BAC Information

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BAC

Clone NameB6Ng01-144K13
Chromosome9 (Build37)
Map Location 32,358,476 - 32,456,564
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K13.bB6Ng01-144K13.g
ACCDH942278DH942279
length1,1411,152
definitionDH942278|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K13, 5' end.DH942279|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,455,411 - 32,456,564)(32,358,476 - 32,359,639)
sequence
gaattccatatggaataaataaattattgataaaagaataaatagattgt
cttagaggaagaagaaaggggaaaaaaaacttccatgaagaaccccaatc
cttggcacagagatagacagatgctctctcaaaaagactggacaaattca
tctcctatcaagagaagggctcgaaaaaaaataataaaaatgttcttatt
gagagctattatctctgttggaagtctgaatgcaaagaatgttctatgaa
cattctgacttagagggattttccagcaagctactggtcaccaagaaaat
cgttgatatatcaaacatttctgttgagttgagtgctctccagagtgcaa
aagttcacacactttcataaattcaatactacacataaaaatatgcctct
cttgaatgattgagaagattacattcctagcctatcgttcaaaggccaaa
ttcctattgttaggaagtgacttttcatcccacccccacccccgttgctt
ctccagtggccacccctcctgcccccctcattcctgtgtatacttccatc
aatcggcctatttcagaacatagaaagtacagagattggttttgtgtcca
atgtgctgtttcagttccctacgttgatagtgcctgacagccagtgacat
agctatgttcacagggctgtattcccagaatacagctatgctagttaggg
tttcatcttgtccctgctgcaacaaatgaagctaatgagaagctatgaga
agctctgcagtgctaatgctgagtgtctaagaaagatcaaggacggccat
ccaagaacactgcccccatctattgtctgtccaatgattttgctaaaata
ctgtgcagctccataactttggactttgagctgacatgagcacggactag
aggtagatctacacaacacggaccatgtggaccttgtgccaccaggtgtt
ggtgaggatggtgtcttcttgttcattgcccctctgtcacctgaagcata
tctctgtattgattttggtttgtttaacctgaaatttagtttaaggcttt
accagtcctctccaaattgattgaattttcaaggatgagacatttcaagc
ggactgaactccctatactgaatttctatccgtgatgagag
gaattctgctcttaggattcttggggagatgtcgtctttcccaaagggac
agcatactatttcaaacaatggtcaatagaaattactgtctacatgtaca
tcccgtgttcttaaagataagctttctttaggaaagtagagaggtctgaa
gggcttcaggtattctagaggaaatgagagccaaacaaattgtttagtgc
cttaccatccctggtcggtcccccccccccaaccccagccctccgtcttc
cgtcttcctatttatttatctatttctatatttttcaggattgatagtag
gggttggaccaatggctgggcaagtgctctatatcaaagccttcttttca
cttttaattttgagacaggttctcattaagttgtccaggccagtcttgaa
cttgagctcctccaatgcaagcctcccaagatcacaggtttgttaccagc
tcctgcctttttaaaagggagactagtaagaggccaccgacttactgttc
agcagtcctcaaccttcctcatgctgtgaccctttaatacagttccctat
gatgttctgactccaactgtaaaataatttcaatttactttatagctgca
attttgctacagttatgaattgtaatgtaaatatcttctatgtaggatat
ttgatatgcaacctctgtgaaagggttgtttacccccacccgagggatct
caactcacaggttgagaaccgcagctctaagctcttccttctttgtgttt
tttgtatagtcctgagactgtagtcatttgcagaaatatctcttggatgt
ttttttctccttattctcttatgtgcatcctgaaggcggcccagagctaa
ttttattcgaagatgagtagctagtagccacacaaatgcaaacaggtata
ggaaaaggcaacaattacccttaactaattatctttctcttatccaatac
taaagagagatgggaaatgacccagatcatcacatttgtcccacagcaaa
gcttacctgagtggttctgtttcatagtctgctttgcagcagagtgctgg
taggcaatggtccctgcttctattggtgcacagggtgctaaactggccct
gcaatggaaccaatctagctgatggagtgcgtgcgtgcgaggctctggaa
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32455411_32456564
seq2: B6Ng01-144K13.b_44_1184 (reverse)

