BAC Information

Click to search

BAC

Clone NameB6Ng01-140L08
Chromosome9 (Build37)
Map Location 65,220,384 - 65,383,707
singlet/doubletdoublet
Overlap geneGm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7
Downstream genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140L08.bB6Ng01-140L08.g
ACCDH939361DH939362
length1,0871,129
definitionDH939361|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L08, 5' end.DH939362|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,382,604 - 65,383,707)(65,220,384 - 65,221,520)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaagtatggccaggttaggtcatgcagcgccttggcaggagt
gtgagcaagaacttggagtcctgaacccactcaggggaagctgtcctgcc
tgtcaccacctcctgcatggcacagggagagcagggctgctgtgacaatt
tctctgactcttaacaggaagtgtgggttcttcactctgagttgacaacc
acagcagctacacacacatacacacacacacacacacacacacacacaca
cacacacaccctcctttgagcaccactgcaagcatatacataaagcaacc
tagttgttctcctttgtgagcaagcacaccatagatggaaacggctctga
agctcttactggttccagatgcccagctgaggtttatactctgtgccctc
tgacccacatcacatttcatggtagagaatggacttcaggagaggaagtg
aaaccaggacacgaggcaacgcctcttctgggttgtcatagcttagcaaa
agtccccacacaccagccccatggctgatgcccatcagtcctcctgtaac
ctggaggaaaacctaatgcttcaacaggacagactgacaagaataacccc
ccacccacaccctgaggaccacacagggtggcacactcgtgaccactcag
tgccagacactgcctttgatccatctgataagagaggccaaagaaatagg
ggcttgcctgcagaggcttagcatgtaaatgtctgagtttagatctgaac
ctggggtcagaagctggacagcggtagcacacacctttattccagtactc
aggaggcagagacaggagggtctctgtgagtttgagcaagactggtctac
agagcaagtttcagacagcagagctagttacacagagaactctgcctgga
aaacaacaacaacaaagaaatgaaaaaaaaaacctgtggtcagtacatta
tctttggtaagcagcaatggagcagtggcatctctgt
gaattcttttaggtgcggtttgggataacattcatttttgtttcctgggc
acctaacagtaggccctacagacagggggcgctcaatgaatgccagttga
agacttagatctaaagtttcccccacggagaaggcctgtagaagcttggt
ggctcaatcagaaataattcagtaactccttccatgggtgttttgttccc
aattctaagaagggacaaagtgtctacactttggtcttcgttcttcttga
gtttcatgtgttttacaaactgtatcttatatcttgggtattctaagttt
ctgggctaatatccacttatcagtgagtacatatcatgtgagttcttttg
tgattgggttacctcactcaggatgatgccctccaggtccatccatttgt
ctaggagtgtggctggggagatagctcctctcactaagtcactgggtctg
gcagcctcaaggtggattcatatcacaaatgtgcactgtgtgttgggtca
ctgactcctctgagcctggctttcaatcttatgtagcccaggttgacctc
aaacttgctatgtaatggtagatgaggataacctcgaactatttatcctc
ttgcatctgggattacagtatacactgctgggctctgtgtatgagatgtt
aaggaccgaacccaggaccttgtgcattctaggcaagcatgctaccaacc
gagctatgtacttggtctgccttttgtctttcttcctcatctggcctctc
actatgctacccaagctcaacttgaattccaggagccaagcaatcctcct
gcctcagctcccaagtagctatgattatgggcatgtaccaccacatctag
gctaccggtcatatttcatttgcagtgtcgcaagtcctaagtgaaacagt
agctttgctgacagcttctgcacactgggttctttgctaataatcacctt
gctcaggctcagatttatgcctccttaacagtttgatgaggtagttcaag
atggctctgtggcatctgagaaagggacaaagactgagactggagcctgc
agaccaacgctctctgcaggtgagaaagagaacacaagccccatcttaag
aaattcaggccagctgacgtgaaccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65382604_65383707
seq2: B6Ng01-140L08.b_46_1132 (reverse)

seq1  ACAGAG-TGCCACTGCTCCCATCTGCTGCTTTACCATAAAGATTAATGTA  49
      |||||| |||||||||| |||| |||||| |||||  ||||| |||||||
seq2  ACAGAGATGCCACTGCT-CCAT-TGCTGC-TTACC--AAAGA-TAATGTA  44

seq1  CCTGGCCACAGGTTTTTTTTTTTTCATCTCTTTGTTTGTTTGTTTGTTTT  99
       ||| |||||||  ||||||||||||| ||||||||   |||||   |||
seq2  -CTGACCACAGG--TTTTTTTTTTCATTTCTTTGTT--GTTGTT--GTTT  87

