BAC Information

Click to search

BAC

Clone NameB6Ng01-143K07
Chromosome9 (Build37)
Map Location 29,394,002 - 29,543,161
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143K07.bB6Ng01-143K07.g
ACCDH941525DH941526
length1,0241,055
definitionDH941525|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K07, 5' end.DH941526|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,542,129 - 29,543,161)(29,394,002 - 29,395,059)
sequence
gaattccactcccctctaatcttctctattctcctctctttccccttcct
tctccttctctctctcctttcttctccctcccagacattggaagtccaga
tccctgcttgttggtacacttcagtgcctccaccacagataagaacacaa
gaaaaatatgccagtgttttctgcaggtgtgcgcagctcaaacaagcatc
cagcaatttcctgaccaagaacagccatctcataattgtacccttcatta
ttagatttaaggggtgttcattcagaactcaaagggtccatttcccagtg
taaagaaaacgcccatagctattagaaaatcccaaagcaggataagctat
gaaccaggggccacaccaatgctagtggcctgggccccagtaatgagagc
cattttcttttaccttgctggctgtgagttggctctgctcttccagacac
ctcatgagaaggaacagaccctgattcacaacctgactgtgagaaaagat
gagagaggaaaccagcagaggtggacatagctcaatgcattactggaggc
ataactggagacctacatgacaattagtggttttttttttttttttcaga
attcctcgaggccttatttaaaagtagggcaactttctagagttctgcct
tctctgctggctatggtgccaggtgggaagattcgagcgcattcctcttc
cccagaatagaaaggtttggaaatgctcaatcgaacagattgattaataa
ttccttcaccacatgcttctctctctgttgcatttcggattctctctctg
ctctgtttagggttaactttgtctgaccaaaacaagattgtagcgtagag
ttcaagtataattggtttgcatttgtgcagagtcatgggtggccacgatt
tcgtcacatgtgacactcaggtccctggctggagagctagacactcaccc
cattggcagatggcagacagctgttatctctttttagtatatcactcggg
agtcagctctcttgcacatagcac
gaattcagcttgtagcaccttgctcgtacatgtacattatcatcggaact
tcttcaatccgatcactgggatcttctaagaaagatgtatcaggcaaagt
tagcgtcgccgtgtgaagcgccaagtgccagaagctgccttggcagccag
tatactggagaggcccatcattaatcacgatgacatgaggtaatctgttg
gctgtgtcttgtgaaggcatgcctgacattacaggataactaggagcttg
ccaggtagagaaacatagggaaggggttctatgcaaaagagacaggatgt
cgatggcaaggatatgagaagttgcagggggctttccaaaaaattcccat
ggtacttctcaaagttgcactgagaggcagaactggtgataagctgctgt
ttggtaggccagatgaaatagagccccctatctcctgattaaaatcctta
ctgttggaatagatggcttggtgggtgaaatgaattccagaggtcagatc
cccagggcccacatcaaagctgagcaggcatggtggccatcctgtaatcc
cagcagaggaagagacaaggagtccctggggtaagctggctatctattct
agcagaaattggaggtccctgggctcagtatgagaccctgctccaataaa
cattagtagagaaacaatttagaaagacacctgatgtcaacttcagcctt
cacatgaacacgcccacatactcacacaactgtgcacggaggcacaaggg
tgtctaccacagattcacattcacacgctcagtgtctcctcacccacaga
cactcaacaaaaggcttgtgattatgccacaggctgtgtagtttcataca
cttgttctatattgggaagcggcatgattagtttgccctgggaaggatgc
agagggtgatttggggttaaagaaggagacagagtggggccccagttcaa
agttctgcatttattaggaatcagaaatttcgtgtgatttcagtggcctg
agtagcaagagaaaatgactggggagaaagacttggggtgaggggtgaga
ggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29542129_29543161
seq2: B6Ng01-143K07.b_48_1071 (reverse)

seq1  GTGCTATGTGCAGAGGAGGCCTGGAACTCCCGAGTTGATATACTTAAAAA  50
      |||||||||||  | |||  |||  ||||||||| |||||||| ||||||
seq2  GTGCTATGTGC--AAGAGAGCTG--ACTCCCGAG-TGATATAC-TAAAAA  44

seq1  GAGATAACAGCTGTTCTGCCATCTGCCAATGGGGTGAGTGTTCTAGGCTC  100
      ||||||||||||| |||||||||||||||||||||||||| |||| ||||
seq2  GAGATAACAGCTG-TCTGCCATCTGCCAATGGGGTGAGTG-TCTA-GCTC  91

