BAC Information

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BAC

Clone NameB6Ng01-146A16
Chromosome9 (Build37)
Map Location 21,137,075 - 21,302,410
singlet/doubletdoublet
Overlap geneSlc44a2, Ilf3, Qtrt1, Dnm2
Upstream geneOlfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2
Downstream geneTmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A16.bB6Ng01-146A16.g
ACCDH943286DH943287
length1,0731,128
definitionDH943286|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A16, 5' end.DH943287|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,301,336 - 21,302,410)(21,137,075 - 21,138,205)
sequence
gaattcctgatcctctcgcatcttgctcaccaatgctgtaaggagttacc
gcttgagccatgagtcacacccagttcatgaagcactaggaaaagctcca
acaactgagctgggcctcagcccatcacctggacatgtcctcctgtgtgt
gtcatgtgcaacacactgaggagaaccaagaggccttcatggggaagatg
atgtttacttctgtgagacaagtgcttttactaaacctggagccagcaag
ccccagcctcctcctctttgcacacctagtgctgaagtcccaggcactca
cagcacccatgggtgcgcaggtgcgtaagtactcttccccacagagcact
ctctccaggctcactggagatccttcatgactctttctcatgtttctgtc
cactgcacgaacagaaagtcccagaaagcagctttgtggaatacaattct
gaattcccccgtagctctagtgcagaatggggccagtctgaacactgtat
gaggaactgctgtgttcaagctttgctctgcctttgaacacactgcttct
cctctgcgttcccgatccccatctgtctgaggaatgatgagtgttactct
tggggagggtggcacagtttgtggccccagtttccagccaattcatggac
tggctcccagtcaacctcaccaggtctgactgcctgaatgaagcacaggc
ggagaggctgtgagcagggagtgtggaacactcgcacacacgcgcacgcg
cgtgcgcgcgcgcacacacacacacacacacacacactgcataccgagag
ctccagacagggaaggctgcctgaagtctgtcttgttataagaaacaaac
ctgggattttggggatccccaaggagcccctgtttccagaggagggtatg
ttcccagaagcaactctgtggcccttacctatggtgtcacgagacagaaa
gcttcctgccagcagccagggcccagtaaatgagtcacagacatctaggc
ttgccacatctggaactgttaatgtgtgaatttggcccaggatcggggtg
gctgcatcctctctcctcttctt
gaattcacacctgggtcctcacgcttataggtcaagtgctctttactcat
ttagctgtagcttaaacttcccattctcctacctctattccccaagggtt
gccatggcgtgtggagcacgtgtgtattcagccccaggagtggaggactt
cgtgcctctgagacaggggctttattcacttcccctccctactctggcac
tcagctttctgttcagattgtctggttttgtggttacaaagacccaggct
cccatcctgcagggggtgaatcagcctccattaccagaaagttttgcaag
catcccctcctctctcatccctaagcagctgagcttaacgagggctgccg
gaacccatcagactgtgccaggagtggtctaggttttccccaagaggcct
cagtgccaggctggagccaagccattcctgtgccttctctacatttaagt
aaaattgcatttatctattatgtgtgtagaggcctgcaggcaggcatgct
cacttccttgcctgcacacagacgtcagaggtcagaggctaacttgcagg
agtcagtcctttgtcttcaatatgtggggcctggggatggaactcaggtc
atcagcctcagcagcaagtacctgtatcttctgagccatttcacaactcc
ccccgccccctactccgcaccccgcaccccgcaccctgcaatctaagatc
tgtctgaaggttaatccaaattctatctttctgtcactgtcaactgctag
acaacacggacatctccttcctttcaccgggtctatgttattgctcagtc
actcttagtggctcccacgtgcccatcaaacctaagctgggggtgggcag
tttaggagacctggttacacgagtttcccaatgtaaagagggttgcaagg
tgtcaacagtacctgtcttcatgtggctgtcccttgggccagggtcccag
ttgacactagaagcatgaaataactcccttaccttttctccccactcccc
tcccaaccttgcttatcagagaacacagtttcctgagtttcttcatgctt
taaaagtgaggctaactttgcatgataatcccctatgaatttgttgccct
cgaagtcaggacacagtataaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21301336_21302410
seq2: B6Ng01-146A16.b_50_1122 (reverse)

seq1  AAGAGAGAGAGAGAGAGATGGCAGCCA-CCCGATCCTGGG-CAGAATCAC  48
      |||| |||| |||||||   ||||||| |||||||||||| || | ||||
seq2  AAGA-AGAG-GAGAGAGGATGCAGCCACCCCGATCCTGGGCCAAATTCAC  48

seq1  ACATAAACAGTTCCAGATGTGGCAAGCCTAGATGTCTGTGACTCATTTAC  98
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACAGTTCCAGATGTGGCAAGCCTAGATGTCTGTGACTCATTTAC  98

seq1  TTGGCCCTGGCCTGCTGGCAGGAAGCTTTCTGTCTCGTGACACCATAGGG  148
      | |||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TGGGCCCTGG-CTGCTGGCAGGAAGCTTTCTGTCTCGTGACACCATA-GG  146

