BAC Information

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BAC

Clone NameB6Ng01-142N06
Chromosome9 (Build37)
Map Location 88,852,258 - 88,962,346
singlet/doubletdoublet
Overlap geneBcl2a1a, LOC100039689
Upstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741
Downstream geneEG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N06.bB6Ng01-142N06.g
ACCDH940926DH940927
length1,1471,120
definitionDH940926|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N06, 5' end.DH940927|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,852,258 - 88,853,419)(88,961,202 - 88,962,346)
sequence
gaattcataatgaataacacaggagaatggatacggcagaatggaggttg
ggtatgtgtgatgactatatatattttttttctagtgaagaataggaatg
aagagtttccttactaattaaaacaaacaagaaagtaacaatcaaaggac
ttcagtctgtttgtatgccttatttttagatactctgagttaaaattaaa
caaaacaaaaatcccctgggtcatttccaatggcctatacttgaaatgtt
ttttaaggctttttaaaataagatttatacatttattttatgtatgtgat
tatactgtttttcttaatcttctacatttactattattttctccagtctc
ctttaccagtttgaagtgcatggttgaaatcataatgcctggtagaagat
taatatgattttccccctatcatcagcatttcagaggaaaagatagttcc
taaagctactgggatacattttagtagctgggtgtctgtagtctcagcta
ctcaaaggcaaagactagaggaacactgcttgagcacagggtaatttcaa
gaccaagtgtgggcaagacctatcacaaaaactaagaatgcaccgaagat
gaaactcagtgtctcaccctttggaaaccatgctttagtttgattcaagt
gactttcctacttccatactctttaatgaaacactttttctgtgtctttt
atggaataaagaagagttcttgttcattagctccacaggggtgagggact
atacctttatacacaacgctgtatcattcatgctcagcatcggccccatt
gtacagaaagtaccttgcacatagctattgctttcaggaactgacataga
aatctgaggcttgaactctgaattttcctacttattagaggcataaccta
aagtaaattacctggaagtactccaagattcagacttcctatgtaatgtg
tatacataatatagcatgatgtataatatagtataaacacataaatgaga
cataatacctgtactaaaaactagaatactttctcctcacagtagttgtg
actatgtaaatagaattgtgtaagtatggggaacacatgggagtcccaga
agtgaaatataattttaaactaccctagtacgaacagaattcccttt
gaattctgtcggaagctttgggctccccttcatctaatgaaaagaaacac
attttaagcatcacacaccacttcctattgctctaatacttcaattagaa
aactaagctgtatctcccttacctttttatctttttgcaactgcttcgag
gatgttaagaatgatgagccatggtccctgtgaaaggattcatgtgcata
taatcggatgtcacctaggtgtcacccgaaccttccaaacagcacaaaaa
gccttgcatatttttctgcaaaccctgctgtgtaagaacccacccaaact
gggactaaggaaccagaacgcaagtgaccttcagccaggctgcccagacc
caatctccccgggaagggacctaagctccaatcccgaaatctcttttgct
gctgcgcacttctcccaggtagtttacacccgtaccctaagctcaagtcc
cgagggctgctccgcagaaccggagcatctgtatttattctgcaacccca
cattttgcttggtcactgggcggcctaaaagagtaacctacagctttccc
cgcaggtccctttatagtttcagtggagcgagagcaaggctgcccctccc
tctggcaccgattggacgcgagagcacgtgggggcgtggccgttcctgaa
acaaggcgtggaaacgctgtgggtcttttcttccaggctgttccggcttg
ctgggcgccgcccgcctgcccgcctgccgccgtgtgtctccgttgctgcg
cgcgctcccgctggctctccaccaccggtctcttcccagtctggcaggcg
gcttagctctacgtggagtgggagtggcgccaaaattcaaatgaactgcc
gcagttgcaggcatggcatcgcctgcttcgagaagttggcagccaggagt
ggccttgacctcaccccaactctacccgtggcagccgcgctggggaggca
gactacgcagtgaaacgaaagcacgcattatcctcatgcactctgggatg
ctgctgtcttcagaggccacactgtcgtgctgatttccaaacgcctgctt
ggtgcccagcaggttcaacctcacccaagtccaccctccaatatcagact
taagacagtttatctgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88852258_88853419
seq2: B6Ng01-142N06.b_48_1194

