BAC Information

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BAC

Clone NameB6Ng01-141I17
Chromosome9 (Build37)
Map Location 52,257,419 - 52,407,675
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I17.bB6Ng01-141I17.g
ACCDH939976DH939977
length1,025870
definitionDH939976|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I17, 5' end.DH939977|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,406,629 - 52,407,675)(52,257,419 - 52,257,966)
sequence
gaattccagccccttcctatcacagcacaagataaaatatgaccctaccc
agtctggcttcctggcacacaggttatgctagagtaaatcacgtggtgat
gaacttcctaccctcaccccaaaacctcaaaaaggttagaaaattgcccc
cttctctgaaggctctttctcctccgtagtatccttcctcctaaggggct
cactctgaaaggtaagcttgtgtcagcttccttctccttttgctgcaata
actgctaatgttaggttcacctcctagtggtggcagcgaggatactgagg
acagtaagagacaggagtaggaagttttactaggtgtagtaatttagaat
ttactaactgtagttttttaggtatattctatttcattttgagactatct
atagattactgaaacctgaggtaagttagccttgtccctccatatgatga
caaagctttgcaagccatctttgtcaagtagggtaccaacagaactttgc
atagaaatcaagttcaatattagcgaatatgccccttctgtatgaggctt
ggccttgagtaaccttctaataaattcattgattattgagctatcaatga
atcaatattgctttcctgaaattagctggggttttttatttttttggaca
ttctttgcaatgtaggcatcgttgagctgatatggctctgtttcatttaa
tcattaattacttggaaaatatgcactgtattttggaaagtttagacatt
tggatatgatagtttctgctgttagaataaactccttaataggatttaaa
cataatcccagagaaaagaagattgtggacagtaacatttgcttcctgtt
cctttggactaatctttctttgtctaggtgttagaaagtattggaggggt
tcagagaaaacatgttgtggaaaagagttcaaattcagactctaaatcct
ttgctcacgactgctcccaccacaattggatcctacataaaatgcttaaa
atcactacaaccttgagaatttttt
gaattctcattcgggccaatacaacacaagcatttaaaaatttaatgaat
tttctttagtttttgagagtgtaatacagttgcatcatttagctcttccc
ttgtctccctccaaatcaccccaaatacccctccttactcttttcaaatt
catgacctcctttttctttgtttttacatgcatatgcatatgtatataat
gcatattcctaaatataaccctctcagtttgtgtaatgttagttgtatgt
atgtgttcagggttgaccatttggtattgggtaaccagttggtattctct
tccctgggagaattgtttctttcactctcagaattccttgggtgcctatg
gtgctttgtgtaggattgaggccttttgggcatttcttgacatgtctatt
gttgttcttgttcagcttatggttatgttgatgaggcatcataggtgtag
cttccaacattccttggagacacaatctcacagctgatcctctggctctt
aaaatcttgctgcctccttttcctggtccttaggtgcagaaattgtatta
cagactagtctctaaaactctgtattttttattgattgtggttttctata
attgtctctgttgcaaagaacttgttgagagttgagggctacatttatct
gtgaatataaaggcaagttggttttggtaaagtggtaggtataggctctc
ccccaagatcaatgacttcactagcctggggcagttggctaggtttctgg
taccaggaatgatactcccttgtgttgagtgggtcttacgtccaattatc
tgttggtactctcagggtatgagtgccactactgtacttttaggatcata
gtgccatgttggttgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52406629_52407675
seq2: B6Ng01-141I17.b_49_1073 (reverse)

seq1  AAAAAAATCTCAAAGGTTGTTAGTGTATTTTTAAGCATTTTTAATGTAGG  50
      |||||| |||| ||||||| |||||   |||||||||||||  |||||||
seq2  AAAAAATTCTC-AAGGTTG-TAGTG--ATTTTAAGCATTTT--ATGTAGG  44

seq1  AACCAAATTGTGTGTTGGGAGCAAGTCTGTGAGCAAAAGGATTTTAGAGT  100
      | ||||    |||| ||||||| |||| |||||| |||||| ||||||||
seq2  ATCCAA---TTGTGGTGGGAGC-AGTC-GTGAGC-AAAGGA-TTTAGAGT  87

seq1  CTGAATTTTGAACTCTTTCTCCACAACATTGTTTTCCTCTGAACCCCTCC  150
      ||||| |||||||||||| ||||||||| |||||| ||||||||||||||
seq2  CTGAA-TTTGAACTCTTT-TCCACAACA-TGTTTT-CTCTGAACCCCTCC  133

seq1  AATACTTTCTTAACAACCTAGACAAAAGAAAGATTAGTCCAAAGGAAACA  200
      ||||||||| |||| |||||||| ||||||||||||||||||||| ||||
seq2  AATACTTTC-TAAC-ACCTAGAC-AAAGAAAGATTAGTCCAAAGG-AACA  179

seq1  GGGAAGCAAATGTTACTGTCCACAATCTTCTTTTCTCTGGGATTATGTTT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGAAGCAAATGTTACTGTCCACAATCTTCTTTTCTCTGGGATTATGTTT  228

seq1  AAATCCTATTAAGGAGTTTATTCTAACAGCAGAAACTATCATATCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTATTAAGGAGTTTATTCTAACAGCAGAAACTATCATATCCAAAT  278

seq1  GTCTAAACTTTCCAAAATACAGTGCATATTTTCCAAGTAATTAATGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACTTTCCAAAATACAGTGCATATTTTCCAAGTAATTAATGATTA  328