seq1  TAGGGGCCACAGAGTTGCTTCTGGGAACTTACCCTCCTCTGGAAACAGAG  198
      || ||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TAAGGGCCACAGAGTTGCTTCTGGGAACATACCCTCCTCTGGAAACAGGG  196

seq1  GCTCCTTTGGGGATCCCCAAAATCCCAGGTTTGTTTCTTATAACAAGACA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCC-TTGGGGATCCCCAAAATCCCAGGTTTGTTTCTTATAACAAGACA  245

seq1  GACTTCAGGCCGCCTTCCCTGTCTGGAGCTCTCGGTATGCAGTGTGTGTG  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGCAGCCTTCCCTGTCTGGAGCTCTCGGTATGCAGTGTGTGTG  295

seq1  TGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGCGCGTGTGTGCGAGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGCGCGTGTGTGCGAGTG  345

seq1  TTCCACACTCCCTGCTCACAGCCTCTCCGCCTGTGCTTCATTCAGGCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACTCCCTGCTCACAGCCTCTCCGCCTGTGCTTCATTCAGGCAGT  395

seq1  CAGACCTGGTGAGGTTGACTGGGAGCCAGTCCATGAATTGGCTGGAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGGTGAGGTTGACTGGGAGCCAGTCCATGAATTGGCTGGAAACT  445

seq1  GGGGCCAC-AACTGTGCCACCCTCCCCAAGAGTAACACTCATCATTCCTC  497
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCACAAACTGTGCCACCCTCCCCAAGAGTAACACTCATCATTCCTC  495

seq1  AGACAGATGGGGATCGGGAACGCAGAGGAGAAGCAGTGTGTTCAAAGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGGGGATCGGGAACGCAGAGGAGAAGCAGTGTGTTCAAAGGCA  545

seq1  GAGCAAAGCTTGAACACAGCAGTTCCTCATACAGTGTTCAGACTGGCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGCTTGAACACAGCAGTTCCTCATACAGTGTTCAGACTGGCCCC  595

seq1  ATTCTGCACTAGAGCTACGGGGGAATTCAGAATTGTATTCCACAAAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACTAGAGCTACGGGGGAATTCAGAATTGTATTCCACAAAGCTG  645

seq1  CTTTCTGGGACTTTCTGTTCGTGCAGTGGACAGAAACATGAGAAAGAGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGGACTTTCTGTTCGTGCAGTGGACAGAAACATGAGAAAGAGTC  695

seq1  ATGAAGGATCTCCAGTGAGCCTGGAGAGAGTGCTCTGTGGGGAAGAGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGATCTCCAGTGAGCCTGGAGAGAGTGCTCTGTGGGGAAGAGTAC  745

seq1  TTACGCACCTGCGCACCCATGGGTGCTGTGAGTGCCTGGGACTTCAGCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCACCTGCGCACCCATGGGTGCTGTGAGTGCCTGGGACTTCAGCAC  795

seq1  TAGGTGTGCAAAGAGGAGGAGGCTGGGGCTTGCTGGCTCCAGGTTTAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGCAAAGAGGAGGAGGCTGGGGCTTGCTGGCTCCAGGTTTAGTA  845

seq1  AAAGCACTTGTCTCACAGAAGTAAACATCATCTTCCCCATGAAGGCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTGTCTCACAGAAGTAAACATCATCTTCCCCATGAAGGCCTCT  895

seq1  TGGTTCTCCTCAGTGTGTTGCACATGACACACACAGGAGGACATGTCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCTCAGTGTGTTGCACATGACACACACAGGAGGACATGTCCAG  945

seq1  GTGATGGGCTGAGGCCCAGCTCAGTTGTTGGAGCTTTTCCTAGTGCTTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGCTGAGGCCCAGCTCAGTTGTTGGAGCTTTTCCTAGTGCTTCA  995

seq1  TGAACTGGGTGTGACTCATGGCTCAAGCGGTAACTCCTTACAGCATTGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGGTGTGACTCATGGCTCAAGCGGTAACTCCTTACAGCATTGGT  1045

seq1  GAGCAAGATGCGAGAGGATCAGGAATTC  1075
      ||||||||||||||||||||||||||||
seq2  GAGCAAGATGCGAGAGGATCAGGAATTC  1073

seq1: chr9_21137075_21138205
seq2: B6Ng01-146A16.g_66_1193

seq1  GAATTCACACCTGGGTCCTCACGCTTATAGGTCAAGTGCTCTTTACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCTGGGTCCTCACGCTTATAGGTCAAGTGCTCTTTACTCAT  50

seq1  TTAGCTGTAGCTTAAACTTCCCATTCTCCTACCTCTATTCCCCAAGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTAGCTTAAACTTCCCATTCTCCTACCTCTATTCCCCAAGGGTT  100

