BAC Information

Click to search

BAC

Clone NameB6Ng01-144A18
Chromosome9 (Build37)10 (Build37)
Map Location 88,461,284 - 88,461,397109,909,307 - 109,910,323
singlet/doubletsingletsinglet
Overlap gene4930422I07Rik
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik
Downstream geneEG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A18.bB6Ng01-144A18.g
ACCDH941826DH941827
length1,0001,033
definitionDH941826|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A18, 5' end.DH941827|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,461,284 - 88,461,397)(109,909,307 - 109,910,323)
sequence
gaattcaactatttagttgaaaattttttgcatctttgttcatcagagaa
gttggttggtagtttcctttgttgctgtgtctttacttggttttgatgtg
agaataactctctgccggagatgagtttagaagtgttcctttgtattccg
tgttgtgaaacaagttaagaagagttggtatgggatcttccttgaaagtc
tgacagaattcagcagtgaggccaggaagttggggcacacagctttaact
cagcacttgggaggcagaggcaggcagatctctatgagttcaaggccagc
caagtctcctgagcaagttccaagcctgagatacacagagaaaccctgtc
tcaaacaaacaaacaaacaaacaaacaaacaaacggcagtgaataagtct
gtcctgggcttttatgagacacacttttgattacagctttgatcacattg
tttgtattgagcctctctgacttatgtctatcttctggacttaattttgg
taaattacataagtttagaaattcttttatttcttctgagttatccaact
ttttagagttcaagtttttataataatttctaataatgttgcatgttgca
ttggagtctgttgtcagaacagcttttgatctttaattttgttaatttgt
gttttatccctctttctttttatcaggtagcattgttgaagggtttgtca
atcttataaactattcagaaaaccccactgttttattagtttctttaccc
atcttttatttaatattaataacctatgatttttagctatctgctgtgtt
tggggttgggcatttcttctctagacccttgaggtacatcataaagttgt
tcactggatatctatacggttttcggtttttactatgcacacttaccact
gtaagtttcctcctaggattgccttggctttatccccaaggttccgatag
gattgcatttcattatcagtgtctctagtaattggaaatttcctccctga

gaattctttggtgtgtgtgtggggggggtggtcaattgacactcctcccc
taatttactgcacatgaaaaggcttaccaacccaagaaaagaccttcccc
ataaatggcttaatcagggtttctattcctacacataacatcctgaccaa
caaaccaattggggagtaaggtgtttattcagcttatacttccacattgc
tattcatcaccaaaggaagttaggactggaactcaaacaggtcaggaagc
gggagctgatacaaaggccatgaagggatgtaagttacttaatggcttgc
ttcccctggcttgctcaacttgctttcttatagaacccaagactaccagc
ccagggatcgcaccacccacaatgggccctcccacccttgatcactaatt
gagaaaatgccttacagttggatctcatggaggcatttccttaagggagg
ttcctctctctgtgataactccagcttgtgtcaagttgacacacaaaacc
tctcctcggtcttctctggactctctgtattacatcctctcacttgtatc
tctaagagaaaaccgtggtagataattcctttgtggtaccagggcaaatc
ttgggacctctgttggagaagtaaattctaagtaagccacgtcccgctgc
atacaagttaagaaaatagaaaactgtcctctgccacatatctagcacca
gggtcctagaaacctgagagaacacacatacgaacagaaaggctagcatc
aagtgagtcatgtgctctgatagagatgtgctggtggcagtccagaaact
cagcacacttattgtgtatatctgaagtgagcagggggttgaactcatat
catgggagggctctgacaggagcaatctccctgtaatccacgggagagaa
actagggtgatacttctgtaaacactgtcaaacacacgcatggtaaggct
ttgcatcccattgggtctgaggcattggattcttgaaatgctgtgtcaat
caacgaaccaatgcattaggacttctgctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88461284_88461397
seq2: B6Ng01-144A18.b_285_397 (reverse)

seq1  TTTGAGACAGGGTTTCTCTGTAGTTCCCACTGTCCTGGAACTCACTCTGT  50
      |||||||||||||||||||||   || ||  | | |||||||  ||| | 
seq2  TTTGAGACAGGGTTTCTCTGTGTATCTCA--GGCTTGGAACTTGCTCAGG  48

seq1  AGACCAGGCTGGCCTCGAACTC--AGAAATTTGCCTGCCTCTGCCTCCCT  98
      ||||  ||||||||| ||||||  ||| || |||||||||||||||||| 
seq2  AGACTTGGCTGGCCTTGAACTCATAGAGATCTGCCTGCCTCTGCCTCCCA  98

seq1  AGTGCTGGGATTAAAG  114
      ||||||| | ||||||
seq2  AGTGCTGAG-TTAAAG  113

seq1: chr10_109909307_109910323
seq2: B6Ng01-144A18.g_104_1100

seq1  TGACACTCCTCCCCTAATTAGCTGCACATGAAAAGGCTTACCAACCCAAG  50
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TGACACTCCTCCCCTAATTTACTGCACATGAAAAGGCTTACCAACCCAAG  50