seq1  AATGAAACAGAGCCATATCAGCTCAACGATGCCTACATTGCAAAGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAGAGCCATATCAGCTCAACGATGCCTACATTGCAAAGAATGT  378

seq1  CCAAAAAAATAAAAAACCCCAGCTAATTTCAGGAAAGCAATATTGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAATAAAAAACCCCAGCTAATTTCAGGAAAGCAATATTGATTCA  428

seq1  TTGATAGCTCAATAATCAATGAATTTATTAGAAGGTTACTCAAGGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCTCAATAATCAATGAATTTATTAGAAGGTTACTCAAGGCCAAG  478

seq1  CCTCATACAGAAGGGGCATATTCGCTAATATTGAACTTGATTTCTATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACAGAAGGGGCATATTCGCTAATATTGAACTTGATTTCTATGCA  528

seq1  AAGTTCTGTTGGTACCCTACTTGACAAAGATGGCTTGCAAAGCTTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGTTGGTACCCTACTTGACAAAGATGGCTTGCAAAGCTTTGTCA  578

seq1  TCATATGGAGGGACAAGGCTAACTTACCTCAGGTTTCAGTAATCTATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGAGGGACAAGGCTAACTTACCTCAGGTTTCAGTAATCTATAGA  628

seq1  TAGTCTCAAAATGAAATAGAATATACCTAAAAAACTACAGTTAGTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAAAATGAAATAGAATATACCTAAAAAACTACAGTTAGTAAATT  678

seq1  CTAAATTACTACACCTAGTAAAACTTCCTACTCCTGTCTCTTACTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTACTACACCTAGTAAAACTTCCTACTCCTGTCTCTTACTGTCCT  728

seq1  CAGTATCCTCGCTGCCACCACTAGGAGGTGAACCTAACATTAGCAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCTCGCTGCCACCACTAGGAGGTGAACCTAACATTAGCAGTTAT  778

seq1  TGCAGCAAAAGGAGAAGGAAGCTGACACAAGCTTACCTTTCAGAGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAAAGGAGAAGGAAGCTGACACAAGCTTACCTTTCAGAGTGAGC  828

seq1  CCCTTAGGAGGAAGGATACTACGGAGGAGAAAGAGCCTTCAGAGAAGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGGAGGAAGGATACTACGGAGGAGAAAGAGCCTTCAGAGAAGGGG  878

seq1  GCAATTTTCTAACCTTTTTGAGGTTTTGGGGTGAGGGTAGGAAGTTCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTCTAACCTTTTTGAGGTTTTGGGGTGAGGGTAGGAAGTTCATC  928

seq1  ACCACGTGATTTACTCTAGCATAACCTGTGTGCCAGGAAGCCAGACTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGATTTACTCTAGCATAACCTGTGTGCCAGGAAGCCAGACTGGG  978

seq1  TAGGGTCATATTTTATCTTGTGCTGTGATAGGAAGGGGCTGGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCATATTTTATCTTGTGCTGTGATAGGAAGGGGCTGGAATTC  1025

seq1: chr9_52257419_52257966
seq2: B6Ng01-141I17.g_68_615

seq1  GAATTCTCATTCGGGCCAATACAACACAAGCATTTAAAAATTTAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCGGGCCAATACAACACAAGCATTTAAAAATTTAATGAAT  50

seq1  TTTCTTTAGTTTTTGAGAGTGTAATACAGTTGCATCATTTAGCTCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTTTTTGAGAGTGTAATACAGTTGCATCATTTAGCTCTTCCC  100

seq1  TTGTCTCCCTCCAAATCACCCCAAATACCCCTCCTTACTCTTTTCAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCCTCCAAATCACCCCAAATACCCCTCCTTACTCTTTTCAAATT  150

seq1  CATGACCTCCTTTTTCTTTGTTTTTACATGCATATGCATATGTATATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTCCTTTTTCTTTGTTTTTACATGCATATGCATATGTATATAAT  200

seq1  GCATATTCCTAAATATAACCCTCTCAGTTTGTGTAATGTTAGTTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTCCTAAATATAACCCTCTCAGTTTGTGTAATGTTAGTTGTATGT  250

seq1  ATGTGTTCAGGGTTGACCATTTGGTATTGGGTAACCAGTTGGTATTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCAGGGTTGACCATTTGGTATTGGGTAACCAGTTGGTATTCTCT  300

seq1  TCCCTGGGAGAATTGTTTCTTTCACTCTCAGAATTCCTTGGGTGCCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGAGAATTGTTTCTTTCACTCTCAGAATTCCTTGGGTGCCTATG  350

seq1  GTGCTTTGTGTAGGATTGAGGCCTTTTGGGCATTTCTTGACATGTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTGTAGGATTGAGGCCTTTTGGGCATTTCTTGACATGTCTATT  400

seq1  GTTGTTCTTGTTCAGCTTATGGTTATGTTGATGAGGCATCATAGGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTGTTCAGCTTATGGTTATGTTGATGAGGCATCATAGGTGTAG  450

seq1  CTTCCAACATTCCTTGGAGACACAATCTCACAGCTGATCCTCTGGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACATTCCTTGGAGACACAATCTCACAGCTGATCCTCTGGCTCTT  500

seq1  AAAATCTTGCTGCCTCCTTTTCCTGGTCCTTAGGTGCAGAAATTGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGCTGCCTCCTTTTCCTGGTCCTTAGGTGCAGAAATTGTAT  548