BAC Information

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BAC

Clone NameB6Ng01-141O24
Chromosome9 (Build37)
Map Location 52,416,671 - 52,566,452
singlet/doubletdoublet
Overlap geneAI593442, Gm1715
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141O24.bB6Ng01-141O24.g
ACCDH940264DH940265
length1,029886
definitionDH940264|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O24, 5' end.DH940265|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,416,671 - 52,417,675)(52,565,754 - 52,566,452)
sequence
gaattcagggagggttgggttatggtatgttcttctgtaactcctcatgt
gagacgaacataccagtagattgacagatctacatgacatccctcccata
tatgccatatccaataaacagtttcgtagggaaagcagattgattggaga
agaatcaatcaataatttaaaatgttttaaacctcaacagtaactgatgc
tgtgcaaaacaaagtgagagtgacaggatgtcatcattgtctgctgtttg
aagtgttggaagtggcagtatttaatacagtagaaagggtgtggttgttt
tgccaacaacaataatatacctttgttgaaagaaacagcttgaccagggt
ggacttgatactctgcttctgggtcactgagcctgcgcatacccactaag
gctaagatcttaatcctaacctgaggataagactaatacagtaagaggaa
gagactctcccatcacatgagcaataaacctctttccagttgtaccaact
tgagtcatgctttcctaattattagcataactgaaagaatgctagccact
tcatttagtaaatctgtaacacctatttgtactgacaagctagttcttgg
caatgcaaactggaaacaagctttccagagagaaatgaacaaaaatacac
tagaaaattaaaaaaaaaatcatacatttcttttaatctgcaatctcaga
ttggggcagtttatttctgaggagacaatcatagataatcaaaagtttat
gtataaatgaatatttcatagtagcgattttaaaagatataaattaggaa
ttaaataggccaaaacgatcaacttaattagtttttatataaactaaatt
gggccacatttgcctgaagcaatcattaaaatttgtgccattaataatat
ttaagcaatgggccatgaatgaaaaaaaagaaatacaactcaatataaaa
taattatatttggctaatgcggtattataggcagaattttatttttcttt
tttggacctgtggtttaccaaatttgtct
gaattcaaggctagctagccagtcagaggcatatgttgaagctatgtttt
taaaacaaacagacatgaatttctatattctgggacattcttgggaagtt
tctcaatatataagcactcatttatctcttttttttgagcttttaaaaat
cattttatgttagatgggagagaatggagttttatgaagaagcccttacc
tgagaattcgttctctctctccttccttcattccttaattctttcccttc
tctcctggtgatttttatttacatattttagtaataatattggggctaga
ggaattactcagtggttaaaagcactagctgcttttgcagaggacccaga
tcccattcctcaaatccacatggcagctcacagtcatttgtaactccagt
tccagggcacctgatgttctctctggcctctgtgaacactaagtatacac
atagtacatgtctttacacgcaaaactaaatcatatatatatatatatac
acacacacatatatgctatatatatatattcatatgtttgttgcacaaag
taatggatttaatgctatatttctatataggtacatttatggtgtccttt
tgctctcctttaacctgggcatttctctcagtccctcataattcctcttt
tcatttttagttcttttttcaatttttccatgtgtgagaaagatcatgtg
atacttattattctgtgtttggcttctttttgattaacatatgccctctt
gctgtaaataaaaggatctttatttttctttgtgactgaataaatacccc
cattgtaggtatatacatacatacatacatacatatatacatacatatat
tttcatgtatatatttcattcatatgtgataagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52416671_52417675
seq2: B6Ng01-141O24.b_50_1078

seq1  GAATTCAGGGAGGGTTGGGTTATGGTATGTTCTTCTGTAACTCCTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGGGTTGGGTTATGGTATGTTCTTCTGTAACTCCTCATGT  50

seq1  GAGACGAACATACCAGTAGATTGACAGATCTACATGACATCCCTCCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAACATACCAGTAGATTGACAGATCTACATGACATCCCTCCCATA  100

