BAC Information

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BAC

Clone NameB6Ng01-142I07
Chromosome9 (Build37)
Map Location 20,846,526 - 20,969,054
singlet/doubletdoublet
Overlap geneGlp1, B230118G17Rik, Raver1, Tyk2, Cdc37
Upstream geneOlfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5
Downstream genePde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I07.bB6Ng01-142I07.g
ACCDH940698DH940699
length1,0261,100
definitionDH940698|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I07, 5' end.DH940699|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,968,030 - 20,969,054)(20,846,526 - 20,847,342)
sequence
gaattcaaataggcaagcttggaggcaaacgcccttacccactgagaatc
ccgctggcccaatcgccgccccctcttcttttaatttttaaagactttaa
gctgttcttcgaaaggtaaactgaggcaggtgggaggggtagctgggata
ggagagcattggagggtgaaacccacccctgacgttttcaggcgagtaaa
caatcggagccttttccccgcgtcccccgccctcagaaccccccttccgg
cacctaaatccggagttgccgtgactcacgctcccgcctccctcagcgcc
gtgccgagcgaacgagcaaagagcgagtgggaatccgagcgagtcgccat
ccctcctcccggctctggctgagccccgatggctgctgggctggggggtg
gagtgctgtgtgccctcccgtttctcacttccctcccaggctagatcgct
gctcaggtgctgcaatgtcccttggcccaagccctcgccccctacatcac
ctctcctggtcgtctagggggacaagccttgtattcttgcccccaccccc
gttcttattaacacacaggcaattgaacctttcccaatttccaacttcct
caaccgcttttctctagcaggaggggactcctagcgtgggtgaaggagcg
cggcataagaactggccccccaccaacagccccaggtgttccccaaagcc
agaactgtatctgttcccctacttttctcaggaaccttcccccaagcatt
tgcaagtgtcacgttgcccagctgttaccttgtaaccatgggccacagct
ctggacgagggtcatagggcggtgacctggaggtgtggactgggcaaggg
ctaggctacaggtatttgaaggctcaaggactgaggtgaatcaagctgga
cttgactaaatagaggctggagtggggggagggggactttactctcattc
tggaattaagtatcatggcttgggctggtggaatggcttcagtgggtaaa
gcacccgattgctctttctgaaggtc
gaattcagagatccaattgcctccgccttccaagtgctgggaataaaggc
ctgtgccaccatgcccattgagctggagctcctcgggaaaaaaatactta
gaagcgagactgtgtgctcagaagcttctagaaggctgtagagcctggtg
agccgttcccaggcctgtgctagcacgatacaggtggagacgatcaagcc
tgtcccagggccggtaattctcccccaaactaaggagggttcatttctct
ccaccaaaggttatgacagaggtagaggtggtttgcccagccacatactc
tccagacagctagggcctgtctgattcaaggagccagcgggccaggcgca
ccagggtgaaaacagccacatccacttttgtccctgagtaggtctgagca
gatcaggctcactgagtttatcgggggtggagaaatgtagggaggctcca
gggaagagctcctggtacggaaacatactgtctcagagaggatgactggg
agctacaggaactaattaagtgagcgcctcccatgcgtgctttgcagcca
accttgagctgtagagcaagcacctgatacaaatggatggagcgtccacg
ctgcacctgagcttgctcatgtctgactttagtatcttcttagttgtgaa
catctggtatcacgtgacacttgctgaggacaggcaacaacagactttca
gagagcttccccaatgtcatctctgtaacccaccgtttgttatgggatgg
tggctcgggatgttgccttgtcttgtcctctagaagaacaaacttatatg
tgtgtatgtatatgtatatacttatatataatatattatatatataaagc
atatgtactttaaatataacatataattacatacacatatataaaggaga
ttttaacagtggatcacaggtgatgatggtctagatggtccataatgcct
gtctaacaatagaagatccaaaaatctagtacttattcagtctacagctt
gatgtctctctgatcttcagtatatgtcagaattcttaagaagtagcttt
tatttgccatgtaagaaaatgaactttgctagcagaataaggacacaaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20968030_20969054
seq2: B6Ng01-142I07.b_49_1074 (reverse)

seq1  GACCTTC-GGAAGAGCAGTCGGGTGCTCTAACCCACTG-AGCCATCTCAC  48
      ||||||| | ||||||| ||||||||| | |||||||| ||||||  |||
seq2  GACCTTCAGAAAGAGCAATCGGGTGCT-TTACCCACTGAAGCCATTCCAC  49