seq1  CTCTCATCACGGTAAGCCATTTTCAGTATAGGGGATTCAGTTCAGCTTTG  50
      ||||||||||||  ||  |  ||||||||||||  ||||| || ||||  
seq2  CTCTCATCACGGATAG--AAATTCAGTATAGGGAGTTCAG-TCCGCTTGA  47

seq1  AA-GTCTCATCCTTGTATATATCAATACATTTTGAGAGTGACTTGTTAAG  99
      || |||||||||||| | || |||||  |||| ||||| |||| || |||
seq2  AATGTCTCATCCTTGAAAAT-TCAATCAATTTGGAGAG-GACTGGTAAAG  95

seq1  GCCTTTAAACTTAATTTTCAGGTTAAAACAAAACCAAAAATCAATAACAG  149
        | |||||| ||| ||||||||| |||||||  | ||||||||| ||||
seq2  --CCTTAAAC-TAAATTTCAGGTT-AAACAAA--CCAAAATCAAT-ACAG  138

seq1  AGA-ATGCTTCA-GTGACAGAGGGGACATTGAACAAGAAGACACCAT-CT  196
      ||| |||||||| |||||||||||| || |||||||||||||||||| ||
seq2  AGATATGCTTCAGGTGACAGAGGGG-CAATGAACAAGAAGACACCATCCT  187

seq1  CTACAACACCTGGTTGGCAC-AGGTCCACATTGGTCCGTGTTGTGTAGAT  245
      |  |||||||||| |||||| ||||||||| |||||||||||||||||||
seq2  CACCAACACCTGG-TGGCACAAGGTCCACA-TGGTCCGTGTTGTGTAGAT  235

seq1  CTACCTCCTAGTCCGTGCTCATTGTCCAGCTCAAAGTCC-AAGTTATGGA  294
      |||||| |||||||||||||| ||| ||||||||||||| ||||||||||
seq2  CTACCT-CTAGTCCGTGCTCA-TGT-CAGCTCAAAGTCCAAAGTTATGGA  282

seq1  GCTGCACAGTAATTTTAGCAAAATCATTGGACAGACAATAGATGGGGGCA  344
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGT-ATTTTAGCAAAATCATTGGACAGACAATAGATGGGGGCA  331

seq1  GTGTTCTTGGATGGCCGTCCTTGATCTTTCTTAGACACTCAGCATTAGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGATGGCCGTCCTTGATCTTTCTTAGACACTCAGCATTAGCA  381

seq1  CTGCAGAGCTTCTCATAGCTTCTCATTAGCTTCATTTGTTGCAGCAGGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGCTTCTCATAGCTTCTCATTAGCTTCATTTGTTGCAGCAGGGA  431

seq1  CAAGATGAAACCCTAACTAGCATAGCTGTATTCTGGGAATACAGCCCTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAAACCCTAACTAGCATAGCTGTATTCTGGGAATACAGCCCTGT  481

seq1  GAACATAGCTATGTCACTGGCTGTCAGGCACTATCAACGTAGGGAACTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGCTATGTCACTGGCTGTCAGGCACTATCAACGTAGGGAACTGA  531

seq1  AACAGCACATTGGACACAAAACCAATCTCTGTACTTTCTATGTTCTGAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACATTGGACACAAAACCAATCTCTGTACTTTCTATGTTCTGAAA  581

seq1  TAGGCCGATTGATGGAAGTATACACAGGAATGAGGGGGGCAGGAGGGGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCGATTGATGGAAGTATACACAGGAATGAGGGGGGCAGGAGGGGTG  631

seq1  GCCACTGGAGAAGCAACGGGGGTGGGGGTGGGATGAAAAGTCACTTCCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGAGAAGCAACGGGGGTGGGGGTGGGATGAAAAGTCACTTCCTA  681

