BAC Information

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BAC

Clone NameB6Ng01-141C08
Chromosome9 (Build37)
Map Location 33,482,586 - 33,644,433
singlet/doubletdoublet
Overlap geneLOC100042343
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C08.bB6Ng01-141C08.g
ACCDH939679DH939680
length785576
definitionDH939679|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C08, 5' end.DH939680|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,482,586 - 33,483,373)(33,643,867 - 33,644,433)
sequence
gaattctgccccaggaccctttaacagagcaggccacagcccacactgag
cctgtagtccccactgcagagtgattaacacacccttttcctcagaccat
ttctgtttgaaaatctatgaagccacttaactaaccaccttcaccacgca
ttcgtgaggaaaggaacagaattcttcagaccccctatccttcatgttct
cctttctcccacacttgaagggtctccaatttcttaaatggcttttagta
atttgtgtggctttcatcccagcctctccagagatgtcttgtcagacaat
agcacttggtaactctgttgtcttcttccctcacagggttacattatttt
ttatttcttccctccacttctttctaaatggtgtcactggagactgacag
aagcctgaaatgatttgctgggattcctcaggcattaatgcctcttcaga
ctacagcagagtgatatctgagttatggctttccaaagtggatttttttt
tatttaatgcttgaaatataatcttaagagaagaaaaacgcaaaacaata
tgtaaattaaaatttgtaaaatgtgttccagtgaagatagaccctggaaa
attatacatagaggcctcaaaagttgttttgggtggtggaataaggtaag
ctaaagggttgtttgttttctcatgctattacttttaacagtatcattct
ttttgagttcaaatatttctaagcttgtcagtccctagggtaaactaaat
tcagccaatgagtataatgtacgggggggggggga
cggaattttaagggctggaacctgaagggttctaatgaagaaaccatgga
gaaagatgtttaatggtttgtttctcttggtttgctcagcctgctttctt
ataaaacccaggaccacaagcacatacttgataccactgaccatggactg
ggccctccctagttgatcattaaataataaaattccttatagctgtatct
tacataggaatttcctcaactgagcctctttctatcagatgactcttgct
tgtatcacattgacaaatacaaccagccaatacaaggactagttcttcca
tattcttgcaatcacttgttttgatctctcttcttagtgatggccaacct
aaattatgtgtaatgctatctaactcagtatttgtttgggggttggggtc
atccccccccttttgagcacttttttctatgctttttttttatcatttat
tcatttttctcagaaagtaactatagaaaactttctatactcaggaatgt
acctatgtgtatttgaaaggtagttctttgggatctcatattactgaatt
tttaaagaattctttacatattcacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33482586_33483373
seq2: B6Ng01-141C08.b_48_832

seq1  GAATTCTGCCCCAGGACCCTTTAACAGAGCAGGCCACAGCCCACACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCCAGGACCCTTTAACAGAGCAGGCCACAGCCCACACTGAG  50

seq1  CCTGTAGTCCCCACTGCAGAGTGATTAACACACCCTTTTCCTCAGACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTCCCCACTGCAGAGTGATTAACACACCCTTTTCCTCAGACCAT  100

seq1  TTCTGTTTGAAAATCTATGAAGCCACTTAACTAACCACCTTCACCACGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGAAAATCTATGAAGCCACTTAACTAACCACCTTCACCACGCA  150

seq1  TTCGTGAGGAAAGGAACAGAATTCTTCAGACCCCCTATCCTTCATGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGAGGAAAGGAACAGAATTCTTCAGACCCCCTATCCTTCATGTTCT  200

seq1  CCTTTCTCCCACACTTGAAGGGTCTCCAATTTCTTAAATGGCTTTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCCACACTTGAAGGGTCTCCAATTTCTTAAATGGCTTTTAGTA  250

seq1  ATTTGTGTGGCTTTCATCCCAGCCTCTCCAGAGATGTCTTGTCAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGGCTTTCATCCCAGCCTCTCCAGAGATGTCTTGTCAGACAAT  300

seq1  AGCACTTGGTAACTCTGTTGTCTTCTTCCCTCACAGGGTTACATTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGTAACTCTGTTGTCTTCTTCCCTCACAGGGTTACATTATTTT  350

seq1  TTATTTCTTCCCTCCACTTCTTTCTAAATGGTGTCACTGGAGACTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTCCCTCCACTTCTTTCTAAATGGTGTCACTGGAGACTGACAG  400

seq1  AAGCCTGAAATGATTTGCTGGGATTCCTCAGGCATTAATGCCTCTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAAATGATTTGCTGGGATTCCTCAGGCATTAATGCCTCTTCAGA  450