seq1  TCCAGGCAGGGTTTCTCTGTGTAACTAGCTCTGGCTGTCCTGAAACTTGC  149
      ||||||||| | |||||||||||||||||||| ||||| |||||||||||
seq2  TCCAGGCAGAG-TTCTCTGTGTAACTAGCTCT-GCTGT-CTGAAACTTGC  134

seq1  TCTGTAGACCAGTCTGGCCTCAAACTCACAGAGACCCTCCTGTCTCTGCC  199
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGTCTTG-CTCAAACTCACAGAGACCCTCCTGTCTCTGCC  183

seq1  TCCTGAGTACTGGGATTAAAGGTGTGTGCTACCGCTGTCCAGCTTCTGAC  249
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTACT-GGAATAAAGGTGTGTGCTACCGCTGTCCAGCTTCTGAC  232

seq1  CCCAGGTTCAGATCTAAACTCAGACATTTACATGCTAAGCCTCTGCAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTCAGATCTAAACTCAGACATTTACATGCTAAGCCTCTGCAGGC  282

seq1  AAGCCCCTATTTCTTTGGCCTCTCTTATCAGATGGATCAAAGGCAGTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTATTTCTTTGGCCTCTCTTATCAGATGGATCAAAGGCAGTGTC  332

seq1  TGGCACTGAGTGGTCACGAGTGTGCCACCCTGTGTGGTCCTCAGGGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGAGTGGTCACGAGTGTGCCACCCTGTGTGGTCCTCAGGGTGTG  382

seq1  GGTGGGGGGTTATTCTTGTCAGTCTGTCCTGTTGAAGCATTAGGTTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGTTATTCTTGTCAGTCTGTCCTGTTGAAGCATTAGGTTTTCC  432

seq1  TCCAGGTTACAGGAGGACTGATGGGCATCAGCCATGGGGCTGGTGTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTACAGGAGGACTGATGGGCATCAGCCATGGGGCTGGTGTGTGG  482

seq1  GGACTTTTGCTAAGCTATGACAACCCAGAAGAGGCGTTGCCTCGTGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGCTAAGCTATGACAACCCAGAAGAGGCGTTGCCTCGTGTCCT  532

seq1  GGTTTCACTTCCTCTCCTGAAGTCCATTCTCTACCATGAAATGTGATGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACTTCCTCTCCTGAAGTCCATTCTCTACCATGAAATGTGATGTG  582

seq1  GGTCAGAGGGCACAGAGTATAAACCTCAGCTGGGCATCTGGAACCAGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGGCACAGAGTATAAACCTCAGCTGGGCATCTGGAACCAGTAA  632

seq1  GAGCTTCAGAGCCGTTTCCATCTATGGTGTGCTTGCTCACAAAGGAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAGAGCCGTTTCCATCTATGGTGTGCTTGCTCACAAAGGAGAAC  682

seq1  AACTAGGTTGCTTTATGTATATGCTTGCAGTGGTGCTCAAAGGAGGGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTTGCTTTATGTATATGCTTGCAGTGGTGCTCAAAGGAGGGTGT  732

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTAGCT  782

seq1  GCTGTGGTTGTCAACTCAGAGTGAAGAACCCACACTTCCTGTTAAGAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTGTCAACTCAGAGTGAAGAACCCACACTTCCTGTTAAGAGTC  832

seq1  AGAGAAATTGTCACAGCAGCCCTGCTCTCCCTGTGCCATGCAGGAGGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTGTCACAGCAGCCCTGCTCTCCCTGTGCCATGCAGGAGGTGG  882

seq1  TGACAGGCAGGACAGCTTCCCCTGAGTGGGTTCAGGACTCCAAGTTCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGCAGGACAGCTTCCCCTGAGTGGGTTCAGGACTCCAAGTTCTTG  932

seq1  CTCACACTCCTGCCAAGGCGCTGCATGACCTAACCTGGCCATACTTCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCTGCCAAGGCGCTGCATGACCTAACCTGGCCATACTTCTTT  982

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTT  1032

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  1082

seq1  AATTC  1104
      |||||
seq2  AATTC  1087

seq1: chr9_65220384_65221520
seq2: B6Ng01-140L08.g_70_1198

seq1  GAATTCTTTTAGGTGCGGTTTGGGATAACATTCATTTTTGTTTCCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGGTGCGGTTTGGGATAACATTCATTTTTGTTTCCTGGGC  50

seq1  ACCTAACAGTAGGCCCTACAGACAGGGGGCGCTCAATGAATGCCAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAGTAGGCCCTACAGACAGGGGGCGCTCAATGAATGCCAGTTGA  100