seq1  GCCATGGCGTGTGGAGCACGTGTGTATTCAGCCCCAGGAGTGGAGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCGTGTGGAGCACGTGTGTATTCAGCCCCAGGAGTGGAGGACTT  150

seq1  CGTGCCTCTGAGACAGGGGCTTTATTCACTTCCCCTCCCTACTCTGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTCTGAGACAGGGGCTTTATTCACTTCCCCTCCCTACTCTGGCAC  200

seq1  TCAGCTTTCTGTTCAGATTGTCTGGTTTTGTGGTTACAAAGACCCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCTGTTCAGATTGTCTGGTTTTGTGGTTACAAAGACCCAGGCT  250

seq1  CCCATCCTGCAGGGGGTGAATCAGCCTCCATTACCAGAAAGTTTTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGCAGGGGGTGAATCAGCCTCCATTACCAGAAAGTTTTGCAAG  300

seq1  CATCCCCTCCTCTCTCATCCCTAAGCAGCTGAGCTTAACGAGGGCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTCCTCTCTCATCCCTAAGCAGCTGAGCTTAACGAGGGCTGCCG  350

seq1  GAACCCATCAGACTGTGCCAGGAGTGGTCTAGGTTTTCCCCAAGAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATCAGACTGTGCCAGGAGTGGTCTAGGTTTTCCCCAAGAGGCCT  400

seq1  CAGTGCCAGGCTGGAGCCAAGCCATTCCTGTGCCTTCTCTACATTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAGGCTGGAGCCAAGCCATTCCTGTGCCTTCTCTACATTTAAGT  450

seq1  AAAATTGCATTTATCTATTATGTGTGTAGAGGCCTGCAGGCAGGCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCATTTATCTATTATGTGTGTAGAGGCCTGCAGGCAGGCATGCT  500

seq1  CACTTCCTTGCCTGCACACAGACGTCAGAGGTCAGAGGCTAACTTGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTGCCTGCACACAGACGTCAGAGGTCAGAGGCTAACTTGCAGG  550

seq1  AGTCAGTCCTTTGTCTTCAATATGTGGGGCCTGGGGATGGAACTCAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCCTTTGTCTTCAATATGTGGGGCCTGGGGATGGAACTCAGGTC  600

seq1  ATCAGCCTCAGCAGCAAGTACCTGTATCTTCTGAGCCATTTCACAACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTCAGCAGCAAGTACCTGTATCTTCTGAGCCATTTCACAACTCC  650

seq1  CCCCGCCCCCTACTCCGCACCCCGCACCCCGCACCCTGCAATCTAAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCCTACTCCGCACCCCGCACCCCGCACCCTGCAATCTAAGATC  700

seq1  TGTCTGAAGGTTAATCCAAATTCTATCTTTCTGTCACTGTCAACTGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGGTTAATCCAAATTCTATCTTTCTGTCACTGTCAACTGCTAG  750

seq1  ACAACACGGACATCTCCTTCC-TTCACCGGGTCTATGTTATTGCTCAGTC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAACACGGACATCTCCTTCCTTTCACCGGGTCTATGTTATTGCTCAGTC  800

seq1  ACTCTTAGTGGCTCCCACGTGCCCATCAAACCTAAGCTGGGGGTGGGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTGGCTCCCACGTGCCCATCAAACCTAAGCTGGGGGTGGGCAG  850

seq1  TTTAGGAGACCTGGTTACACGAGTTTCCC-ATGTAAAGAGGGTTGCAAGG  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAGGAGACCTGGTTACACGAGTTTCCCAATGTAAAGAGGGTTGCAAGG  900

seq1  TGTCAACAGTACCTGTCTTCATGTGGCTGTCCCTTGGGCCAGGGGTCCCA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCAACAGTACCTGTCTTCATGTGGCTGTCCCTTGGGCCA-GGGTCCCA  949

seq1  GTTGACACTAGAAGCATGAAAT-ACTCCCTTACC-TTTCTCCCCACTCCC  996
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  GTTGACACTAGAAGCATGAAATAACTCCCTTACCTTTTCTCCCCACTCCC  999

seq1  CTCCCAACCTTGC-TATCAAGAG-ACACAGTTTCCTGCAGTTTCTTCATG  1044
      ||||||||||||| |||| |||| ||||||||||||| ||||||||||||
seq2  CTCCCAACCTTGCTTATC-AGAGAACACAGTTTCCTG-AGTTTCTTCATG  1047

seq1  CTTTTAATAGTTGAGGGTTTAACTATTAGCATGATTAATTCTCATGGAAT  1094
      | ||||| || |||||   ||||  || |||||| |||| | |   ||||
seq2  C-TTTAAAAG-TGAGG--CTAAC--TTTGCATGA-TAATCCCCTATGAAT  1090

seq1  TTGTTTGCCTCTGAGTCAGGACA-AGGTTAAATTTATT  1131
      |||||  ||||  |||||||||| ||  ||||||||||
seq2  TTGTTGCCCTCGAAGTCAGGACACAGTATAAATTTATT  1128