seq1  AAAAGAGCTTCCCCATAGATGGCTTAGTCAGGGTTTCTATTCCTACACAT  100
      |||||| |||||||||| |||||||| |||||||||||||||||||||||
seq2  AAAAGACCTTCCCCATAAATGGCTTAATCAGGGTTTCTATTCCTACACAT  100

seq1  AACATCATGACCAAGAAACAAATTGGGGAGTAAGGTGTTTATTCAGCTTA  150
      |||||| ||||||| |||| ||||||||||||||||||||||||||||||
seq2  AACATCCTGACCAACAAACCAATTGGGGAGTAAGGTGTTTATTCAGCTTA  150

seq1  TACTTCCACATTGCTATTCATCACCAAAGGAAGTTAGGACTGGAACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCACATTGCTATTCATCACCAAAGGAAGTTAGGACTGGAACTCAA  200

seq1  ACAGGTCAGGAAGCGGGAGCTGATACAGAGGCCATGAAGGGATGTAAGTT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGGTCAGGAAGCGGGAGCTGATACAAAGGCCATGAAGGGATGTAAGTT  250

seq1  ACTTAATGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAAC  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTAATGGCTTGCTTCCCCTGGCTTGCTCAACTTGCTTTCTTATAGAAC  300

seq1  CCAAGACTACCAGCCCAGGGATCGCACCACCCACAATGGGCCCTCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTACCAGCCCAGGGATCGCACCACCCACAATGGGCCCTCCCACC  350

seq1  CTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCAT  400

seq1  TTCCTTAAGGGAGGTTCCTCTCTCTGTGATAACTCCAGCTTGTGTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGGGAGGTTCCTCTCTCTGTGATAACTCCAGCTTGTGTCAAGT  450

seq1  TGACACACAAAACCTCTCCTCGGTCTTCGCTGGCCTCTCTGTATTACATC  500
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TGACACACAAAACCTCTCCTCGGTCTTCTCTGGACTCTCTGTATTACATC  500

seq1  CTCTCACTTGTATCTCTAAGAGAAAACCGTGGTAGATAATTCCTTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTGTATCTCTAAGAGAAAACCGTGGTAGATAATTCCTTTGTGG  550

seq1  TACCAGGGCAAATCTTGGCACCTCTGTTGGAGAAGTAAATTCTAAGTAAG  600
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACCAGGGCAAATCTTGGGACCTCTGTTGGAGAAGTAAATTCTAAGTAAG  600

seq1  CCATGTCCTGCTGCATACAAGTTAAGAAAATAGAAAACTGTCCTCTGCCA  650
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCCCGCTGCATACAAGTTAAGAAAATAGAAAACTGTCCTCTGCCA  650

seq1  CAGATCTAGCACCAGGGTCCTAGAAACCTGAAAGAACACACATACAAACA  700
      || |||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CATATCTAGCACCAGGGTCCTAGAAACCTGAGAGAACACACATACGAACA  700

seq1  GAAAGGCTAGCATCAAGTGAGTCATGTGCTCTGATAGAGATGTGCTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTAGCATCAAGTGAGTCATGTGCTCTGATAGAGATGTGCTGGTG  750

seq1  GCAGTCCAGAAACTCAGCACACTTATTGTGTATATCTGAAGGGAAGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  GCAGTCCAGAAACTCAGCACACTTATTGTGTATATCTGAAGTG-AGCAGG  799

seq1  GGGTTGAACTCATATCAATGGGAGGGCTCTGACAGGGAGCAGTCTCCCTG  850
      |||||||||||||||| ||||||||||||||||| |||||| ||||||||
seq2  GGGTTGAACTCATATC-ATGGGAGGGCTCTGACA-GGAGCAATCTCCCTG  847

seq1  TAAACACAGGGGAGGAGGAAACTAGGGTTGATACTTTCTGTAAACACTGT  900
      ||| | || |||||   |||||||||| |||||| |||||||||||||||
seq2  TAATC-CACGGGAG--AGAAACTAGGG-TGATAC-TTCTGTAAACACTGT  892

seq1  CAACACACAGAGCAGGGTAAGGCTTTGCCATCCCCATTGGGTCTGAGGCA  950
      ||| |||||  ||| |||||||||||| ||| ||||||||||||||||||
seq2  CAA-ACACA-CGCATGGTAAGGCTTTG-CAT-CCCATTGGGTCTGAGGCA  938

seq1  TTGGGTTTCTTGAGATGCTGGTGGCCATATCAACAATACATATTCAATTA  1000
      || || ||||||| ||||| ||| |   |||||| | ||  || | ||||
seq2  TT-GGATTCTTGAAATGCT-GTGTC--AATCAACGA-ACCAATGC-ATTA  982

seq1  GGACTTCATCCCTACAG  1017
      |||||||    ||||||
seq2  GGACTTC--TGCTACAG  997