seq1  ACAATAGGAATTTGGCCTTTGAACGATAGGCTAGGAATGTAATCTTCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGAATTTGGCCTTTGAACGATAGGCTAGGAATGTAATCTTCTCA  731

seq1  ATCATTCAAGAGAGGCATATTTTTATGTGTAGTATTGAATTTATGAAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAAGAGAGGCATATTTTTATGTGTAGTATTGAATTTATGAAAGT  781

seq1  GTGTGAACTTTTGCACTCTGGAGAGCACTCAACTCAACAGAAATGTTTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACTTTTGCACTCTGGAGAGCACTCAACTCAACAGAAATGTTTGA  831

seq1  TATATCAACGATTTTCTTGGTGACCAGTAGCTTGCTGGAAAATCCCTCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAACGATTTTCTTGGTGACCAGTAGCTTGCTGGAAAATCCCTCTA  881

seq1  AGTCAGAATGTTCATAGAACATTCTTTGCATTCAGACTTCCAACAGAGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATGTTCATAGAACATTCTTTGCATTCAGACTTCCAACAGAGAT  931

seq1  AATAGCTCTCAATAAGAACATTTTTATTATTTTTTTTCGAGCCCTTCTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCTCAATAAGAACATTTTTATTATTTTTTTTCGAGCCCTTCTCT  981

seq1  TGATAGGAGATGAATTTGTCCAGTCTTTTTGAGAGAGCATCTGTCTATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAGATGAATTTGTCCAGTCTTTTTGAGAGAGCATCTGTCTATCT  1031

seq1  CTGTGCCAAGGATTGGGGTTCTTCATGGAAGTTTTTTTTCCCCTTTCTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAAGGATTGGGGTTCTTCATGGAAGTTTTTTTTCCCCTTTCTTC  1081

seq1  TTCCTCTAAGACAATCTATTTATTCTTTTATCAATAATTTATTTATTCCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAAGACAATCTATTTATTCTTTTATCAATAATTTATTTATTCCA  1131

seq1  TATGGAATTC  1154
      ||||||||||
seq2  TATGGAATTC  1141

seq1: chr9_32358476_32359639
seq2: B6Ng01-144K13.g_70_1221

seq1  GAATTCTGCTCTTAGGATTCTTGGGGAGATGTCGTCTTTCCCAAAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCTTAGGATTCTTGGGGAGATGTCGTCTTTCCCAAAGGGAC  50

seq1  AGCATACTATTTCAAACAATGGTCAATAGAAATTACTGTCTACATGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTATTTCAAACAATGGTCAATAGAAATTACTGTCTACATGTACA  100

seq1  TCCCGTGTTCTTAAAGATAAGCTTTCTTTAGGAAAGTAGAGAGGTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGTTCTTAAAGATAAGCTTTCTTTAGGAAAGTAGAGAGGTCTGAA  150

seq1  GGGCTTCAGGTATTCTAGAGGAAATGAGAGCCAAACAAATTGTTTAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCAGGTATTCTAGAGGAAATGAGAGCCAAACAAATTGTTTAGTGC  200

seq1  CTTACCATCCCTGGTCGGTCCCCCCCCCCCAACCCCAGCCCTCCGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATCCCTGGTCGGTCCCCCCCCCCCAACCCCAGCCCTCCGTCTTC  250

seq1  CGTCTTCCTATTTATTTATCTATTTCTATATTTTTCAGGATTGATAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCCTATTTATTTATCTATTTCTATATTTTTCAGGATTGATAGTAG  300

seq1  GGGTTGGACCAATGGCTGGGCAAGTGCTCTATATCAAAGCCTTCTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGACCAATGGCTGGGCAAGTGCTCTATATCAAAGCCTTCTTTTCA  350

seq1  CTTTTAATTTTGAGACAGGTTCTCATTAAGTTGTCCAGGCCAGTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTTGAGACAGGTTCTCATTAAGTTGTCCAGGCCAGTCTTGAA  400

