BAC Information

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BAC

Clone NameB6Ng01-141H13
Chromosome9 (Build37)
Map Location 68,058,708 - 68,178,678
singlet/doubletdoublet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H13.bB6Ng01-141H13.g
ACCDH939922DH939923
length1,123981
definitionDH939922|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H13, 5' end.DH939923|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,058,708 - 68,059,835)(68,177,694 - 68,178,678)
sequence
gaattctttctagttagagaaagcaagaggtacgggaattcagggcaatg
agaaccaaacttgctaactactgtactgcagcttcccataaatctcagga
tgctaggaacactggcttcagcagctgcacccaaagacggcagtgggaaa
ccttcattgagtcaaatggcatgacgggtagagagctttgtaacacagca
gcttttacatgggtttgtggtctgggatggcagtatttgcataatgcaag
caaccacaagctaagaattttaatttaaagcaggccagacaggggtgagc
acacatctctagaggaatcaacattctatcagcactacaaagaatccaca
taggattagtcccagtgaaaacaaactcatggtcagaaatcacaaagtat
acaatgaggccacgtatgaggaatgagtccccagagaagactggaaatgg
caagcaatgaccctatcctgtgtattttacatgtttaatacatttcaaga
ggtaagaaatgaaattatgactgaaagcataagagtgtcaacatgggcct
gaagaagttcgagatatctggaaatatatctataaaagaagttatataag
caatgtattgaagtacaaggggattgttaactgtccaggaccatacacaa
catagagagggacgggagaaagacatgaagagaacaggtcaggcctgcag
aagaggtcctaaagccaagctctgatcacagttagaattgaaacatccct
ttccgtggatttcgaccatttcaaattgttctttatgaattgagagtttt
gttacatttcagagagtttccagaaatgcccccttgaccgttgaccttgt
tgtatatgtctgggttcaatcacatctaacaatttttattggttctcttg
cagtatattgttgagaagggcaacctccgtaccaagagaaagacagaaat
ttattcttagggtgtcaagctaagtctatagattaatttaaacagaattt
aatccattacttaattggaaagtattgcacatcagtcctataaacttgga
tgtgttgacaatggtgatgatttggtctggaaattacttgggcttaaatt
actttcgatgttggtgggagggc
gaattccaaccacataaataaatagaaggcaattacaagtttgaagtaag
aatctgggtaggattaccgagaaatgtttgatggtgtacattattgcttc
ctcaaaacatagacttacttttagccattagaagtatatgtataacaaca
tatgtatatatatacacatatacacatatacacatagacatattttcgtc
tatataaaagagttccagaagctttcccaagaaagcggtgatagtgggag
gggatctacaagcaagagagagagatactttcctgtatgccctactgtat
tatttgatttttttctactacacttgttattactttttcaataaaacaat
gttaatgggacaataagagatggatttgttgggttttttttcaagtagca
gatgtcaagaaatgcttaatgggaccgcagcatcttttagggtagcatga
aatagaacaagatgaggggaaaggacaaaaatggaagccgccagcagcac
ttaccagcaggcagtacttttttttagcaggttgcaatatatttttatga
cagacaagcataatttaaatatcattagctgggataatcaagatctaggt
tcaagacccccagaggcactcttgtctttggctgctgctttgagggggat
gggatcataggagctatgtgggttcagaagtcctacctgcctatagcctg
ggatttaggcatcccctagctctgtgtgctatgtagtggccattgggttt
tgttaaagaacaattcaaggggtgtgtgtgcagcctagctgactgagtgc
ctagcatgcactgaacccggggataaagccccagtgcatttaaaacagtg
ggtttggtggtgcacactggctcctttggtacttaaaggtagaggtggga
gcgtcggagttaagggtcttctcgaactagtagtggtttcaggcctgtct
gggatgttaaaaaatcctgtttagggaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68058708_68059835
seq2: B6Ng01-141H13.b_47_1169

seq1  GAATTCTTTCTAGTTAGAGAAAGCAAGAGGTACGGGAATTCAGGGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGTTAGAGAAAGCAAGAGGTACGGGAATTCAGGGCAATG  50

seq1  AGAACCAAACTTGCTAACTACTGTACTGCAGCTTCCCATAAATCTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAACTTGCTAACTACTGTACTGCAGCTTCCCATAAATCTCAGGA  100

seq1  TGCTAGGAACACTGGCTTCAGCAGCTGCACCCAAAGACGGCAGTGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAACACTGGCTTCAGCAGCTGCACCCAAAGACGGCAGTGGGAAA  150

seq1  CCTTCATTGAGTCAAATGGCATGACGGGTAGAGAGCTTTGTAACACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTGAGTCAAATGGCATGACGGGTAGAGAGCTTTGTAACACAGCA  200

