BAC Information

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BAC

Clone NameB6Ng01-141K08
Chromosome9 (Build37)
Map Location 117,584,465 - 117,613,371
singlet/doubletdoublet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K08.bB6Ng01-141K08.g
ACCDH940050DH940051
length1,083178
definitionDH940050|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K08, 5' end.DH940051|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,584,465 - 117,585,552)(117,613,084 - 117,613,371)
sequence
gaattctaaacttactttgctaagcttgccctgagatttctaactctatg
tagtagatagtaaagcctggtttcttttactatctctcttacaatactag
agacaattctgaatgccactaaataggaaacattcttactgaattccaag
cccagggtcggctcaaggactatctagagcattggtgaaggccagagagc
aaagttcaattttgcttaggtatttggcaagtcatttcttggaggcacct
ataataaaacaatactgaaagaaagcagatccattcgccaggacaagttt
ggagcaatcattatatgggatgccacggttccaggagactaagtttctgt
gaaactctttgccttaggactgcttccaggtttctaagcctgtcatgcca
gtcactactggagtggatgtagtaggaaggtaagggctggcttagcttag
tcaaaataaggagtgcctagtgctgcacgagtgtgcccaggctgaggtct
gatgcatgagcaaagtaagaggccaatgttcacatggggtggtgataaca
ataagatgttggtgacaattttaactaccagtatatacctactcagcctt
aggtccctcaggttcttgtgaaacaggccctgagaagaatgtgagaagct
acaagcatgacacaagaggcagatgaattgtagattctccttattccttt
ttgttatctgtaatttaaaaaacagaaaacttaacaataacagacaaaca
ccccttgtttataacaagcctggaaaacctgctatggtcccctttttctg
tccatggaagataccatgttttgcttggatgagaagtacccctcccgcta
cccacccccccacacacacaagctcacgtgtctgagcacttggtctccag
ctggtggtgaacttttggaggttggagtcttgctggaagaagtgagcttg
atgggattgggctgtgtgtgggagcacatggtgccattgcaggtggcgct
ggttacgactgggcaccaacatacataggcagtaaagtttttgcagagat
gaggtttgagattaatcaatcagagagatacaa
tttatttttaaaaaggatctattttatttttaagtgttgtgtgtgtatgt
gtgtgtgtgtatctctctctctctctctctctctctctctctctctctct
ctctctctgtgtgtgtgtgtgtgtatctgtctctgtctctgtctctctct
gtgtgagagagagagagtgagtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117584465_117585552
seq2: B6Ng01-141K08.b_49_1131

seq1  GAATTCTAAACTTACTTTGCTAAGCTTGCCCTGAGATTTCTAACTCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACTTACTTTGCTAAGCTTGCCCTGAGATTTCTAACTCTATG  50

seq1  TAGTAGATAGTAAAGCCTGGTTTCTTTTACTATCTCTCTTACAATACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATAGTAAAGCCTGGTTTCTTTTACTATCTCTCTTACAATACTAG  100

seq1  AGACAATTCTGAATGCCACTAAATAGGAAACATTCTTACTGAATTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCTGAATGCCACTAAATAGGAAACATTCTTACTGAATTCCAAG  150

seq1  CCCAGGGTCGGCTCAAGGACTATCTAGAGCATTGGTGAAGGCCAGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTCGGCTCAAGGACTATCTAGAGCATTGGTGAAGGCCAGAGAGC  200

seq1  AAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTTCTTGGAGGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTTCTTGGAGGCACCT  250

seq1  ATAATAAAACAATACTGAAAGAAAGCAGATCCATTCGCCAGGACAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAACAATACTGAAAGAAAGCAGATCCATTCGCCAGGACAAGTTT  300

seq1  GGAGCAATCATTATATGGGATGCCACGGTTCCAGGAGACTAAGTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATCATTATATGGGATGCCACGGTTCCAGGAGACTAAGTTTCTGT  350

seq1  GAAACTCTTTGCCTTAGGACTGCTTCCAGGTTTCTAAGCCTGTCATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTTGCCTTAGGACTGCTTCCAGGTTTCTAAGCCTGTCATGCCA  400

seq1  GTCACTACTGGAGTGGATGTAGTAGGAAGGTAAGGGCTGGCTTAGCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTACTGGAGTGGATGTAGTAGGAAGGTAAGGGCTGGCTTAGCTTAG  450