seq1  AGACTTAGATCTAAAGTTTCCCCCACGGAGAAGGCCTGTAGAAGCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGATCTAAAGTTTCCCCCACGGAGAAGGCCTGTAGAAGCTTGGT  150

seq1  GGCTCAATCAGAAATAATTCAGTAACTCCTTCCATGGGTGTTTTGTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATCAGAAATAATTCAGTAACTCCTTCCATGGGTGTTTTGTTCCC  200

seq1  AATTCTAAGAAGGGACAAAGTGTCTACACTTTGGTCTTCGTTCTTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAGAAGGGACAAAGTGTCTACACTTTGGTCTTCGTTCTTCTTGA  250

seq1  GTTTCATGTGTTTTACAAACTGTATCTTATATCTTGGGTATTCTAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTGTTTTACAAACTGTATCTTATATCTTGGGTATTCTAAGTTT  300

seq1  CTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTG  350

seq1  TGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGT  400

seq1  CTAGGAGTGTGGCTGGGGAGATAGCTCCTCTCACTAAGTCACTGGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTGTGGCTGGGGAGATAGCTCCTCTCACTAAGTCACTGGGTCTG  450

seq1  GCAGCCTCAAGGTGGATTCATATCACAAATGTGCACTGTGTGTTGGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCAAGGTGGATTCATATCACAAATGTGCACTGTGTGTTGGGTCA  500

seq1  CTGACTCCTCTGAGCCTGGCTTTCAATCTTATGTAGCCCAGGTTGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCTCTGAGCCTGGCTTTCAATCTTATGTAGCCCAGGTTGACCTC  550

seq1  AAACTTGCTATGTAATGGTAGATGAGGATAACCTCGAACTATTTATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCTATGTAATGGTAGATGAGGATAACCTCGAACTATTTATCCTC  600

seq1  TTGCATCTGGGATTACAGTATACACTGCCAAGCTCTGTGTATGAGATGTT  650
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TTGCATCTGGGATTACAGTATACACTGCTGGGCTCTGTGTATGAGATGTT  650

seq1  AAGGACCGAACCCAGGACCTTGTGCATTCTAGGCAAGCATGCTACCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCGAACCCAGGACCTTGTGCATTCTAGGCAAGCATGCTACCAACC  700

seq1  GAGCTATGTACTTGGTCTGCCTTTTGTCTTTCTTCCTCATCTGGCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGTACTTGGTCTGCCTTTTGTCTTTCTTCCTCATCTGGCCTCTC  750

seq1  ACTATGCTACCCAAGCTCAACTTGAATTCCAGGAGCCAAGCAATCCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCTACCCAAGCTCAACTTGAATTCCAGGAGCCAAGCAATCCTCCT  800

seq1  GCCTCAGCTCCCAAGTAGCTATGATTATGGGCATGTACCACCACATCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTCCCAAGTAGCTATGATTATGGGCATGTACCACCACATCTAG  850

seq1  GCTACCGGTCATATTTCATTTGCAGTGTCGCAAGCCCTAAGTGAAACAGT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTACCGGTCATATTTCATTTGCAGTGTCGCAAGTCCTAAGTGAAACAGT  900

seq1  AGCTTTTGCTGACAGCTTCTGCACACTGGGCCCTTTGCTAATTAATCACC  950
      ||| ||||||||||||||||||||||||||  ||||||||| ||||||||
seq2  AGC-TTTGCTGACAGCTTCTGCACACTGGGTTCTTTGCTAA-TAATCACC  948

seq1  TTGCTCAGGCTCAGATTTATGCCTCC-TAACAGTCTGATGAGGTAGTTCC  999
      |||||||||||||||||||||||||| ||||||| ||||||||||||| |
seq2  TTGCTCAGGCTCAGATTTATGCCTCCTTAACAGTTTGATGAGGTAGTT-C  997

seq1  AAGATGGCTCTGTTGGCATCTGAGAAAGGGAACAGAGACTGAGACCTGGA  1049
      |||||||||||| ||||||||||||||||| ||| ||||||||| |||||
seq2  AAGATGGCTCTG-TGGCATCTGAGAAAGGG-ACAAAGACTGAGA-CTGGA  1044

seq1  GCCTGCAGGACCCAACGCTCTCTGCAGTGTAGAAAGTAGGACACAAAGCC  1099
      ||||||||   ||||||||||||||||   |||||| || |||| |||||
seq2  GCCTGCAG--ACCAACGCTCTCTGCAGGTGAGAAAG-AGAACAC-AAGCC  1090

seq1  ACATCTTAAGATATTCAGCCCAGCTGACTGTGA--CCTCC  1137
       |||||||||| |||||| ||||||||| ||||  |||||
seq2  CCATCTTAAGAAATTCAGGCCAGCTGAC-GTGAACCCTCC  1129