BAC Information

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BAC

Clone NameB6Ng01-142O16
Chromosome9 (Build37)
Map Location 58,213,043 - 58,403,380
singlet/doubletdoublet
Overlap geneTbc1d21, 6030419C18Rik, Cd276
Upstream genePpcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1
Downstream geneNptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O16.bB6Ng01-142O16.g
ACCDH940992DH940993
length1,052180
definitionDH940992|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O16, 5' end.DH940993|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,402,323 - 58,403,380)(58,213,043 - 58,213,213)
sequence
gaattcttcgctgtcgagttaaccctttccgagccgcggtgctggcctgg
tgtcgaggggagaaattctggactgaatggggacagctggattgcagcgg
ggcttggagccagcagttccgagggtgggagtggtcagtggccggtcacc
tgtcccctctcaccgaaaaagaaacttcggctcttggaagtgctaggatc
cgtgtgggggatgggcagcgagtagcccaacacctcctcctcctcctcag
agtactgggtcttcccccgtcggggtccaacaagggtctgggtcggggcg
ggtccagaccccgggccctgcccagcaggcgggctcaggcttcaccctcg
gatctcgccgcagggccaatccagcctctggggcgcacccgggcggcttt
tccgggcccccagcttcctctggccgtcccgcccctcactctcgcccccg
gccccagtctggccgggcctcgcggcggcggcggcaccaacagtggcggc
gattgggctgcgccccgccgcgtccccgagtcccgggagtcggcgcggcg
cggtgagtgcttgcgtggcgcggggcggcgtgggctgctgggtccacctt
tgtgtgcggcggcgcctggactgcacgcgctaaggcgccgggtgcaagga
gctgggaactccgcggcccttacccgcagggcaccggcaccctgatccac
gatgaccgctggggctctagggtccggagtagctgagagcacccctgctt
ggccgctccctcctcggggggctgagacccgctgggatttgtgggatctg
atgactcccaagtctggggcttgtggggcccgaaacgggtgggtgactga
ttattcaggccctgggtgtggagtagggatgcagcaggtaggtccactgg
ggtgatggttcctggagcttaaggaagctgctagctcaagactggaggga
gcattcttcggactttgagagaaacaccatgattgccagctctgaacggt
aaactgcggggaggggagctcgaagttaggtgggcccctgtttcttggat
ct
tttcccaaacaagactgtgtgctactcacctatgaagatcctccaggcaa
tcagagcacactagaggaagcgccctgcttgatcctggccttgaagcaag
gatggagtttttgcatttatttattcagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58402323_58403380
seq2: B6Ng01-142O16.b_46_1097 (reverse)

seq1  AGATCCAAG-AACAGGGGACCACCTAACCTCGTGCTCCCCTCCCCCGCAG  49
      ||||||||| |||||||| ||||||||| ||| |||||||| ||||||||
seq2  AGATCCAAGAAACAGGGGCCCACCTAACTTCGAGCTCCCCT-CCCCGCAG  49

seq1  TTTCCCCTTTCAGAGCTGGCATTCATGGTGTTTTCTTCCTCAAAGTCCGG  99
      |||  || ||||||||||||| |||||||| |||||  ||||||||||| 
seq2  TTT-ACCGTTCAGAGCTGGCAATCATGGTG-TTTCT--CTCAAAGTCCGA  95

seq1  AGAATGCCTCCCTTCCAGTCTTG-GCTAGCAGCTTCCTTAAGCTTCAAGA  148
      |||||| ||||| |||||||||| |||||||||||||||||||| || ||
seq2  AGAATG-CTCCC-TCCAGTCTTGAGCTAGCAGCTTCCTTAAGCTCCAGGA  143

seq1  ACCATCAACCCAGT-GACCTACCTGCCTGCATCCCTACTCCACACCCAGG  197
      ||||||| |||||| |||||||||| ||||||||||||||||||||||||
seq2  ACCATCACCCCAGTGGACCTACCTG-CTGCATCCCTACTCCACACCCAGG  192

seq1  GCCTGAATAATCAGTCACCCACCCCGTTTCGGGCCCCACAAGCCCCAGAC  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCTGAATAATCAGTCACCCA-CCCGTTTCGGGCCCCACAAGCCCCAGAC  241