seq1  CTTGAGCTCCTCCAATGCAAGCCTCCCAAGATCACAGGTTTGTTACCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTCCTCCAATGCAAGCCTCCCAAGATCACAGGTTTGTTACCAGC  450

seq1  TCCTGCCTTTTTAAAAGGGAGACTAGTAAGAGGCCACCGACTTACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTTTTAAAAGGGAGACTAGTAAGAGGCCACCGACTTACTGTTC  500

seq1  AGCAGTCCTCAACCTTCCTCATGCTGTGACCCTTTAATACAGTTCCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCTCAACCTTCCTCATGCTGTGACCCTTTAATACAGTTCCCTAT  550

seq1  GATGTTCTGACTCCAACTGTAAAATAATTTCAATTTACTTTATAGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGACTCCAACTGTAAAATAATTTCAATTTACTTTATAGCTGCA  600

seq1  ATTTTGCTACAGTTATGAATTGTAATGTAAATATCTTCTATGTAGGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTACAGTTATGAATTGTAATGTAAATATCTTCTATGTAGGATAT  650

seq1  TTGATATGCAACCTCTGTGAAAGGGTTGTTTACCCCCACCCGAGGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGCAACCTCTGTGAAAGGGTTGTTTACCCCCACCCGAGGGATCT  700

seq1  CAACTCACAGGTTGAGAACCGCAGCTCTAAGCTCTTCCTTCTTTGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACAGGTTGAGAACCGCAGCTCTAAGCTCTTCCTTCTTTGTGTTT  750

seq1  TTTGTATAGTCCTGAGACTGTAGTCATTTGCAGAAATATCTCTTGGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAGTCCTGAGACTGTAGTCATTTGCAGAAATATCTCTTGGATGT  800

seq1  TTTTTTCTCCTTATTCTCTTATGTGCATCCTGAAGGCAGGCCCAGAGCTA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTTTCTCCTTATTCTCTTATGTGCATCCTGAAGGC-GGCCCAGAGCTA  849

seq1  ATTTTATTCGAAGATGAGTAGCTAGTAGCCACACAAATGCAAACAGGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCGAAGATGAGTAGCTAGTAGCCACACAAATGCAAACAGGTAT  899

seq1  A-GAAAAGGCAACAATTACCCTTAACTAATTATCTTTCTCTTAACCAATA  949
      | ||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  AGGAAAAGGCAACAATTACCCTTAACTAATTATCTTTCTCTTATCCAAT-  948

seq1  ACTAAAGAGAAGAATGGGAAATGACCCAGATCATCACATTTGTCCCAACA  999
      ||||||||||   ||||||||||||||||||||||||||||||||| |||
seq2  ACTAAAGAGA--GATGGGAAATGACCCAGATCATCACATTTGTCCC-ACA  995

seq1  GCAAAGCTTTACCTGAGTGGTTCTGTTTCATAGTCTGCTTTGCAGCAAGA  1049
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAAGC-TTACCTGAGTGGTTCTGTTTCATAGTCTGCTTTGCAGC-AGA  1043

seq1  GTGCCTGGTA-GCAATGGTCACTTGCTTC-ATTTGTGCACAGGTGGCTTA  1097
      ||| |||||| ||||||||| | |||||| ||| |||||||||  ||| |
seq2  GTG-CTGGTAGGCAATGGTC-CCTGCTTCTATTGGTGCACAGGGTGCTAA  1091

seq1  ACCATGGCCCTGCGATGGACCCATATCTAAGCTGATGGAGGTGC-TGCCT  1146
      ||  ||||||||| ||||| ||| |||| |||||||||| |||| |||  
seq2  AC--TGGCCCTGCAATGGAACCA-ATCT-AGCTGATGGA-GTGCGTGC--  1134

seq1  GTTCGAGGCTCTGGAACA  1164
      || |||||||||||||||
seq2  GTGCGAGGCTCTGGAACA  1152