seq1  GAATTCATAATGAATAACACAGGAGAATGGATACGGCAGAATGGAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGAATAACACAGGAGAATGGATACGGCAGAATGGAGGTTG  50

seq1  GGTATGTGTGATGACTATATATATTTTTTTTCTAGTGAAGAATAGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGTGATGACTATATATATTTTTTTTCTAGTGAAGAATAGGAATG  100

seq1  AAGAGTTTCCTTACTAATTAAAACAAACAAGAAAGTAACAATCAAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCCTTACTAATTAAAACAAACAAGAAAGTAACAATCAAAGGAC  150

seq1  TTCAGTCTGTTTGTATGCCTTATTTTTAGATACTCTGAGTTAAAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGTTTGTATGCCTTATTTTTAGATACTCTGAGTTAAAATTAAA  200

seq1  CAAAACAAAAATCCCCTGGGTCATTTCCAATGGCCTATACTTGAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAATCCCCTGGGTCATTTCCAATGGCCTATACTTGAAATGTT  250

seq1  TTTTAAGGCTTTTTAAAATAAGATTTATACATTTATTTTATGTATGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCTTTTTAAAATAAGATTTATACATTTATTTTATGTATGTGAT  300

seq1  TATACTGTTTTTCTTAATCTTCTACATTTACTATTATTTTCTCCAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTTTTTCTTAATCTTCTACATTTACTATTATTTTCTCCAGTCTC  350

seq1  CTTTACCAGTTTGAAGTGCATGGTTGAAATCATAATGCCTGGTAGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAGTTTGAAGTGCATGGTTGAAATCATAATGCCTGGTAGAAGAT  400

seq1  TAATATGATTTTCCCCCTATCATCAGCATTTCAGAGGAAAAGATAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGATTTTCCCCCTATCATCAGCATTTCAGAGGAAAAGATAGTTCC  450

seq1  TAAAGCTACTGGGATACATTTTAGTAGCTGGGTGTCTGTAGTCTCAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACTGGGATACATTTTAGTAGCTGGGTGTCTGTAGTCTCAGCTA  500

seq1  CTCAAAGGCAAAGACTAGAGGAACACTGCTTGAGCACAGGGTAATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGCAAAGACTAGAGGAACACTGCTTGAGCACAGGGTAATTTCAA  550

seq1  GACCAAGTGTGGGCAAGACCTATCACAAAAACTAAGAATGCACCGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTGTGGGCAAGACCTATCACAAAAACTAAGAATGCACCGAAGAT  600

seq1  GAAACTCAGTGTCTCACCCTTTGGAAACCATGCTTTAGTTTGATTCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTGTCTCACCCTTTGGAAACCATGCTTTAGTTTGATTCAAGT  650

seq1  GACTTTCCTACTTCCATACTCTTTAATGAAACACTTTTTCTGTGTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCTACTTCCATACTCTTTAATGAAACACTTTTTCTGTGTCTTTT  700

seq1  ATGGAATAAAGAAGAGTTCTTGTTCATTAGCTCCACAGGGGTGAGGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAAGAAGAGTTCTTGTTCATTAGCTCCACAGGGGTGAGGGACT  750

seq1  ATACCTTTATACACAACGCTGTATCATTCATGCTCAGCATCGGCCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTATACACAACGCTGTATCATTCATGCTCAGCATCGGCCCCATT  800

seq1  GTACAGAAAGTACCTTGCACATAGCTATTGCTTTCAGGAACTGACATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAAGTACCTTGCACATAGCTATTGCTTTCAGGAACTGACATAGA  850

