BAC Information

Click to search

BAC

Clone NameB6Ng01-142L21
Chromosome9 (Build37)
Map Location 79,449,566 - 79,592,632
singlet/doubletdoublet
Overlap geneCol12a1
Upstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509, LOC666479
Downstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L21.bB6Ng01-142L21.g
ACCDH940861DH940862
length1,1971,014
definitionDH940861|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L21, 5' end.DH940862|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,591,415 - 79,592,632)(79,449,566 - 79,450,621)
sequence
gaattccaaaggccatgatacatttatggtaaataacaatttcagttaaa
atggctcagctggagccaagtgcttacaaattagttccattctgtgttcc
tagtgatttgctttgttttgttttttacgttgtgaggggttgtaaaagag
ccatgttatcacaagaggggagtatgggacacagaagaaagggttactat
ttctcttgttatcacgtaactaaatatttctacaaatctcaatttaaaag
gctaaggatagctctagtgggaaagcctgcctctttggaactcctatatc
attcctcagatacacatccagtaacgagcagactttgcatgtgtactggc
tggttttgtgtcaacttgacacagctggagttatcacagagaaaggagct
tcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaa
ttagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggct
ggtagtcttgggttctataagagagcaggctgagcaagccagtaaggaac
atccctccatggcctctgcatcagctcctgcttcctgacctgcttgagtt
ccagtcctgacttcctttggtgatgaagagcagtatggaattgtaagctg
aataaacccttttctccctaacttgcttcttggtcatgatgtttgtgcag
gaatagaaaccctgactaagacagcatactttaattatttttggaaggaa
cgaacagtttgagcatcttctgactgcagtctgacttcgtaatatttgag
aacgtttttatagaaatttgatcttgatttttttctttattcttaactta
catgcaaaattgtatttataatgtacacattttttttaattaaattttct
ttaagatttgtttatatttatttttaatatgtatacatgtatctgtatat
ggatatatccaggtacttcagagtcagaaaaagagggattcagagttctg
gagctgcagctacaggtggttgtgagccaccgaagtggtgctgggagctg
agctcagttctgtgcaatagggtggttctctagctgttgagcatacctct
cagtccaaacatgtaattggataattccacatgtggagtttcaattaaac
tgtaacattaaggcaataaccttttgttgagaaaaacactgaaaatc
gaattctttcacttgtctgcattttgtttgctattatatgtagattggat
tgcagaaataattttcatatatattttcagcattctataacactatttca
tttttttagtctctctgttcctttaggtaaaaataataaataaaaagaaa
ggaaagaaaaaaaaaaaagaaacctaatgaattggtagcattcatttaac
tccccaaagagttgtagagaagttaatggtgtggtttggcaaatccagaa
atacaggaggggaaaatggtcacttaaatcctaattatggaaagtgtttt
gtgctttagaagactgtcgcatactcaaaatacagaaccgaaaatgttgg
catctccacgagatccctatctcgacctgccttcaatcctagggctcttt
atttctgggaaactggagtccttatgatggcagcaacatacctggatagc
cttgcccattgtacgggatgctggcacactgggatgaatcacaatatcca
ggaggacctggagggcctcggatacctgagtttcctggacgaccaggggg
accaggagggcctcttgaacctgtagaccctggtggacccgttcgggatt
cgccttgtggacctagtgtgaagcaaaataataataataataataataat
aataataatatatttccatttcttgtcaaaaacacctgaggcagattcca
atactcatgggtaaagtggtgcttcatatgattgacataaatgtaaagat
ttcgccacagggcttgcattaagtgtaaagatacagaaacttcagaaaaa
gaagaaaaacatggagcagcaagatggcttggaaagtaaaggtgcttgct
gccaagcctgacaatcagagttaagttcccaggacccacaaagtgaagaa
aagaccaactcccacaaattgtctctgactcacatgcacacatggacatg
tgtaccacacatacacacacacatgccccccgacagatgatgatgatgat
gatggatagatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79591415_79592632
seq2: B6Ng01-142L21.b_42_1238 (reverse)

seq1  GATTTTCAGTGTTTTCATC-ACAAAAAGTATATGCATTAATG-TACATGT  48
      |||||||||||||||  || |||||| ||   ||| |||||| |||| ||
seq2  GATTTTCAGTGTTTTTCTCAACAAAAGGTTATTGCCTTAATGTTACA-GT  49

seq1  TAAATATGAATAACTCCACAATGTGTGAATATATCAAAATACCATGTTGT  98
      | ||| |||  |||||||| ||||| |||| |||| || || |||||  |
seq2  TTAAT-TGA--AACTCCAC-ATGTG-GAAT-TATCCAATTA-CATGT--T  90

