BAC Information

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BAC

Clone NameB6Ng01-145J15
Chromosome2 (Build37)9 (Build37)
Map Location 142,776,346 - 142,776,880116,505,967 - 116,507,048
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145J15.bB6Ng01-145J15.g
ACCDH942961DH942962
length8951,059
definitionDH942961|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J15, 5' end.DH942962|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,346 - 142,776,880)(116,505,967 - 116,507,048)
sequence
gaattcaacaacagagtatgttagacctggcacagggaaaacacacacac
acacacacacacacacacacacacacacacagcatacacaaacatagcta
gcacacatacactcaacacacacatacagagcacacatacttgcagcaca
taacatagcacatacacagacacacaaacacaaaacacacacacacaagc
agcacacatacacacacacacttgccccattcataagtctctgaaaaaat
acaattcttcctcctccatctttttctactgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgttgcgggggcgggggcacactgtgtgggt
ggttggtgcgcgtggatttgaccttaagagagggaggtaagtgtggatcg
attcacattcttctacacgataacaaccagttgtgccagcaccaattgtt
gaaaatgctgtctttcttccactggatggttttagctcccttgtggaaga
tcaagtgaccataggtgtgtgggttcatttctggatcttcaattctattc
cattggtctacttgtctgtctctataccagtaccatgcagtttttatcac
aattgctctgtagtaaagctttaggtctggcatggtgattccgccagaag
ttcttttatccttgagaagactttttgctatcctaggttttttgttattc
cagacaaatttgcaaattgctccttccaattcgttgaataattgagttga
attttgatggggattgcattgaatctgtagattgcttttggcaagatagc
catttttacaatgtgatcctgccaatccatgagcatggagatcgtttcat
cttcatagatcttacttaatttctttcttagagatatgaagtttt
gaattcaacaccttgaacccacagagtggaggaaaagaaccaaccttgga
agttgtttccggatctccacatacatgctaaggcattcatgtgtacgcac
ccctcacccgtgggcaggcacactaaacaaataagtaaatgtaattcgaa
aaaagaactgcttaatgaatctgtcttttatattattattctagactcac
aatagcaggcatgatttctagacacagaagtggacacctaaccaagatcc
ttgtgttgggtttgagcagagactcctgctgaaatattgaactcctctaa
ctgtaaaccaacctagaagcagaaatggactttttttctcgttttgtgac
tttctgttcttcacatgtatgttaattttattaacacatgagtagtgcta
tataatttcagttgggggatatccttactttatgaatgcattttgtttat
ttttaaatatctagatgattggcaacaaagtgatttgaggtttacttata
gactaccccaccaaaacgaagattgtttaagaactaaatggtgggacact
tctcttactatgtgtgaggtccagagttcaatccaagccctgcacaagca
aagccataaagagagtaaatcacactgcactctgcttcagatgaaagcaa
atgaatggtggagattgcgttcctggtatatatgcaagtggtctagaaca
gaaaagacgataatcaattgagacattgggacgagagggatgactcagtg
attaagagcacttctgtctgagtttgattcccagcacccatgtcgggcaa
ttcacaactgcctgtaaccccagctcttgcatatccgacaccctcctcta
gcttccccagtcactgcacacgcccacccctcacacacacatgtaaatta
atttttagaactggtatttcaccttgagagatggctttgaatgtacacac
agagactctcattgagaagtcttgtccacaggtataatgccttttttgtc
aactatcattactactaagtagggtagaagcattttacttctatttcaga
caatatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776346_142776880
seq2: B6Ng01-145J15.b_409_939 (reverse)

seq1  AAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGG  50
      |||||||||  ||||| ||||||||||||||  |||||||  ||||||| 
seq2  AAAACTTCATATCTCT-AAGAAAGAAATTAAGTAAGATCTATGAAGATGA  49

seq1  AAGGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGC  100
      || ||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AACGATCT-CCATGCTCATGGATTGGCAGGATC-ACATTGTAAAAATGGC  97

seq1  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT-  146

seq1  CAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGG  200
      |||||||||| ||||||||||| ||||||||||||||||||||  |||||
seq2  CAACTCAATTATTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGG  196

seq1  AATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAAC  246

seq1  CTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTG  300
       ||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTG  296

seq1  TGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGG  346

seq1  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCACTTGAT  396

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCA  450
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  446

