAAGGCATTGGTTTCCACCCTCCCCACAGCAGCCTCCAGCCATT  50
      |||||| |||||| ||||||| |||   |||||||||||   ||||||||
seq2  AAGTCCAAAGGCA-TGGTTTCAACC--TCCCACAGCAGC--TCAGCCATT  45

seq1  AGAAGATGGAAAGTGATGTTTAAACTACACCCTTCCCTCAGCAGGGAGAT  100
      ||||||| ||||||||||||||||||||| ||||||||||||| ||||||
seq2  AGAAGAT-GAAAGTGATGTTTAAACTACA-CCTTCCCTCAGCA-GGAGAT  92

seq1  CCCAGAGGGTGGGGTGTTTACTGATTGCTAGAGCTTGGGGGGCTGGGGTC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCAGAGGGTGGGGTGTTTACTGATTGCTAGAGCTT-GGGGGCTGGGGTC  141

seq1  TAACTCACCCACAGCTGTAACTGCCTTAATGCACTCTTTACTGACTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACCCACAGCTGTAACTGCCTTAATGCACTCTTTACTGACTGCTG  191

seq1  CCTGTCCTGCCTCTGCCTCTCTCTCTCACTGGCGCTCCCTTCACCCGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGCCTCTGCCTCTCTCTCTCACTGGCGCTCCCTTCACCCGTAA  241

seq1  ACATCTTGCTTGTGGATCACCTGGGATCTCTAGAGACCCCTCTCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGCTTGTGGATCACCTGGGATCTCTAGAGACCCCTCTCCAGAGA  291

seq1  GTGCACTCTTTTGCAGTTTCGAGTCTTTGATCCCCCTCTTCCCTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTCTTTTGCAGTTTCGAGTCTTTGATCCCCCTCTTCCCTCTGCCT  341

seq1  CCCCTGCAGTCCATTGTGAGATGTGTCCCTGGAGTGGGGATCTACTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGTCCATTGTGAGATGTGTCCCTGGAGTGGGGATCTACTTTGG  391

seq1  CACCCTGTATTCTTCGAAGCAGTATTTCTTGCGAGGCCATCCTCCCACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTATTCTTCGAAGCAGTATTTCTTGCGAGGCCATCCTCCCACCG  441

seq1  CCCTGGAGTCGGTCATCCTGGGCATGGGCTCCCGCTCTGTGGCAGGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTCGGTCATCCTGGGCATGGGCTCCCGCTCTGTGGCAGGAGTC  491

seq1  TGCATGTCACCCATCACAGTGATCAAGACACGCTATGAGGTGAGTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCACCCATCACAGTGATCAAGACACGCTATGAGGTGAGTTCCAT  541

seq1  AGGTCTAGAACCTTGGGGTTCTGAGTAGTGAGCACTGGTGTCAGCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAGAACCTTGGGGTTCTGAGTAGTGAGCACTGGTGTCAGCCCAGG  591

seq1  TGTGTAGTCTGACTTAGTCACGTATGTTCAGATCACTCACTTTTGTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTCTGACTTAGTCACGTATGTTCAGATCACTCACTTTTGTAGGC  641

seq1  AGGGCAAGCCATATATATGTGCACCAAAGCTGTGGTGGCTTGCCTGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGCCATATATATGTGCACCAAAGCTGTGGTGGCTTGCCTGGTAT  691

seq1  GTAACACAAAGTCTGCTTAGGCCACTGCTCAGATGCTGGCCTGTGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACAAAGTCTGCTTAGGCCACTGCTCAGATGCTGGCCTGTGCCAGG  741

seq1  CACTAACTCTGCCCTCCCTTTGCAGAGTGGGACTTACAGCTATGAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTCTGCCCTCCCTTTGCAGAGTGGGACTTACAGCTATGAGAGCA  791

seq1  TCTATGCAGCCCTGAGGAGCATCTACTGCAGCGAGGGCCACCGTGGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCAGCCCTGAGGAGCATCTACTGCAGCGAGGGCCACCGTGGCCTC  841

seq1  TTCAGGGGCCTGACAGCAACTCTCCTCCGTGATGCCCCCTTCTCAGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGCCTGACAGCAACTCTCCTCCGTGATGCCCCCTTCTCAGGGCT  891

seq1  CTACCTGATGTTTTACAGTCAGACCAGGACCGCAGTGCTGCACGGCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGATGTTTTACAGTCAGACCAGGACCGCAGTGCTGCACGGCACAG  941

seq1  GTAAGAGTAGTCAGAGGAGTGCCAGAGCCACGGGGTTTTTGCCTTTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTAGTCAGAGGAGTGCCAGAGCCACGGGGTTTTTGCCTTTTTCT  991

seq1  CTGGGGCACTCTTAGCAGCTTTAGGAATGGAGCCACTTTAGGGCTAGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCACTCTTAGCAGCTTTAGGAATGGAGCCACTTTAGGGCTAGGTG  1041

seq1  CTAGAATTC  1059
      |||||||||
seq2  CTAGAATTC  1050

seq1: chr9_119914149_119914301
seq2: B6Ng01-140G18.g_71_223

seq1  ACTCTGTAGATCTGGGTGGCCTCGAATTCACCTACCGCTGCCTTCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGATCTGGGTGGCCTCGAATTCACCTACCGCTGCCTTCACTGA  50

seq1  TATGAATGGTAAAGGTTTGTCTGGCTAATACTCCTGTCAGAGCTCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGGTAAAGGTTTGTCTGGCTAATACTCCTGTCAGAGCTCATTAT  100

seq1  TTCAACAGTCTGATAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGTCTGATAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTG  153
      |||
seq2  GTG  153