seq1  CTACAGCAGAGTGATATCTGAGTTATGGCTTTCCAAAGTGGATTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGAGTGATATCTGAGTTATGGCTTTCCAAAGTGGATTTTTTTT  500

seq1  TATTTAATGCTTGAAATATAATCTTAAGAGAAGAAAAACGCAAAACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGCTTGAAATATAATCTTAAGAGAAGAAAAACGCAAAACAATA  550

seq1  TGTAAATTAAAATTTGTAAAATGTGTTCCAGTGAAGATAGACCCTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTAAAATTTGTAAAATGTGTTCCAGTGAAGATAGACCCTGGAAA  600

seq1  ATTATACATAGAGGCCTCAAAAGTTGTTTTGGGTGGTGGAATTAGGTAAG  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTATACATAGAGGCCTCAAAAGTTGTTTTGGGTGGTGGAATAAGGTAAG  650

seq1  CTTAATGGTTGTTTGTTTTCTCATGCTATTACTTTTAACAGTATCATTCT  700
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGTTGTTTGTTTTCTCATGCTATTACTTTTAACAGTATCATTCT  700

seq1  TTTTGAGTTCAAATATTTCTAAGCTTGTCAGTCCCTAGGGTAAACTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTCAAATATTTCTAAGCTTGTCAGTCCCTAGGGTAAACTAAAT  750

seq1  TCAGCCAATGAGTATAAATGGTACGGGGGGGGGGGGGA  788
      |||||||||||||||||   |||| |||||||||||||
seq2  TCAGCCAATGAGTATAA--TGTAC-GGGGGGGGGGGGA  785

seq1: chr9_33643867_33644433
seq2: B6Ng01-141C08.g_74_644 (reverse)

seq1  CGTGAATATGTAAAGAATTCTTT-AAAATTCAGTAATATGAGATCCCAAA  49
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTGAATATGTAAAGAATTCTTTAAAAATTCAGTAATATGAGATCCCAAA  50

seq1  GAACTACCTTTCAAATACACATAGGTACATTCCTGAGTATAGAAAGTTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCTTTCAAATACACATAGGTACATTCCTGAGTATAGAAAGTTTT  100

seq1  CTATAGTTACTTTCTGAGAAAAATGAATAAATGATAAAAAAAAAGCATAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTACTTTCTGAGAAAAATGAATAAATGATAAAAAAAAAGCATAG  150

seq1  AAAAAAGTGCTCAAAA-TTTTGTCATGA--GAAAATGCAGATCAAATACT  196
      ||||||||||||||||     |  ||||    ||   |  | ||||||||
seq2  AAAAAAGTGCTCAAAAGGGGGGGGATGACCCCAACCCCCAAACAAATACT  200

seq1  GAGTTAGATAGCATTTCACCTAATTTAGGTTGGCCATCACTAAGAAGAGA  246
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  GAGTTAGATAGCATTACACATAATTTAGGTTGGCCATCACTAAGAAGAGA  250

seq1  GATCAAAACAAGTGATTGCAAGAATATGGAAGAACTAGTCCTTGTATTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACAAGTGATTGCAAGAATATGGAAGAACTAGTCCTTGTATTGG  300

seq1  CTGGTTGTATTTGTCAATGTGATACAAGCAAGAGTCATCTGATAGAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTATTTGTCAATGTGATACAAGCAAGAGTCATCTGATAGAAAGA  350

seq1  GGCTCAGTTGAGGAAATTCCTATGTAAGATACAGCTATAAGGAATTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTTGAGGAAATTCCTATGTAAGATACAGCTATAAGGAATTTTAT  400

seq1  TATTTAATGATCAACTAGGGAGGGCCCAGTCCATGGTCAGTGGTATCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TATTTAATGATCAACTAGGGAGGGCCCAGTCCATGGTCAGTGGTATCAAG  450

seq1  TATGTGCTTGTGGTCCTGGGTTTTATAAGAAAGCAGGCTGAGCAAACCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGTGGTCCTGGGTTTTATAAGAAAGCAGGCTGAGCAAACCAA  500

seq1  GAGAAACAAACCATTAAACATCACTGCTCCATGGTTTCTTCATTAGAACC  546
      ||||||||||||||||||||||  | ||||||||||||||||||||||||
seq2  GAGAAACAAACCATTAAACATC-TTTCTCCATGGTTTCTTCATTAGAACC  549

seq1  CTTCAGGTTCCAGCCCTAAAA-  567
      ||||||||||||||||| ||| 
seq2  CTTCAGGTTCCAGCCCTTAAAA  571