BAC Information

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BAC

Clone NameB6Ng01-141D20
Chromosome9 (Build37)5 (Build37)
Map Location 96,718,222 - 96,718,63418,084,511 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneAcpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D20.bB6Ng01-141D20.g
ACCDH939746DH939747
length995946
definitionDH939746|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D20, 5' end.DH939747|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,718,222 - 96,718,634)(18,084,511 - 18,084,577)
sequence
gaattcctgatttttccaagacttttatcataaaggggtattggatattg
tcaaatgatttctcagcatctaatgagatgatcctgtggtttttgccttt
gagtttgtttatattgatggatttctgtatattaaaccatccccgcatcc
ctggaatgaagcctacttggtcatgatggatgatagttttgacgtgttct
tgaatttggttagagagaactttattgaatatttttgcattgatattcat
cagagaaattgttctctttttgggtcttgatgtggtttaggtatcagagt
aattgtggcttcgtagaatgaattgggtagagtaccttctgcttatatat
tttgtggaatagtttgagaagacctggaattagttcttcttttaaagtct
gatagaattatgtactaagctatttggtcatggcctttttttggttggga
gactattaatgactgcttctatttctttaggcaatgtagggctgtttagg
tcattaatttgatactgatttaactttggtacctgatatctgtctagaaa
tttgtccatttcatccaggttttccagttattttttccattttttattag
gtatttagctcatttacatttccaatgctataccaaaagtcccccatatc
cacccacctccactttccccgcccacccactccccctttttggccctggt
gttccccctgtacaggggcatataaagtttgcaagttccaatgggcctct
ctttccagtgatggccgactaggtcatcttttgatatatatgcagctaga
gtcaagagcttccggggtactggttagttcataatgttgtttcatctata
gggttgcagattccttttagctccttggctactttctctagctctccatt
gggagccctatgattcatccattagctgactgtgagcatccactctgtgt
tttctagctccggcatagtctcacaggagacagctacatctgggt
gaattcttacctgaagaatactgaatggctgagaagcacctgaaaaaatg
tccaatatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacctcacatcagtcagaatggctaagatcaaaaattcaggtgacagc
aaatgctggtgaggatgtagagaaagaggaacactcctccatttttggtg
ggattgcaagcttgtacaatcactctggaaatcattctggcggttcctca
gaaaattggacatagtactactggaggatcttgcaatacctctccttggc
atatatatatatatatccagaagatgttccacctggtaagaaggacacat
gctccactatgttcatggcagccttatttataatagccagaagctggaaa
gaaccagatgcccctcaacagaggaatggatacagaaaatgtggtacatt
tacacaatggagtactactcagttattaaaaagaatgaatttatgaaatt
cctagccaaatggatggacctggagggcatcatcctgagcaaggtaacca
aatcataaaggaaatcatacaatatgtactcactgataagtggatacttt
cccaaaacgtagtatacccaagatataagatacaatttgccaaatgcatg
aaactctagaagaatgaagaccaaagtgtggacactgtgctccttcttag
aattgggaacaaaacacccatggaaggagttacagagacaaagtttggag
ctgtgacaaaaggatggaccatctagaaactacacttatctagggatcca
ccccataatcagcttccaaacgctgacaccactgcatacactggcaagat
tttgctgaaaggacccagatatagctgtctcttgtgagactaggcagggg
cctagcaaacacagaagtggatgctcacagtcagctatggatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96718222_96718634
seq2: B6Ng01-141D20.b_624_1038 (reverse)

seq1  ACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACAC  50
      ||||||||||||||||||| |||||||||||||||| | |||| ||||||
seq2  ACCCAGATGTAGCTGTCTCCTGTGAGACTATGCCGGAG-CTAGAAAACAC  49

seq1  AGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAAT  100
      || ||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  AG-AGTGGATGCTCACAGTCAGCTAATGGATGAATCATAGGGCTCCCAAT  98

seq1  GGAGGAGCTAGAGAAAGTACCCAAGGAGCT-AAAGGGATCTTCAACCCTA  149
      ||| ||||||||||||||| |||||||||| ||||| |||| ||||||||
seq2  GGA-GAGCTAGAGAAAGTAGCCAAGGAGCTAAAAGGAATCTGCAACCCTA  147

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTG-AGCTCTTGACTC  198
      ||| || |||||||||||||||||||||||||||| | ||||||||||||
seq2  TAGATGAAACAACATTATGAACTAACCAGTACCCCGGAAGCTCTTGACTC  197

seq1  TAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  248
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TAGCTGCATATATATCAAAAGATGACCTAGTCGGCCATCACTGGAAAGAG  247

seq1  AGGCCCATTGG-ACACGCAGACTTTGTGTGCCCCGGTACA-GGGGAACGC  296
      ||||||||||| ||  ||| ||||| | |||||| ||||| ||||||| |
seq2  AGGCCCATTGGAACTTGCAAACTTTATATGCCCCTGTACAGGGGGAACAC  297

seq1  CAGGGCCAAAGGGGGGAAGTGGGTGGGTAGGG-GAGTGGGGGTGGGTGGG  345
      ||||||||||  |||| ||||||||||  |||  ||||| ||||||||| 
seq2  CAGGGCCAAAAAGGGGGAGTGGGTGGGCGGGGAAAGTGGAGGTGGGTGGA  347

seq1  TAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCT  395
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCT  397

seq1  AATAAAAAATGGAAAAAA  413
      ||||||||||||||||||
seq2  AATAAAAAATGGAAAAAA  415

seq1: chr5_18084511_18084577
seq2: B6Ng01-141D20.g_393_459 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCCATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||||||||||| |||||
seq2  CTTCTTACCAGGTGGAA  67