seq1  TATGCCATATCCAATAAACAGTTTCGTAGGGAAAGCAGATTGATTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATATCCAATAAACAGTTTCGTAGGGAAAGCAGATTGATTGGAGA  150

seq1  AGAATCAATCAATAATTTAAAATGTTTTAAACCTCAACAGTAACTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAATCAATAATTTAAAATGTTTTAAACCTCAACAGTAACTGATGC  200

seq1  TGTGCAAAACAAAGTGAGAGTGACAGGATGTCATCATTGTCTGCTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAACAAAGTGAGAGTGACAGGATGTCATCATTGTCTGCTGTTTG  250

seq1  AAGTGTTGGAAGTGGCAGTATTTAATACAGTAGAAAGGGTGTGGTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGGAAGTGGCAGTATTTAATACAGTAGAAAGGGTGTGGTTGTTT  300

seq1  TGCCAACAACAATAATATACCTTTGTTGAAAGAAACAGCTTGACCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAACAATAATATACCTTTGTTGAAAGAAACAGCTTGACCAGGGT  350

seq1  GGACTTGATACTCTGCTTCTGGGTCACTGAGCCTGCGCATACCCACTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGATACTCTGCTTCTGGGTCACTGAGCCTGCGCATACCCACTAAG  400

seq1  GCTAAGATCTTAATCCTAACCTGAGGATAAGACTAATACAGTAAGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATCTTAATCCTAACCTGAGGATAAGACTAATACAGTAAGAGGAA  450

seq1  GAGACTCTCCCATCACATGAGCAATAAACCTCTTTCCAGTTGTACCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCCCATCACATGAGCAATAAACCTCTTTCCAGTTGTACCAACT  500

seq1  TGAGTCATGCTTTCCTAATTATTAGCATAACTGAAAGAATGCTAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATGCTTTCCTAATTATTAGCATAACTGAAAGAATGCTAGCCACT  550

seq1  TCATTTAGTAAATCTGTAACACCTATTTGTACTGACAAGCTAGTTCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTAAATCTGTAACACCTATTTGTACTGACAAGCTAGTTCTTGG  600

seq1  CAATGCAAACTGGAAACAAGCTTTCCAGAGAGAAATGAAC-AAAATACAC  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATGCAAACTGGAAACAAGCTTTCCAGAGAGAAATGAACAAAAATACAC  650

seq1  TAGAAA--TTAAAAAAAAATCATACATTTCTTTTAATCTGCAATCTCAGA  697
      ||||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTAAAAAAAAAATCATACATTTCTTTTAATCTGCAATCTCAGA  700

seq1  TT-GGGCAGTTTA-TTCTGAGGAGACAATCATAGATAATCAAA--GTTAT  743
      || |||||||||| |||||||||||||||||||||||||||||   ||||
seq2  TTGGGGCAGTTTATTTCTGAGGAGACAATCATAGATAATCAAAAGTTTAT  750

seq1  GTATAAATGAATA-TTCATAGTAGCGATTTTAAAAGATATAAATTA-GAA  791
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GTATAAATGAATATTTCATAGTAGCGATTTTAAAAGATATAAATTAGGAA  800

seq1  ATAAATA-GCCAAAACGATCAACTTAA-TAG-TTTTATAT-AACTAAAAT  837
       |||||| ||||||||||||||||||| ||| |||||||| ||||||| |
seq2  TTAAATAGGCCAAAACGATCAACTTAATTAGTTTTTATATAAACTAAATT  850

seq1  TGGCCACATTTGCCTGAAGCAATCATTAAAA-TTGTGCCATTAATAATAT  886
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGCCACATTTGCCTGAAGCAATCATTAAAATTTGTGCCATTAATAATAT  900