seq1  GCTTTTACATGGGTTTGTGGTCTGGGATGGCAGTATTTGCATAATGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACATGGGTTTGTGGTCTGGGATGGCAGTATTTGCATAATGCAAG  250

seq1  CAACCACAAGCTAAGAATTTTAATTTAAAGCAGGCCAGACAGGGGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAAGCTAAGAATTTTAATTTAAAGCAGGCCAGACAGGGGTGAGC  300

seq1  ACACATCTCTAGAGGAATCAACATTCTATCAGCACTACAAAGAATCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTCTAGAGGAATCAACATTCTATCAGCACTACAAAGAATCCACA  350

seq1  TAGGATTAGTCCCAGTGAAAACAAACTCATGGTCAGAAATCACAAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAGTCCCAGTGAAAACAAACTCATGGTCAGAAATCACAAAGTAT  400

seq1  ACAATGAGGCCACGTATGAGGAATGAGTCCCCAGAGAAGACTGGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGGCCACGTATGAGGAATGAGTCCCCAGAGAAGACTGGAAATGG  450

seq1  CAAGCAATGACCCTATCCTGTGTATTTTACATGTTTAATACATTTCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATGACCCTATCCTGTGTATTTTACATGTTTAATACATTTCAAGA  500

seq1  GGTAAGAAATGAAATTATGACTGAAAGCATAAGAGTGTCAACATGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAATGAAATTATGACTGAAAGCATAAGAGTGTCAACATGGGCCT  550

seq1  GAAGAAGTTCGAGATATCTGGAAATATATCTATAAAAGAAGTTATATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTCGAGATATCTGGAAATATATCTATAAAAGAAGTTATATAAG  600

seq1  CAATGTATTGAAGTACAAGGGGATTGTTAACTGTCCAGGACCATACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTGAAGTACAAGGGGATTGTTAACTGTCCAGGACCATACACAA  650

seq1  CATAGAGAGGGACGGGAGAAAGACATGAAGAGAACAGGTCAGGCCTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAGGGACGGGAGAAAGACATGAAGAGAACAGGTCAGGCCTGCAG  700

seq1  AAGAGGTCCTAAAGCCAAGCTCTGATCACAGTTAGAATTGAAACATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCCTAAAGCCAAGCTCTGATCACAGTTAGAATTGAAACATCCCT  750

seq1  TTCCGTGGATTTCGACCATTTCAAATTGTTCTTTATGAATTGAGAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGGATTTCGACCATTTCAAATTGTTCTTTATGAATTGAGAGTTTT  800

seq1  GTTACATTTCAGAGAGTTTCCAGAAATGCCCCCTTGACCGTTGACCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTTCAGAGAGTTTCCAGAAATGCCCCCTTGACCGTTGACCTTGT  850

seq1  TGTATATGTCT-GGTTCAATCACATCTAACAATTTTTACTGG-TCCCCTG  898
      ||||||||||| |||||||||||||||||||||||||| ||| || | ||
seq2  TGTATATGTCTGGGTTCAATCACATCTAACAATTTTTATTGGTTCTCTTG  900

seq1  CAGATAATTGTTGAGAAGGGCAA-CTCCGTACCAAGAGAAAGACAG-AAT  946
      |||   ||||||||||||||||| |||||||||||||||||||||| |||
seq2  CAGTATATTGTTGAGAAGGGCAACCTCCGTACCAAGAGAAAGACAGAAAT  950

seq1  TTATTCTTAGGATG-CAAGCTAAGCCTAGAGATTAATTAAAAACAGATTT  995
      ||||||||||| || ||||||||| ||| |||||||||  ||||||| ||
seq2  TTATTCTTAGGGTGTCAAGCTAAGTCTATAGATTAATT-TAAACAGAATT  999

seq1  TATTCATTTACATAATTGAGAAATTATTTCCAACATCAGTCCTAATAAAC  1045
      || ||  |||| |||||| |||| |||| |  ||||||||||| ||||||
seq2  TAATCCATTACTTAATTG-GAAAGTATTGC--ACATCAGTCCT-ATAAAC  1045

seq1  TTGGATGTGTTTGACAAATGTGATGATTTGTTCTGGGATAAATACTTGGC  1095
      ||||||||| |||||||  ||||||||||| |||||   || ||||||| 
seq2  TTGGATGTG-TTGACAATGGTGATGATTTGGTCTGG--AAATTACTTGGG  1092

seq1  CTTTAAAATATACTTTTGATGTTGGT-GGAGGGC  1128
      |||  |||| |||||| ||||||||| |||||||
seq2  CTT--AAAT-TACTTTCGATGTTGGTGGGAGGGC  1123

seq1: chr9_68177694_68178678
seq2: B6Ng01-141H13.g_67_1047 (reverse)