seq1  CAGCCCAAGCCATGATACTTATTTCCAG-ATGAGAGTAAAGTCCCCCCTC  97
      ||||||||||||||||||||| |||||| ||||||||||||||||||  |
seq2  CAGCCCAAGCCATGATACTTAATTCCAGAATGAGAGTAAAGTCCCCCTCC  99

seq1  CCACACTCCAGCCTCTATTTAGTTCAAGTCCAGCTTGATTCACCTCAGTC  147
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCCACTCCAGCCTCTATTTAG-TCAAGTCCAGCTTGATTCACCTCAGTC  148

seq1  CTTGAGCCTTCAAATACCTGTAGCCTAGCCCTTGCCCAGTCCACACCTCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCTTCAAATACCTGTAGCCTAGCCCTTGCCCAGTCCACACCTCC  198

seq1  AGGTCACCGCCCTATGACCCTCGTCCAGAGCTGTGGCCCATGGTTACAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCGCCCTATGACCCTCGTCCAGAGCTGTGGCCCATGGTTACAAG  248

seq1  GTAACAGCTGGGCAACGTGACACTTGCAAATGCTTGGGGGAAGGTTCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCTGGGCAACGTGACACTTGCAAATGCTTGGGGGAAGGTTCCTG  298

seq1  AGAAAAGTAGGGGAACAGATACAGTTCTGGCTTTGGGGAACACCTGGGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAGGGGAACAGATACAGTTCTGGCTTTGGGGAACACCTGGGGC  348

seq1  TGTTGGTGGGGGGCCAGTTCTTATGCCGCGCTCCTTCACCCACGCTAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGGGGGGCCAGTTCTTATGCCGCGCTCCTTCACCCACGCTAGGA  398

seq1  GTCCCCTCCTGCTAGAGAAAAGCGGTTGAGGAAGTTGGAAATTGGGAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCCTGCTAGAGAAAAGCGGTTGAGGAAGTTGGAAATTGGGAAAG  448

seq1  GTTCAATTGCCTGTGTGTTAATAAGAACGGGGGTGGGGGCAAGAATACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTGCCTGTGTGTTAATAAGAACGGGGGTGGGGGCAAGAATACAA  498

seq1  GGCTTGTCCCCCTAGACGACCAGGAGAGGTGATGTAGGGGGCGAGGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCCCCCTAGACGACCAGGAGAGGTGATGTAGGGGGCGAGGGCTT  548

seq1  GGGCCAAGGGACATTGCAGCACCTGAGCAGCGATCTAGCCTGGGAGGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGGGACATTGCAGCACCTGAGCAGCGATCTAGCCTGGGAGGGAA  598

seq1  GTGAGAAACGGGAGGGCACACAGCACTCCACCCCCCAGCCCAGCAGCCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAACGGGAGGGCACACAGCACTCCACCCCCCAGCCCAGCAGCCAT  648

seq1  CGGGGCTCAGCCAGAGCCGGGAGGAGGGATGGCGACTCGCTCGGATTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTCAGCCAGAGCCGGGAGGAGGGATGGCGACTCGCTCGGATTCCC  698

seq1  ACTCGCTCTTTGCTCGTTCGCTCGGCACGGCGCTGAGGGAGGCGGGAGCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTCTTTGCTCGTTCGCTCGGCACGGCGCTGAGGGAGGCGGGAGCG  748

seq1  TGAGTCACGGCAACTCCGGATTTAGGTGCCGGAAGGGGGGTTCTGAGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACGGCAACTCCGGATTTAGGTGCCGGAAGGGGGGTTCTGAGGGC  798

seq1  GGGGGACGCGGGGAAAAGGCTCCGATTGTTTACTCGCCTGAAAACGTCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACGCGGGGAAAAGGCTCCGATTGTTTACTCGCCTGAAAACGTCAG  848

seq1  GGGTGGGTTTCACCCTCCAATGCTCTCCTATCCCAGCTACCCCTCCCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTTTCACCCTCCAATGCTCTCCTATCCCAGCTACCCCTCCCACC  898

seq1  TGCCTCAGTTTACCTTTCGAAGAACAGCTTAAAGTCTTTAAAAATTAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTTTACCTTTCGAAGAACAGCTTAAAGTCTTTAAAAATTAAAA  948