seq1  GGGGCTGGAGAAGTGATGGCTCAACAGCTAAGAGAAACCACCCCTATTGC  148
       || || |||| || || ||||||||||| |||| ||||| |||||||||
seq2  TGGACT-GAGAGGT-AT-GCTCAACAGCT-AGAG-AACCA-CCCTATTGC  134

seq1  ACAGAACCTGAGCTCAGCTCCCAGCACCCACTTCGGGTGGCTCACAACCA  198
      |||||| ||||||||||||||||||| ||||||| |||||||||||||||
seq2  ACAGAA-CTGAGCTCAGCTCCCAGCA-CCACTTC-GGTGGCTCACAACCA  181

seq1  CCTGTAGCTGCAGCTCCAGGAACTCTGAATCCCTCTTTTCTGGACTCTGA  248
      |||||||||||||||||| ||||||||||||||||||||   ||||||||
seq2  CCTGTAGCTGCAGCTCCA-GAACTCTGAATCCCTCTTTTTCTGACTCTGA  230

seq1  AGGTACCTGGATATATCCATATACAGATACATGTATACATAATTAAAAAT  298
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  A-GTACCTGGATATATCCATATACAGATACATGTATACAT-ATTAAAAAT  278

seq1  AAATATAAAACAAATCTTAAAGAAAATTTAATTTAAAAAAATGTGTACAT  348
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATAT-AAACAAATCTTAAAGAAAATTTAATTAAAAAAAATGTGTACAT  327

seq1  TATAAATACAATTTTGCATGTAAGTTAAGAATAAAGAAAAAAATCAAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACAATTTTGCATGTAAGTTAAGAATAAAGAAAAAAATCAAGAT  377

seq1  CAAATTTCTATAAAAACGTTCTCAAATATTACGAAGTCAGACTGCAGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTATAAAAACGTTCTCAAATATTACGAAGTCAGACTGCAGTCA  427

seq1  GAAGATGCTCAAACTGTTCGTTCCTTCCAAAAATAATTAAAGTATGCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTCAAACTGTTCGTTCCTTCCAAAAATAATTAAAGTATGCTGT  477

seq1  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  527

seq1  TAGGGAGAAAAGGGTTTATTCAGCTTACAATTCCATACTGCTCTTCATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAAAAGGGTTTATTCAGCTTACAATTCCATACTGCTCTTCATCA  577

seq1  CCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGA  627

seq1  TGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTCAGCCTGCTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTCAGCCTGCTCTC  677

seq1  TTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGC  727

seq1  CTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCAT  777

seq1  GGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGT  827

seq1  GTCAAGTTGACACAAAACCAGCCAGTACACATGCAAAGTCTGCTCGTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTGACACAAAACCAGCCAGTACACATGCAAAGTCTGCTCGTTAC  877

seq1  TGGATGTGTATCTGAGGAATGATATAGGAGTTCCAAAGAGGCAGGCTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTATCTGAGGAATGATATAGGAGTTCCAAAGAGGCAGGCTTTC  927

seq1  CCACTAGAGCTATCCTTAGCCTTTTAAATTGAGATTTGTAGAAATATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAGCTATCCTTAGCCTTTTAAATTGAGATTTGTAGAAATATTTA  977

seq1  GTTACGTGATAACAAGAGAAATAGTAACCCTTTCTTCTGTGTCCCATACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGTGATAACAAGAGAAATAGTAACCCTTTCTTCTGTGTCCCATACT  1027

seq1  CCCCTCTTGTGATAACATGGCTCTTTTACAACCCCTCACAACGTAAAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTGTGATAACATGGCTCTTTTACAACCCCTCACAACGTAAAAAA  1077

seq1  CAAAACAAAGCAAATCACTAGGAACACAGAATGGAACTAATTTGTAAGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAGCAAATCACTAGGAACACAGAATGGAACTAATTTGTAAGCA  1127

seq1  CTTGGCTCCAGCTGAGCCATTTTAACTGAAATTGTTATTTACCATAAATG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCAGCTGAGCCATTTTAACTGAAATTGTTATTTACCATAAATG  1177

seq1  TATCATGGCCTTTGGAATTC  1218
      ||||||||||||||||||||
seq2  TATCATGGCCTTTGGAATTC  1197

seq1: chr9_79449566_79450621
seq2: B6Ng01-142L21.g_68_1081

seq1  GAATTCTTTCACTTGTCTGCATTTTGTTTGCTATTATATGTAGATTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTTGTCTGCATTTTGTTTGCTATTATATGTAGATTGGAT  50