seq1  TTTTCCCCTAAAACAGGATTTTTTACACATCCCAGACTGGCCTTGAACTC  50
      |||| |||| ||||||||||||||| ||||||||||| |||| ||||  |
seq2  TTTTTCCCT-AAACAGGATTTTTTA-ACATCCCAGACAGGCC-TGAAACC  47

seq1  ACTACATAGTTCGAGATGACCTTGAACTTCTGACGCTCCCAACTCTACCT  100
      ||||| |||||||||| |||| | ||| || |||||||||| ||||||||
seq2  ACTAC-TAGTTCGAGAAGACCCTTAAC-TCCGACGCTCCCACCTCTACCT  95

seq1  ATAAGTACCAAGAGAGCCAGTGTGCACCACCAAA-CCACTGTTTTATATA  149
       ||||||||||  ||||||||||||||||||||| ||||||||||| || 
seq2  TTAAGTACCAAAGGAGCCAGTGTGCACCACCAAACCCACTGTTTTAAAT-  144

seq1  GCACTGGGGCTTTATCCCGGGTTTCAGTGCATGCTAGGCACTCAGTCAGC  199
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GCACTGGGGCTTTATCCCCGGGTTCAGTGCATGCTAGGCACTCAGTCAGC  194

seq1  TAGGCTGCACACACACCCC-TGAATTGTTCTTTAACAAAACCCAATGGCC  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGGCTGCACACACACCCCTTGAATTGTTCTTTAACAAAACCCAATGGCC  244

seq1  ACTACATAGCACACAGAGCTAGGGGATGCCTAAATCCCAGGCTATAGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAGCACACAGAGCTAGGGGATGCCTAAATCCCAGGCTATAGGCA  294

seq1  GGTAGGACTTCTGAACCCACATAGCTCCTATGATCCCATCCCCCTCAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGACTTCTGAACCCACATAGCTCCTATGATCCCATCCCCCTCAAAG  344

seq1  CAGCAGCCAAAGACAAGAGTGCCTCTGGGGGTCTTGAACCTAGATCTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCAAAGACAAGAGTGCCTCTGGGGGTCTTGAACCTAGATCTTGA  394

seq1  TTATCCCAGCTAATGATATTTAAATTATGCTTGTCTGTCATAAAAATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCAGCTAATGATATTTAAATTATGCTTGTCTGTCATAAAAATATA  444

seq1  TTGCAACCTGCTAAAAAAAAGTACTGCCTGCTGGTAAGTGCTGCTGGCGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCTGCTAAAAAAAAGTACTGCCTGCTGGTAAGTGCTGCTGGCGG  494

seq1  CTTCCATTTTTGTCCTTTCCCCTCATCTTGTTCTATTTCATGCTACCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTTTTGTCCTTTCCCCTCATCTTGTTCTATTTCATGCTACCCTA  544

seq1  AAAGATGCTGCGGTCCCATTAAGCATTTCTTGACATCTGCTACTTGAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTGCGGTCCCATTAAGCATTTCTTGACATCTGCTACTTGAAAA  594

seq1  AAAACCCAACAAATCCATCTCTTATTGTCCCATTAACATTGTTTTATTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAACAAATCCATCTCTTATTGTCCCATTAACATTGTTTTATTGA  644

seq1  AAAAGTAATAACAAGTGTAGTAGAAAAAAATCAAATAATACAGTAGGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATAACAAGTGTAGTAGAAAAAAATCAAATAATACAGTAGGGCA  694

seq1  TACAGGAAAGTATCTCTCTCTCTTGCTTGTAGATCCCCTCCCACTATCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAAGTATCTCTCTCTCTTGCTTGTAGATCCCCTCCCACTATCAC  744

seq1  CGCTTTCTTGGGAAAGCTTCTGGAACTCTTTTATATAGACGAAAATATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTTGGGAAAGCTTCTGGAACTCTTTTATATAGACGAAAATATGT  794

seq1  CTATGTGTATATGTGTATATGTGTATATATATACATATGTTGTTATACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTATATGTGTATATGTGTATATATATACATATGTTGTTATACAT  844

seq1  ATACTTCTAATGGCTAAAAGTAAGTCTATGTTTTGAGGAAGCAATAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTAATGGCTAAAAGTAAGTCTATGTTTTGAGGAAGCAATAATGT  894

seq1  ACACCATCAAACATTTCTCGGTAATCCTACCCAGATTCTTACTTCAAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAAACATTTCTCGGTAATCCTACCCAGATTCTTACTTCAAACT  944

seq1  TGTAATTGCCTTCTATTTATTTATGTGGTTGGAATTC  985
      |||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGCCTTCTATTTATTTATGTGGTTGGAATTC  981