BAC Information

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BAC

Clone NameB6Ng01-141L04
Chromosome9 (Build37)
Map Location 19,179,331 - 19,301,229
singlet/doubletdoublet
Overlap geneOlfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851
Upstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697
Downstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141L04.bB6Ng01-141L04.g
ACCDH940090DH940091
length1,1331,096
definitionDH940090|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L04, 5' end.DH940091|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,300,052 - 19,301,229)(19,179,331 - 19,180,438)
sequence
gaattctgaaatacctgtttggtttgcagattccatgtatatgctttaat
attgacaaaatgtgcaatgaaaatagattattttgtgataaatagcaata
ccacattaatataggacagatataaacataatttaatattttgacttact
tttaacgatttcaaagataatgagatataatgcatatttaaataaatgtt
ctcactgaagcttggaaagtaagacttccaggtaaaatggacttcctgct
cttgcataggatacaggtttgtttctccatattgttgtctggaagctcac
aactttctgtgacaagctctagaatttatgatttttttctgtcttctaaa
aagtatgatctcacatgtggtatttgaaaactgacacagacacatgctaa
gaaatgaaaattaagaatatatatatatatatatatatatatatattctt
tgatttttttttcctctaaagcttgaaaaacagtgcatataaaataaaac
ctttcttagttaaaagatgaactacaaaatacttcaggattttctctata
gcctgcctctacttctcctgttcatttgtgttctaatatctattcaatct
atagaataaaaaggtatttgcaaatatcttgacaagtgatgagacttcat
tgagtaataatgcacagtttttttcctttaaaggtatccacactttcaca
caaaatggcagactgcaatgaatgtgtcaaactcaaaatcaatagcaata
gccaaataatttggcttaagtcaaaatcttctcttattattctccttagt
tttgggtgaacttgttcatgaatttgatgtacttatgagatgatagcata
gaaccaatagacacaaaccagcagaggaaaactccgatccttgctctttt
tgttcaacttcagtctatgaaattctgcacctatgtctcagaaatgtata
attaccagtcataatcgtcacagactacaatattttcacattagtattaa
ttcaatgtagtctaggtttcttcctgtcggcctctaatactatatgacct
aagaaatgcagaacatcatcaggaaatttggtaattgtaatctgccaact
ccacctcataggtgctgtccctgaaataggaat
gaattctgcctctatggaagacatgaactactcaagtcctaaacaattaa
catatcacagaaagcaagatacctttgtgataagttttcccaaagctttc
ttcatgtctctatttcttaggctatagataaaagggttcaacatttgagg
gagcactgtgtacatcatataagacactgtagttatctgaggggaaacag
taattgcagaacagatgtatactcccactgctgcaccatagaataaggat
acaactacaaaatgtgacccacacgtagaaaaggctttgtatcttcctct
cagggaagagattttcaaaatagaagagacaattcgagtataagagaaaa
tgattccagagattggaattccaccaaatataaatgttgcaagatatatg
aggatataattgatgagagtatcagaacaggcaagcttgatgacttgagc
aagctcacagaagaacagaggaagttcattatttgtgcaaaatgacaacc
gcagtatcatcagacactgtaataagctgttcgcagtgctaatgatcaag
gacaatagaatcagcaaaccacagaattggggattcataattactgtgta
attcaggggatgacaaatagctgcatagcggtcataggccattgcagcaa
ggacactgctttctaatacagcgaaactcaaaacaaagcaggcctgagtg
aggcaacctgtgtaactgatgctatgatcctgtgtgtggatgttcttcaa
catgtttgggacagtggttgtacttaggcagatgtcagtaaatgaaagct
tggagagaaagagatacattggtgtttgtagatgggagtcagagctgaca
gcaatgatgatgagcaatttcccacaattgtaaccagatatgtaaacata
aagaagccaaagaggaggggctctactgtaggatcatagtttagtctcat
cagaataaagtaggatgtgcctgtttggtttccaggttccatgtgctgat
cacctagtagaaatacaaagtaaatcagatgatggacacatgctcattgg
ggattattttagaaataattttaacctcactagaagtattcctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19300052_19301229
seq2: B6Ng01-141L04.b_48_1180 (reverse)

seq1  ATTCCTTTATTTTTCAGTGACAGCACTTATGAGGTGGAAGATTATGGGCA  50
      |||||    | |||||| |||||||| |||||||||||      | ||||
seq2  ATTCC----TATTTCAGGGACAGCACCTATGAGGTGGA-----GTTGGCA  41

seq1  GAATTAACAAATTTTAACTCAAATTTACCTGAAATGATGTTCTGCATTTC  100
      ||  | ||||   |||   ||||||| ||||  |||||||||||||||||
seq2  GA--TTACAA---TTA--CCAAATTT-CCTG--ATGATGTTCTGCATTTC  81