seq1  AATCTGAGGCTTGAACTCTGAATTTTCCTACTTATTAGAGGCATAACCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGGCTTGAACTCTGAATTTTCCTACTTATTAGAGGCATAACCTA  900

seq1  AGGTAAATTACCTAGGAAGTACTCCAAGATTCAGACTTCCTATGTAATGT  950
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTACCT-GGAAGTACTCCAAGATTCAGACTTCCTATGTAATGT  949

seq1  GTATAACATAATATAGCATGATGTAATAATATAGTATAAACACAATAAAA  1000
      |||| ||||||||||||||||||| |||||||||||||||||||   |||
seq2  GTAT-ACATAATATAGCATGATGT-ATAATATAGTATAAACACA--TAAA  995

seq1  TGAAGACAATAATACCTGTACTAAAAAACTAGAATACTTTCTCATCACAG  1050
      || |||| |||||||||||||| |||||||||||||||||||| ||||||
seq2  TG-AGAC-ATAATACCTGTACT-AAAAACTAGAATACTTTCTCCTCACAG  1042

seq1  TAGTTTGTGACTATGTAAATAGAATTGTGTAAGTATGGGGACCACATGGG  1100
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAG-TTGTGACTATGTAAATAGAATTGTGTAAGTATGGGGAACACATGGG  1091

seq1  AAGTCCCAAGAAGTTGAAATATAATTTTTAAAACTACCCTAGGTACGAAC  1150
       |||||| ||||| ||||||||||||||  ||||||||||| ||||||||
seq2  -AGTCCC-AGAAG-TGAAATATAATTTT--AAACTACCCTA-GTACGAAC  1135

seq1  AGAAATCCCTTT  1162
      |||| |||||||
seq2  AGAATTCCCTTT  1147

seq1: chr9_88961202_88962346
seq2: B6Ng01-142N06.g_67_1186 (reverse)

seq1  TTGACAGTATAACTGTCCCTAAAGTCTGATAGTGAGAGGGGTGGGACTGG  50
      |||||||   ||||||  || |||||||||| || |||||   ||||| |
seq2  TTGACAGATAAACTGT--CTTAAGTCTGATATTG-GAGGG--TGGACTTG  45

seq1  GGTGGAGGTTGGACCTGGCTGGGCACCCAAGCAGGCG-TTGGATATCAAG  99
      ||| ||||||| |||| |||||||| ||||||||||| ||||| ||| ||
seq2  GGT-GAGGTTGAACCT-GCTGGGCA-CCAAGCAGGCGTTTGGAAATC-AG  91

seq1  CACCGGACAGTGTGGCCCTCTGAAGACCAGCAGCATCCCCAGAGTGCATG  149
      |||  |||||||||| |||||||||| ||||||||| |||||||||||||
seq2  CAC--GACAGTGTGG-CCTCTGAAGA-CAGCAGCAT-CCCAGAGTGCATG  136

seq1  AAGGATAAATGCGTGGCTTTTCCGTTTCACCTGCGTAGTTCTGCCCTTCC  199
       ||||| ||||||| |||||  ||||||| |||||||| ||||||  |||
seq2  -AGGAT-AATGCGT-GCTTT--CGTTTCA-CTGCGTAG-TCTGCC--TCC  177

seq1  CCAGCGCGGCTGCCACCGGGTTAGAGTTGGGGTGAGGTCAAGGCCACTCC  249
      ||||||||||||||||  || |||||||||||||||||||||||||||||
seq2  CCAGCGCGGCTGCCAC--GGGTAGAGTTGGGGTGAGGTCAAGGCCACTCC  225

seq1  TGGCTGCCAACCTTCTCGAAGCAGGCGATGCCATGCCTGCAACTGCGGCA  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCAA-CTTCTCGAAGCAGGCGATGCCATGCCTGCAACTGCGGCA  274