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATC  500
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGTGAATC  496

seq1  GATCCATACTTATCTCCTTGTACTAAGGTCAAATC  535
      |||||| ||||| |||| | |  ||||||||||||
seq2  GATCCACACTTACCTCCCTCTCTTAAGGTCAAATC  531

seq1: chr9_116505967_116507048
seq2: B6Ng01-145J15.g_66_1124

seq1  GAATTCAACACCTTGAACCCACAGAGTGGAGGAAAAGAACCAACCTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCTTGAACCCACAGAGTGGAGGAAAAGAACCAACCTTGGA  50

seq1  AGTTGTTTCCGGATCTCCACATACATGCTAAGGCATTCATGTGTACGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTCCGGATCTCCACATACATGCTAAGGCATTCATGTGTACGCAC  100

seq1  CCCTCACCCGTGGGCAGGCACACTAAACAAATAAGTAAATGTAATTCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCCGTGGGCAGGCACACTAAACAAATAAGTAAATGTAATTCGAA  150

seq1  AAAAGAACTGCTTAATGAATCTGTCTTTTATATTATTATTCTAGACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTGCTTAATGAATCTGTCTTTTATATTATTATTCTAGACTCAC  200

seq1  AATAGCAGGCATGATTTCTAGACACAGAAGTGGACACCTAACCAAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGCATGATTTCTAGACACAGAAGTGGACACCTAACCAAGATCC  250

seq1  TTGTGTTGGGTTTGAGCAGAGACTCCTGCTGAAATATTGAACTCCTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGGGTTTGAGCAGAGACTCCTGCTGAAATATTGAACTCCTCTAA  300

seq1  CTGTAAACCAACCTAGAAGCAGAAATGGACTTTTTTTCTCGTTTTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCAACCTAGAAGCAGAAATGGACTTTTTTTCTCGTTTTGTGAC  350

seq1  TTTCTGTTCTTCACATGTATGTTAATTTTATTAACACATGAGTAGTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCTTCACATGTATGTTAATTTTATTAACACATGAGTAGTGCTA  400

seq1  TATAATTTCAGTTGGGGGATATCCTTACTTTATGAATGCATTTTGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCAGTTGGGGGATATCCTTACTTTATGAATGCATTTTGTTTAT  450

seq1  TTTTAAATATCTAGATGATTGGCAACAAAGTGATTTGAGGTTTACTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATCTAGATGATTGGCAACAAAGTGATTTGAGGTTTACTTATA  500

seq1  GACTACCCCACCAAAACGAAGATTGTTTAAGAACTAAATGGTGGGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCCCACCAAAACGAAGATTGTTTAAGAACTAAATGGTGGGACACT  550

seq1  TCTCTTACTATGTGTGAGGTCCAGAGTTCAATCCAAGCCCTGCACAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACTATGTGTGAGGTCCAGAGTTCAATCCAAGCCCTGCACAAGCA  600

seq1  AAGCCATAAAGAGAGTAAATCACACTGCACTCTGCTTCAGATGAAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAAAGAGAGTAAATCACACTGCACTCTGCTTCAGATGAAAGCAA  650

seq1  ATGAATGGTGGAGATTGCGTTCCTGGTATATATGCAAGTGGTCTAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTGGAGATTGCGTTCCTGGTATATATGCAAGTGGTCTAGAACA  700

seq1  GAAAAGACGATAATCAATTGAGACATTGGGACGAGAGGGATGACTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACGATAATCAATTGAGACATTGGGACGAGAGGGATGACTCAGTG  750

seq1  ATTAAGAGCACTTCTGTCTGAGTTTGATTCCCAGCACCCATGTCGGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGCACTTCTGTCTGAGTTTGATTCCCAGCACCCATGTCGGGCAA  800

seq1  TTCACAACTGCCTGTAACCCCAGCTCTTGCATATCCGACACCCTCCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACTGCCTGTAACCCCAGCTCTTGCATATCCGACACCCTCCTCTA  850

seq1  GCTTCCCCAGTCACTGCACACGCCCCACCCCTCACACACACATGTAAAAT  900
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GCTTCCCCAGTCACTGCACACG-CCCACCCCTCACACACACATGT-AAAT  898

seq1  TAATTTTTAAGAAACTGGTAATTTCACCTTGAAGAGATGGCTTTTGATAT  950
      |||||||||   ||||||| ||||||||||| ||||||||| ||||| ||
seq2  TAATTTTTA--GAACTGGT-ATTTCACCTTG-AGAGATGGC-TTTGA-AT  942

seq1  GTACACAACAGAAGAACTTCTCAATTGAGAAGTCTTGTCCCACAGGTATT  1000
      |||||| |||| |||   |||| ||||||||||||||| ||||||||| |
seq2  GTACAC-ACAG-AGA--CTCTC-ATTGAGAAGTCTTGT-CCACAGGTA-T  985

seq1  AATGGCTTTTTTGTCAAACTAATCATTACCTACTTAAGTAGGGTTAGAAG  1050
      |||| |||||||||| |||| ||||||| |||| ||||||||| ||||||
seq2  AATGCCTTTTTTGTC-AACT-ATCATTA-CTAC-TAAGTAGGG-TAGAAG  1030

seq1  CCATTTTACTTCATATTTCAAGACAATATCAA  1082
       ||||||||||| |||||| ||||||||||||
seq2  -CATTTTACTTC-TATTTC-AGACAATATCAA  1059