seq1  TGCAGAAATAATTTTCATATATATTTTCAGCATTCTATAACACTATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATAATTTTCATATATATTTTCAGCATTCTATAACACTATTTCA  100

seq1  TTTTTTTAGTCTCTCTGTTCCTTTAGGTAAAAATAATAAATAAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGTCTCTCTGTTCCTTTAGGTAAAAATAATAAATAAAAAGAAA  150

seq1  GGAAAGAAAAAAAAAAAAGAAACCTAATGAATTGGTAGCATTCATTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAAAAAAAAAAGAAACCTAATGAATTGGTAGCATTCATTTAAC  200

seq1  TCCCCAAAGAGTTGTAGAGAAGTTAATGGTGTGGTTTGGCAAATCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAGAGTTGTAGAGAAGTTAATGGTGTGGTTTGGCAAATCCAGAA  250

seq1  ATACAGGAGGGGAAAATGGTCACTTAAATCCTAATTATGGAAAGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGGGGAAAATGGTCACTTAAATCCTAATTATGGAAAGTGTTTT  300

seq1  GTGCTTTAGAAGACTGTCGCATACTCAAAATACAGAACCGAAAATGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGAAGACTGTCGCATACTCAAAATACAGAACCGAAAATGTTGG  350

seq1  CATCTCCACGAGATCCCTATCTCGACCTGCCTTCAATCCTAGGGCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCACGAGATCCCTATCTCGACCTGCCTTCAATCCTAGGGCTCTTT  400

seq1  ATTTCTGGGAAACTGGAGTCCTTATGATGGCAGCAACATACCTGGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGAAACTGGAGTCCTTATGATGGCAGCAACATACCTGGATAGC  450

seq1  CTTGCCCATTGTACGGGATGCTGGCACACTGGGATGAATCACAATATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCATTGTACGGGATGCTGGCACACTGGGATGAATCACAATATCCA  500

seq1  GGAGGACCTGGAGGGCCTCGGATACCTGAGTTTCCTGGACGACCAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCTGGAGGGCCTCGGATACCTGAGTTTCCTGGACGACCAGGGGG  550

seq1  ACCAGGAGGGCCTCTTGAACCTGTAGACCCTGGTGGACCCGTTCGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGGGCCTCTTGAACCTGTAGACCCTGGTGGACCCGTTCGGGATT  600

seq1  CGCCTTGTGGACCTAGTGTGAAGCAAAATAATAATAATAATAATAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGTGGACCTAGTGTGAAGCAAAATAATAATAATAATAATAATAAT  650

seq1  AATAATAATATATTTCCATTTCTTGTCAAAAACACCTGAGGCAGATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATATATTTCCATTTCTTGTCAAAAACACCTGAGGCAGATTCCA  700

seq1  ATACTCATGGGTAAAGTGGTGCTTCATATGATTGACATAAATGTAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGGGTAAAGTGGTGCTTCATATGATTGACATAAATGTAAAGAT  750

seq1  TTCGCCACAGGGCTTGCATTAAGTGTAAAGATACAGAAACTTCAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCACAGGGCTTGCATTAAGTGTAAAGATACAGAAACTTCAGAAAAA  800

seq1  GAAGAAAAACATGGAGCAGCAAGATGGCTTGGAAAGTAAAGGTGCTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAACATGGAGCAGCAAGATGGCTTGGAAAGTAAAGGTGCTTGCT  850

seq1  GCCAAGCCTGACAATCAGAGTTAAGTTCCCAGGACCCACAAAGTGGAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCAAGCCTGACAATCAGAGTTAAGTTCCCAGGACCCACAAAGT-GAAGA  899

seq1  AAAGAACCAACTCCCACAAATTGTTCTCTGACCTCAACATGCACACCATG  950
      |||| |||||||||||||||||| ||||||| ||| ||||||||| ||||
seq2  AAAG-ACCAACTCCCACAAATTG-TCTCTGA-CTC-ACATGCACA-CATG  944

seq1  GACATGTGTACCACACATACACACACACATGCACAC--ACAGA-CAAGAT  997
      |||||||||||||||||||||||||||||||| | |  |||||  | |||
seq2  GACATGTGTACCACACATACACACACACATGCCCCCCGACAGATGATGAT  994

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  1047
       ||| ||| ||| ||||||| |||                          
seq2  -GAT-GAT-GATGGATAGAT-GAT--------------------------  1014

seq1  ATAGATGAT  1056
               
seq2  ---------  1014