seq1  TCAAAATAAGGAGTGCCTAGTGCTGCACGAGTGTGCCCAGGCTGAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAGGAGTGCCTAGTGCTGCACGAGTGTGCCCAGGCTGAGGTCT  500

seq1  GATGCATGAGCAAAGTAAGAGGCCAATGTTCACATGGGGTGGTGATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGAGCAAAGTAAGAGGCCAATGTTCACATGGGGTGGTGATAACA  550

seq1  ATAAGATGTTGGTGACAATTTTAACTACCAGTATATACCTACTCAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGTTGGTGACAATTTTAACTACCAGTATATACCTACTCAGCCTT  600

seq1  AGGTCCCTCAGGTTCTTGTGAAACAGGCCCTGAGAAGAATGTGAGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTCAGGTTCTTGTGAAACAGGCCCTGAGAAGAATGTGAGAAGCT  650

seq1  ACAAGCATGACACAAGAGGCAGATGAATTGTAGATTCTCCTTATTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATGACACAAGAGGCAGATGAATTGTAGATTCTCCTTATTCCTTT  700

seq1  TTGTTATCTGTAATTTAAAAAACAGAAAACTTAACAATAACAGACAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTGTAATTTAAAAAACAGAAAACTTAACAATAACAGACAAACA  750

seq1  CCCCTTGTTTATAACAAGCCTGGAAAACCTGCTATGGTCCCCTTTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTTTATAACAAGCCTGGAAAACCTGCTATGGTCCCCTTTTTCTG  800

seq1  TCCATGGAAGATACCATGTTTTGCTTGGATGAGAAGTACCCCTCCCGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCATGGAAGATACCATGTTTTGCTTGGATGAGAAGTACCCCTCCCGCTA  850

seq1  CCCACCCCCCCACACACACAAGCTCACGTGTCTGAGCACTTGGTCTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCCACACACACAAGCTCACGTGTCTGAGCACTTGGTCTCCAG  900

seq1  CTGGTGGTGAACTCTTGGAGG-TGGAGCCTTGCTGGAAGAAGTGAGC-TG  948
      ||||||||||||| ||||||| ||||| ||||||||||||||||||| ||
seq2  CTGGTGGTGAACTTTTGGAGGTTGGAGTCTTGCTGGAAGAAGTGAGCTTG  950

seq1  ATGGGATTGGGCTGTGTGTGGGAAGCCACAT-GTGCCATTGCAGGGTGGC  997
      |||||||||||||||||||||||   ||||| ||||||||||| ||||||
seq2  ATGGGATTGGGCTGTGTGTGGGA--GCACATGGTGCCATTGCA-GGTGGC  997

seq1  GCTGGTTACCACTGGCCACCACACATACATAGGCAGTAAAGTTTTTTGCC  1047
      ||||||||| ||||| ||||| ||||||||||||||||||| ||||||| 
seq2  GCTGGTTACGACTGGGCACCA-ACATACATAGGCAGTAAAG-TTTTTGCA  1045

seq1  AAGATGAGGTTTTGAGAATTAATCAATCAGATGAGAGACAA  1088
       |||||||| |||||| |||||||||||||| |||| ||||
seq2  GAGATGAGG-TTTGAG-ATTAATCAATCAGA-GAGATACAA  1083

seq1: chr9_117613084_117613371
seq2: B6Ng01-141K08.g_128_253 (reverse)

seq1  ACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGACAGAGACAGAGACAGAGAGATAGAGGCAGACAGAGAGACAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGACAGAGAGGTGACATCAACATACAGAGAGACATATGCAGAGAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTACACAGAAAGATGTGTATC-CACACACACAGAGGAGAGATACACA  199
           ||||| |   |  | | || | | ||||||   |||||| ||| |
seq2  -----ACACACACTCA-CTCTCTCTCTCTCACACA---GAGAGAGACAGA  41

seq1  CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGA  249
       ||| | ||| | ||||||||||||||||    |||||||||||||||||
seq2  GACAGAGACAGATACACACACACACACAC----AGAGAGAGAGAGAGAGA  87

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCACACAC  288
      ||||||||||||||||||||||||||||||| |||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACACACAC  126