seq1  TT-AGCAAT-GGCCATGAATG-AAAAAAAGAAATACAACCCAATATAAAA  933
      || |||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  TTAAGCAATGGGCCATGAATGAAAAAAAAGAAATACAACTCAATATAAAA  950

seq1  TAATTAT-TTTGGCTA--GTGGGATTATAGGCAG-ATTTTA-TTTCCCTC  978
      ||||||| ||||||||  | || ||||||||||| |||||| ||| | | 
seq2  TAATTATATTTGGCTAATGCGGTATTATAGGCAGAATTTTATTTTTCTTT  1000

seq1  TATGGACCTGT-GTTTACCAAA-TTGTCT  1005
      | ||||||||| |||||||||| ||||||
seq2  TTTGGACCTGTGGTTTACCAAATTTGTCT  1029

seq1: chr9_52565754_52566452
seq2: B6Ng01-141O24.g_69_770 (reverse)

seq1  ATCACATGATCTTTCTCACACATGG-AAAATTG-AAAAAGAACTAAAAAT  48
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  ATCACATGATCTTTCTCACACATGGAAAAATTGAAAAAAGAACTAAAAAT  50

seq1  G-AAAGAGGAATTATGAGGGACTGAGAGAAATGCCCAGGTTAAAGGAGAG  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGAATTATGAGGGACTGAGAGAAATGCCCAGGTTAAAGGAGAG  100

seq1  CAAAAGGACACCATAAATGTACCTATATAGAAATATAGCATTAAATCCAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGACACCATAAATGTACCTATATAGAAATATAGCATTAAATCCAT  150

seq1  TACTTTGTGCAACAAACATATGAATATATATATATAGCATATATGTGTGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGCAACAAACATATGAATATATATATATAGCATATATGTGTGT  200

seq1  GTGTATATATATATATATATGATTTAGTTTTGCGTGTAAAGACATGTACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATATATATATATATGATTTAGTTTTGCGTGTAAAGACATGTACT  250

seq1  ATGTGTATACTTAGTGTTCACAGAGGCCAGAGAGAACATCAGGTGCCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATACTTAGTGTTCACAGAGGCCAGAGAGAACATCAGGTGCCCTG  300

seq1  GAACTGGAGTTACAAATGACTGTGAGCTGCCATGTGGATTTGAGGAATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGTTACAAATGACTGTGAGCTGCCATGTGGATTTGAGGAATGG  350

seq1  GATCTGGGTCCTCTGCAAAAGCAGCTAGTGCTTTTAACCACTGAGTAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGTCCTCTGCAAAAGCAGCTAGTGCTTTTAACCACTGAGTAATT  400

seq1  CCTCTAGCCCCAATATTATTACTAAAATATGTAAATAAAAATCACCAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCCCCAATATTATTACTAAAATATGTAAATAAAAATCACCAGGA  450

seq1  GAGAAGGGAAAGAATTAAGGAATGAAGGAAGGAGAGAGAGAACGAATTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAAAGAATTAAGGAATGAAGGAAGGAGAGAGAGAACGAATTCT  500

seq1  CAGGTAAGGGCTTCTTCATAAAACTCCATTCTCTCCCATCTAACATAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGGGCTTCTTCATAAAACTCCATTCTCTCCCATCTAACATAAAA  550

seq1  TGATTTTTAAAAGCTCAAAAAAAAGAGATAAATGAGTGCTTATATATTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAAAGCTCAAAAAAAAGAGATAAATGAGTGCTTATATATTGA  600

seq1  GAAACTTCCCAAGAATGTCCCAGAATATAGAAATTCATGTCTGTTTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCCAAGAATGTCCCAGAATATAGAAATTCATGTCTGTTTGTTT  650

seq1  TAAAAACATAGCTTCAACATATGCCTCTGACTGGCTAGCTAGCCTTGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATAGCTTCAACATATGCCTCTGACTGGCTAGCTAGCCTTGAAT  700

seq1  TC  699
      ||
seq2  TC  702