seq1  GAAGAGGGGGCGGCGATTGGGCCAGCGGGATTCTCAGTGGGTAAGGGCGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGGCGGCGATTGGGCCAGCGGGATTCTCAGTGGGTAAGGGCGT  998

seq1  TTGCCTCCAAGCTTGCCTATTTGAATTC  1025
      ||||||||||||||||||||||||||||
seq2  TTGCCTCCAAGCTTGCCTATTTGAATTC  1026

seq1: chr9_20846526_20847342
seq2: B6Ng01-142I07.g_350_1166

seq1  TGCCCAGCCACATACTCTCCAGACAGCTAGGGCCTGTCTGATTCAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCACATACTCTCCAGACAGCTAGGGCCTGTCTGATTCAAGGAG  50

seq1  CCAGCGGGCCAGGCGCACCAGGGTGAAAACAGCCACATCCACTTTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGGCCAGGCGCACCAGGGTGAAAACAGCCACATCCACTTTTGTCC  100

seq1  CTGAGTAGGTCTGAGCAGATCAGGCTCACTGAGTTTATCGGGGGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGGTCTGAGCAGATCAGGCTCACTGAGTTTATCGGGGGTGGAGA  150

seq1  AATGTAGGGAGGCTCCAGGGAAGAGCTCCTGGTACGGAAACATACTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGGAGGCTCCAGGGAAGAGCTCCTGGTACGGAAACATACTGTCT  200

seq1  CAGAGAGGATGACTGGGAGCTACAGGAACTAATTAAGTGAGCGCCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGATGACTGGGAGCTACAGGAACTAATTAAGTGAGCGCCTCCCA  250

seq1  TGCGTGCTTTGCAGCCAACCTTGAGCTGTAGAGCAAGCACCTGATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCTTTGCAGCCAACCTTGAGCTGTAGAGCAAGCACCTGATACAAA  300

seq1  TGGATGGAGCGTCCACGCTGCACCTGAGCTTGCTCATGTCTGACTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGCGTCCACGCTGCACCTGAGCTTGCTCATGTCTGACTTTAGT  350

seq1  ATCTTCTTAGTTGTGAACATCTGGTATCACGTGACACTTGCTGAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTAGTTGTGAACATCTGGTATCACGTGACACTTGCTGAGGACAG  400

seq1  GCAACAACAGACTTTCAGAGAGCTTCCCCAATGTCATCTCTGTAACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACAGACTTTCAGAGAGCTTCCCCAATGTCATCTCTGTAACCCAC  450

seq1  CGTTTGTTATGGGATGGTGGCTCGGGATGTTGCCTTGTCTTGTCCTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTATGGGATGGTGGCTCGGGATGTTGCCTTGTCTTGTCCTCTAG  500

seq1  AAGAACAAACTTATATGTGTGTATGTATATGTATATACTTATATATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAACTTATATGTGTGTATGTATATGTATATACTTATATATAATA  550

seq1  TATTATATATATAAAGCATATGTAC-TTAAATATAACATATAATTACATA  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATTATATATATAAAGCATATGTACTTTAAATATAACATATAATTACATA  600

seq1  CACATATATAAAGGAGATTTTAACAGTGGATCACAGGTGATGATGGTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATAAAGGAGATTTTAACAGTGGATCACAGGTGATGATGGTCTA  650

seq1  GATGGTCCAATAATGCCTGTCTAACAATAGAAGATCCAAAAATCTAGTAC  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCC-ATAATGCCTGTCTAACAATAGAAGATCCAAAAATCTAGTAC  699

seq1  TTATTCAGTCTACAAGGCTGGATGTCTCCTCTGATCTTCAGTATATGTCA  749
      ||||||||||||||  ||| ||||||| ||||||||||||||||||||||
seq2  TTATTCAGTCTACA--GCTTGATGTCT-CTCTGATCTTCAGTATATGTCA  746

seq1  GAATCCTAAAGAAGTAGGCTCTA-TTGCCA-GTGAAGAAATGGAC-TTGC  796
      |||| || |||||||||  | || |||||| || |  ||||| || ||||
seq2  GAATTCTTAAGAAGTAGCTTTTATTTGCCATGTAAGAAAATGAACTTTGC  796

seq1  TAGCAAGAATAAGGACA-AACA  817
      |||| |||||||||||| ||||
seq2  TAGC-AGAATAAGGACACAACA  817