seq1  TTGGGAGTCATCAGATCCCACAAATCCCAGCGGGTCTCAGCCCCCCGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTCATCAGATCCCACAAATCCCAGCGGGTCTCAGCCCCCCGAGG  291

seq1  AGGGAGCGGCCAAGCAGGGGTGCTCTCAGCTACTCCGGACCCTAGAGCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCGGCCAAGCAGGGGTGCTCTCAGCTACTCCGGACCCTAGAGCCC  341

seq1  CAGCGGTCATCGTGGATCAGGGTGCCGGTGCCCTGCGGGTAAGGGCCGCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTCATCGTGGATCAGGGTGCCGGTGCCCTGCGGGTAAGGGCCGCG  391

seq1  GAGTTCCCAGCTCCTTGCACCCGGCGCCTTAGCGCGTGCAGTCCAGGCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCAGCTCCTTGCACCCGGCGCCTTAGCGCGTGCAGTCCAGGCGC  441

seq1  CGCCGCACACAAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCACACAAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCA  491

seq1  AGCACTCACCGCGCCGCGCCGACTCCCGGGACTCGGGGACGCGGCGGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACCGCGCCGCGCCGACTCCCGGGACTCGGGGACGCGGCGGGGC  541

seq1  GCAGCCCAATCGCCGCCACTGTTGGTGCCGCCGCCGCCGCGAGGCCCGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCAATCGCCGCCACTGTTGGTGCCGCCGCCGCCGCGAGGCCCGGC  591

seq1  CAGACTGGGGCCGGGGGCGAGAGTGAGGGGCGGGACGGCCAGAGGAAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGGCCGGGGGCGAGAGTGAGGGGCGGGACGGCCAGAGGAAGCT  641

seq1  GGGGGCCCGGAAAAGCCGCCCGGGTGCGCCCCAGAGGCTGGATTGGCCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCGGAAAAGCCGCCCGGGTGCGCCCCAGAGGCTGGATTGGCCCT  691

seq1  GCGGCGAGATCCGAGGGTGAAGCCTGAGCCCGCCTGCTGGGCAGGGCCCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGAGATCCGAGGGTGAAGCCTGAGCCCGCCTGCTGGGCAGGGCCCG  741

seq1  GGGTCTGGACCCGCCCCGACCCAGACCCTTGTTGGACCCCGACGGGGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGACCCGCCCCGACCCAGACCCTTGTTGGACCCCGACGGGGGAA  791

seq1  GACCCAGTACTCTGAGGAGGAGGAGGAGGTGTTGGGCTACTCGCTGCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTACTCTGAGGAGGAGGAGGAGGTGTTGGGCTACTCGCTGCCCA  841

seq1  TCCCCCACACGGATCCTAGCACTTCCAAGAGCCGAAGTTTCTTTTTCGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACACGGATCCTAGCACTTCCAAGAGCCGAAGTTTCTTTTTCGGT  891

seq1  GAGAGGGGACAGGTGACCGGCCACTGACCACTCCCACCCTCGGAACTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGACAGGTGACCGGCCACTGACCACTCCCACCCTCGGAACTGCT  941

seq1  GGCTCCAAGCCCCGCTGCAATCCAGCTGTCCCCATTCAGTCCAGAATTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAAGCCCCGCTGCAATCCAGCTGTCCCCATTCAGTCCAGAATTTC  991

seq1  TCCCCTCGACACCAGGCCAGCACCGCGGCTCGGAAAGGGTTAACTCGACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCGACACCAGGCCAGCACCGCGGCTCGGAAAGGGTTAACTCGACA  1041

seq1  GCGAAGAATTC  1058
      |||||||||||
seq2  GCGAAGAATTC  1052

seq1: chr9_58213043_58213213
seq2: B6Ng01-142O16.g_77_247

seq1  TTTCCCAAACAAGACTGTGTGCTACTCACCTATGAAGATCCTCCAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAACAAGACTGTGTGCTACTCACCTATGAAGATCCTCCAGGCAA  50

seq1  TCAGAGCACACTAGAGGAAGCGCCCTGCTTGATCCTGGCCTTGAAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCACACTAGAGGAAGCGCCCTGCTTGATCCTGGCCTTGAAGCAAG  100

seq1  GATGGAGTTTTTGCATTTATTTATTCAGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTTTTTGCATTTATTTATTCAGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGT  171
      |||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGT  171