seq1  TTTAAGGTTCATTAATAAGTAAATTTTAGAGTGCATAAAGTGAAAGAAAA  150
      ||  ||| ||||  || ||||    |||||| ||  | |  | |||||| 
seq2  TT--AGG-TCAT--AT-AGTA----TTAGAG-GCCGACA--GGAAGAAAC  118

seq1  CTTAAGACTACATTTGAAATTAAATACTAAAATGTGAAAATATTGTTATG  200
      ||  |||||||| |||||  | ||||||  ||||||||||||||||   |
seq2  CT--AGACTACA-TTGAA--TTAATACT--AATGTGAAAATATTGT--AG  159

seq1  TCTGTGACGATTTATGACTGGTAATTATACATTTTCTGGAGACATAGGTG  250
      |||||||||| |||||||||||||||||||| ||||| ||||||||||||
seq2  TCTGTGACGA-TTATGACTGGTAATTATACA-TTTCT-GAGACATAGGTG  206

seq1  CAGAATGTTCATAGACTGAAGTTGAACAAAAAAGAGCAAGGATCGGAGTT  300
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAAT-TTCATAGACTGAAGTTGAAC-AAAAAGAGCAAGGATCGGAGTT  254

seq1  TTCCTCTGCTGG-TTGTGTCTATTGGTTCTATGCTATCATCTCATAAGTA  349
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCTGGTTTGTGTCTATTGGTTCTATGCTATCATCTCATAAGTA  304

seq1  CATCAAATTCATGAACAAGTTCACCCAAAACTAAGGAGAATAATAAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTCATGAACAAGTTCACCCAAAACTAAGGAGAATAATAAGAGA  354

seq1  AGATTTTGACTTAAGCCAAATTATTTGGCTATTGCTATTGATTTTGAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGACTTAAGCCAAATTATTTGGCTATTGCTATTGATTTTGAGTT  404

seq1  TGACACATTCATTGCAGTCTGCCATTTTGTGTGAAAGTGTGGATACCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTCATTGCAGTCTGCCATTTTGTGTGAAAGTGTGGATACCTTT  454

seq1  AAAGGAAAAAAACTGTGCATTATTACTCAATGAAGTCTCATCACTTGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAACTGTGCATTATTACTCAATGAAGTCTCATCACTTGTCA  504

seq1  AGATATTTGCAAATACCTTTTTATTCTATAGATTGAATAGATATTAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGCAAATACCTTTTTATTCTATAGATTGAATAGATATTAGAAC  554

seq1  ACAAATGAACAGGAGAAGTAGAGGCAGGCTATAGAGAAAATCCTGAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAACAGGAGAAGTAGAGGCAGGCTATAGAGAAAATCCTGAAGTA  604

seq1  TTTTGTAGTTCATCTTTTAACTAAGAAAGGTTTTATTTTATATGCACTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTTCATCTTTTAACTAAGAAAGGTTTTATTTTATATGCACTGT  654

seq1  TTTTCAAGCTTTAGAGGAAAAAAAAATCAAAGAATATATATATATATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGCTTTAGAGGAAAAAAAAATCAAAGAATATATATATATATATA  704

seq1  TATATATATATATTCTTAATTTTCATTTCTTAGCATGTGTCTGTGTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATTCTTAATTTTCATTTCTTAGCATGTGTCTGTGTCAGT  754

seq1  TTTCAAATACCACATGTGAGATCATACTTTTTAGAAGACAGAAAAAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACCACATGTGAGATCATACTTTTTAGAAGACAGAAAAAAATC  804

seq1  ATAAATTCTAGAGCTTGTCACAGAAAGTTGTGAGCTTCCAGACAACAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTAGAGCTTGTCACAGAAAGTTGTGAGCTTCCAGACAACAATA  854

seq1  TGGAGAAACAAACCTGTATCCTATGCAAGAGCAGGAAGTCCATTTTACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAACAAACCTGTATCCTATGCAAGAGCAGGAAGTCCATTTTACCT  904

seq1  GGAAGTCTTACTTTCCAAGCTTCAGTGAGAACATTTATTTAAATATGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTTACTTTCCAAGCTTCAGTGAGAACATTTATTTAAATATGCAT  954

seq1  TATATCTCATTATCTTTGAAATCGTTAAAAGTAAGTCAAAATATTAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCATTATCTTTGAAATCGTTAAAAGTAAGTCAAAATATTAAATT  1004

seq1  ATGTTTATATCTGTCCTATATTAATGTGGTATTGCTATTTATCACAAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATATCTGTCCTATATTAATGTGGTATTGCTATTTATCACAAAAT  1054

seq1  AATCTATTTTCATTGCACATTTTGTCAATATTAAAGCATATACATGGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTTCATTGCACATTTTGTCAATATTAAAGCATATACATGGAAT  1104

seq1  CTGCAAACCAAACAGGTATTTCAGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  CTGCAAACCAAACAGGTATTTCAGAATTC  1133

seq1: chr9_19179331_19180438
seq2: B6Ng01-141L04.g_70_1165

seq1  GAATTCTGCCTCTATGGAAGACATGAACTACTCAAGTCCTAAACAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCTATGGAAGACATGAACTACTCAAGTCCTAAACAATTAA  50