seq1  TCCAGCCAGGGACCTGAGTGTCACATGTGACGAAATCGTGGCCACCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGGGACCTGAGTGTCACATGTGACGAAATCGTGGCCACCCATG  141

seq1  ACTCTGCACAAATGCAAACCAATTATACTTGAACTCTACGCTACAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCACAAATGCAAACCAATTATACTTGAACTCTACGCTACAATCTT  191

seq1  GTTTTGGTCAGACAAAGTTAACCCTAAACAGAGCAGAGAGAGAATCCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTCAGACAAAGTTAACCCTAAACAGAGCAGAGAGAGAATCCGAA  241

seq1  ATGCAACAGAGAGAGAAGCATGTGGTGAAGGAATTATTAATCAATCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGAGAGAGAAGCATGTGGTGAAGGAATTATTAATCAATCTGTT  291

seq1  CGATTGAGCATTTCCAAACCTTTCTATTCTGGGGAAGAGGAATGCGCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGAGCATTTCCAAACCTTTCTATTCTGGGGAAGAGGAATGCGCTCG  341

seq1  AATCTTCCCACCTGGCACCATAGCCAGCAGAGAAGGCAGAACTCTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCACCTGGCACCATAGCCAGCAGAGAAGGCAGAACTCTAGAAA  391

seq1  GTTGCCCTACTTTTAAATAAGGCCTCGAGGAATTCTGAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTACTTTTAAATAAGGCCTCGAGGAATTCTGAAAAAAAAAAAAA  441

seq1  AAACCACTAATTGTCATGTAGGTCTCCAGTTATGCCTCCAGTAATGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTAATTGTCATGTAGGTCTCCAGTTATGCCTCCAGTAATGCATT  491

seq1  GAGCTATGTCCACCTCTGCTGGTTTCCTCTCTCATCTTTTCTCACAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGTCCACCTCTGCTGGTTTCCTCTCTCATCTTTTCTCACAGTCA  541

seq1  GGTTGTGAATCAGGGTCTGTTCCTTCTCATGAGGTGTCTGGAAGAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAATCAGGGTCTGTTCCTTCTCATGAGGTGTCTGGAAGAGCAGA  591

seq1  GCCAACTCACAGCCAGCAAGGTAAAAGAAAATGGCTCTCATTACTGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCACAGCCAGCAAGGTAAAAGAAAATGGCTCTCATTACTGGGGC  641

seq1  CCAGGCCACTAGCATTGGTGTGGCCCCTGGTTCATAGCTTATCCTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACTAGCATTGGTGTGGCCCCTGGTTCATAGCTTATCCTGCTTT  691

seq1  GGGATTTTCTAATAGCTATGGGCGTTTTCTTTACACTGGGAAATGGACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTCTAATAGCTATGGGCGTTTTCTTTACACTGGGAAATGGACCC  741

seq1  TTTGAGTTCTGAATGAACACCCCTTAAATCTAATAATGAAGGGTACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCTGAATGAACACCCCTTAAATCTAATAATGAAGGGTACAATT  791

seq1  ATGAGATGGCTGTTCTTGGTCAGGAAATTGCTGGATGCTTGTTTGAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGCTGTTCTTGGTCAGGAAATTGCTGGATGCTTGTTTGAGCTG  841

seq1  CGCACACCTGCAGAAAACACTGGCATATTTTTCTTGTGTTCTTATCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACCTGCAGAAAACACTGGCATATTTTTCTTGTGTTCTTATCTGTG  891

seq1  GTGGAGGCACTGAAGTGTACCAACAAGCAGGGATCTGGACTTCCAATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCACTGAAGTGTACCAACAAGCAGGGATCTGGACTTCCAATGTC  941

seq1  TGGGAGGGAGAAGAAAGGAGAGAGAGAAGGAGAAGGAAGGGGAAAGAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGAGAAGAAAGGAGAGAGAGAAGGAGAAGGAAGGGGAAAGAGAG  991

seq1  GAGAATAGAGAAGATTAGAGGGGAGTGGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  GAGAATAGAGAAGATTAGAGGGGAGTGGAATTC  1024

seq1: chr9_29394002_29395059
seq2: B6Ng01-143K07.g_67_1121

seq1  GAATTCAGCTTGTAGCACCTTGCTCGTACATGTACATTATCATCGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTGTAGCACCTTGCTCGTACATGTACATTATCATCGGAACT  50

seq1  TCTTCAATCCGATCACTGGGATCTTCTAAGAAAGATGTATCAGGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATCCGATCACTGGGATCTTCTAAGAAAGATGTATCAGGCAAAGT  100