seq1  GTTCATTTGAATTTTGGCGCCACTCCCACTCCACGTAGAGCTAAGCCGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTGAATTTTGGCGCCACTCCCACTCCACGTAGAGCTAAGCCGCC  324

seq1  TGCCAGACTGGGAAGAGACCGGTGGTGGAGAGCCAGCGGGAGCGCGCGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACTGGGAAGAGACCGGTGGTGGAGAGCCAGCGGGAGCGCGCGCA  374

seq1  GCAACGGAGACACACGGCGGCAGGCGGGCAGGCGGGCGGCGCCCAGCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGAGACACACGGCGGCAGGCGGGCAGGCGGGCGGCGCCCAGCAAG  424

seq1  CCGGAACAGCCTGGAAGAAAAGACCCACAGCGTTTCCACGCCTTGTTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAACAGCCTGGAAGAAAAGACCCACAGCGTTTCCACGCCTTGTTTCA  474

seq1  GGAACGGCCACGCCCCCACGTGCTCTCGCGTCCAATCGGTGCCAGAGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGGCCACGCCCCCACGTGCTCTCGCGTCCAATCGGTGCCAGAGGGA  524

seq1  GGGGCAGCCTTGCTCTCGCTCCACTGAAACTATAAAGGGACCTGCGGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCCTTGCTCTCGCTCCACTGAAACTATAAAGGGACCTGCGGGGA  574

seq1  AAGCTGTAGGTTACTCTTTTAGGCCGCCCAGTGACCAAGCAAAATGTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAGGTTACTCTTTTAGGCCGCCCAGTGACCAAGCAAAATGTGGG  624

seq1  GTTGCAGAATAAATACAGATGCTCCGGTTCTGCGGAGCAGCCCTCGGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAATAAATACAGATGCTCCGGTTCTGCGGAGCAGCCCTCGGGAC  674

seq1  TTGAGCTTAGGGTACGGGTGTAAACTACCTGGGAGAAGTGCGCAGCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTAGGGTACGGGTGTAAACTACCTGGGAGAAGTGCGCAGCAGCA  724

seq1  AAAGAGATTTCGGGATTGGAGCTTAGGTCCCTTCCCGGGGAGATTGGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATTTCGGGATTGGAGCTTAGGTCCCTTCCCGGGGAGATTGGGTC  774

seq1  TGGGCAGCCTGGCTGAAGGTCACTTGCGTTCTGGTTCCTTAGTCCCAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCCTGGCTGAAGGTCACTTGCGTTCTGGTTCCTTAGTCCCAGTT  824

seq1  TGGGTGGGTTCTTACACAGCAGGGTTTGCAGAAAAATATGCAAGGCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTTCTTACACAGCAGGGTTTGCAGAAAAATATGCAAGGCTTTT  874

seq1  TGTGCTGTTTGGAAGGTTCGGGTGACACCTAGGTGACATCCGATTATATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTGGAAGGTTCGGGTGACACCTAGGTGACATCCGATTATATG  924

seq1  CACATGAATCCTTTCACAGGGACCATGGCTCATCATTCTTAACATCCTCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAATCCTTTCACAGGGACCATGGCTCATCATTCTTAACATCCTCG  974

seq1  AAGCAGTTGCAAAAAGATAAAAAGGTAAGGGAGATACAGCTTAGTTTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTGCAAAAAGATAAAAAGGTAAGGGAGATACAGCTTAGTTTTCT  1024

seq1  AATTGAAGTATTAGAGCAATAGGAAGTGGTGTGTGATGCTTAAAATGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTATTAGAGCAATAGGAAGTGGTGTGTGATGCTTAAAATGTGT  1074

seq1  TTCTTTTCATTAGATGAAGGGGAGCCCAAAGCTTCCGACAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATTAGATGAAGGGGAGCCCAAAGCTTCCGACAGAATTC  1120