seq1  CATATCACAGAAAGCAAGATACCTTTGTGATAAGTTTTCCCAAAGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACAGAAAGCAAGATACCTTTGTGATAAGTTTTCCCAAAGCTTTC  100

seq1  TTCATGTCTCTATTTCTTAGGCTATAGATAAAAGGGTTCAACATTTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTCTATTTCTTAGGCTATAGATAAAAGGGTTCAACATTTGAGG  150

seq1  GAGCACTGTGTACATCATATAAGACACTGTAGTTATCTGAGGGGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGTGTACATCATATAAGACACTGTAGTTATCTGAGGGGAAACAG  200

seq1  TAATTGCAGAACAGATGTATACTCCCACTGCTGCACCATAGAATAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCAGAACAGATGTATACTCCCACTGCTGCACCATAGAATAAGGAT  250

seq1  ACAACTACAAAATGTGACCCACACGTAGAAAAGGCTTTGTATCTTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACAAAATGTGACCCACACGTAGAAAAGGCTTTGTATCTTCCTCT  300

seq1  CAGGGAAGAGATTTTCAAAATAGAAGAGACAATTCGAGTATAAGAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGAGATTTTCAAAATAGAAGAGACAATTCGAGTATAAGAGAAAA  350

seq1  TGATTCCAGAGATTGGAATTCCACCAAATATAAATGTTGCAAGATATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAGAGATTGGAATTCCACCAAATATAAATGTTGCAAGATATATG  400

seq1  AGGATATAATTGATGAGAGTATCAGAACAGGCAAGCTTGATGACTTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAATTGATGAGAGTATCAGAACAGGCAAGCTTGATGACTTGAGC  450

seq1  AAGCTCACAGAAGAACAGAGGAAGTTCATTATTTGTGCAAAATGACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACAGAAGAACAGAGGAAGTTCATTATTTGTGCAAAATGACAACC  500

seq1  GCAGTATCATCAGACACTGTAATAAGCTGTTCGCAGTGCTAATGATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCATCAGACACTGTAATAAGCTGTTCGCAGTGCTAATGATCAAG  550

seq1  GACAATAGAATCAGCAAACCACAGAATTGGGGATTCATAATTACTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGAATCAGCAAACCACAGAATTGGGGATTCATAATTACTGTGTA  600

seq1  ATTCAGGGGATGACAAATAGCTGCATAGCGGTCATAGGCCATTGCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGGATGACAAATAGCTGCATAGCGGTCATAGGCCATTGCAGCAA  650

seq1  GGACACTGCTTTCTAATACAGCGAAACTCAAAACAAAGCAGGCCTGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGCTTTCTAATACAGCGAAACTCAAAACAAAGCAGGCCTGAGTG  700

seq1  AGGCAACCTGTGTAACTGATGCTATGATCCTGTGTGTGGATGTTCTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACCTGTGTAACTGATGCTATGATCCTGTGTGTGGATGTTCTTCAA  750

seq1  CATGTTTGGGACAGTGGTTGTACTTAGGCAGATGTCAGTAAATGAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGGACAGTGGTTGTACTTAGGCAGATGTCAGTAAATGAAAGCT  800

seq1  TGGAGAGAAAGAGATACATTGGTGTTTGTAGATGGGAGTCAGAGCTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAAGAGATACATTGGTGTTTGTAGATGGGAGTCAGAGCTGACA  850

seq1  GCAATGATGATGAGCAAATTTCCCACAATTGTAACCAGATATGTAAACAT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAATGATGATGAGC-AATTTCCCACAATTGTAACCAGATATGTAAACAT  899

seq1  AAAGAAGCCAAAGATGAGGGGCTCTACTGTAGGATCATAGTTTAGTCTCA  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCAAAGAGGAGGGGCTCTACTGTAGGATCATAGTTTAGTCTCA  949

seq1  TCAGAATAAAGTAGGATGTGCCTGTTTGGTTTCCAGGTTCCATGTTGCTG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGAATAAAGTAGGATGTGCCTGTTTGGTTTCCAGGTTCCATG-TGCTG  998

seq1  ATCAACCTAGTAGAAATACAAAGTAAAATCAGATGTATGGACACAATGCT  1050
      ||| |||||||||||||||||||| |||||||||| |||||||| |||| 
seq2  ATC-ACCTAGTAGAAATACAAAGT-AAATCAGATG-ATGGACAC-ATGC-  1043

seq1  TCATTTGGGACTATTTTAGAAATAAAATTTTTACTCTCACTTAAGATGTA  1100
      ||||| |||| ||||||||||||||   |||||  ||||||  ||| |||
seq2  TCATTGGGGATTATTTTAGAAATAA---TTTTAACCTCACT--AGAAGTA  1088

seq1  TTCCTCAA  1108
      ||||||||
seq2  TTCCTCAA  1096