seq1  TAGCGTCGCCGTGTGAAGCGCCAAGTGCCAGAAGCTGCCTTGGCAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTCGCCGTGTGAAGCGCCAAGTGCCAGAAGCTGCCTTGGCAGCCAG  150

seq1  TATACTGGAGAGGCCCATCATTAATCACGATGACATGAGGTAATCTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGAGAGGCCCATCATTAATCACGATGACATGAGGTAATCTGTTG  200

seq1  GCTGTGTCTTGTGAAGGCATGCCTGACATTACAGGATAACTAGGAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCTTGTGAAGGCATGCCTGACATTACAGGATAACTAGGAGCTTG  250

seq1  CCAGGTAGAGAAACATAGGGAAGGGGTTCTATGCAAAAGAGACAGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGAGAAACATAGGGAAGGGGTTCTATGCAAAAGAGACAGGATGT  300

seq1  CGATGGCAAGGATATGAGAAGTTGCAGGGGGCTTTCCAAAAAATTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGCAAGGATATGAGAAGTTGCAGGGGGCTTTCCAAAAAATTCCCAT  350

seq1  GGTACTTCTCAAAGTTGCACTGAGAGGCAGAACTGGTGATAAGCTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCTCAAAGTTGCACTGAGAGGCAGAACTGGTGATAAGCTGCTGT  400

seq1  TTGGTAGGCCAGATGAAATAGAGCCCCCTATCTCCTGATTAAAATCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGCCAGATGAAATAGAGCCCCCTATCTCCTGATTAAAATCCTTA  450

seq1  CTGTTGGAATAGATGGCTTGGTGGGTGAAATGAATTCCAGAGGTCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAATAGATGGCTTGGTGGGTGAAATGAATTCCAGAGGTCAGATC  500

seq1  CCCAGGGCCCACATCAAAGCTGAGCAGGCATGGTGGCCATCCTGTAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCCACATCAAAGCTGAGCAGGCATGGTGGCCATCCTGTAATCC  550

seq1  CAGCAGAGGAAGAGACAAGGAGTCCCTGGGGTAAGCTGGCTATCTATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGAAGAGACAAGGAGTCCCTGGGGTAAGCTGGCTATCTATTCT  600

seq1  AGCAGAAATTGGAGGTCCCTGGGCTCAGTATGAGACCCTGCTCCAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAATTGGAGGTCCCTGGGCTCAGTATGAGACCCTGCTCCAATAAA  650

seq1  CATTAGTAGAGAAACAATTTAGAAAGACACCTGATGTCAACTTCAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTAGAGAAACAATTTAGAAAGACACCTGATGTCAACTTCAGCCTT  700

seq1  CACATGAACACGCCCACATACTCACACAACTGTGCACGGAGGCACAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAACACGCCCACATACTCACACAACTGTGCACGGAGGCACAAGGG  750

seq1  TGTCTACCACAGATTCACATTCACACGCTCAGTGTCTCCTCACCCACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCACAGATTCACATTCACACGCTCAGTGTCTCCTCACCCACAGA  800

seq1  CACTCAACAAAAGGCTTGTGATTATGCCACAGGCTGTGTAGTTTCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACAAAAGGCTTGTGATTATGCCACAGGCTGTGTAGTTTCATACA  850

seq1  CTTGTTCTATATTGGGAAGCGGCATGATTAGTTTGCCCTGGGAAGGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTATATTGGGAAGCGGCATGATTAGTTTGCCCTGGGAAGGATGC  900

seq1  AGAGGGTGATTTGGGGTTAAAGAAGGAGACAGAGGTGGGGCCCCAGTTCA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGGGTGATTTGGGGTTAAAGAAGGAGACAGA-GTGGGGCCCCAGTTCA  949

seq1  AAGTTCTGCATTTATTAGGGAATCAGGAAAATTTCGTGGTGATGTCAGTG  1000
      ||||||||||||||||| ||||||||  ||||||||| ||||| ||||||
seq2  AAGTTCTGCATTTATTA-GGAATCAG--AAATTTCGT-GTGATTTCAGTG  995

seq1  GCCTGAGTAGCAAAGAGAAAATGACT-GGGAGGAAGACTGGGGGT-AGGG  1048
      ||||||||||| |||||||||||||| ||||| |||||| ||||| ||||
seq2  GCCTGAGTAGC-AAGAGAAAATGACTGGGGAGAAAGACTTGGGGTGAGGG  1044

seq1  GTGAG-GGTGG  1058
      ||||| |||||
seq2  GTGAGAGGTGG  1055