BAC Information

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BAC

Clone NameB6Ng01-146A17
Chromosome9 (Build37)
Map Location 73,213,591 - 73,333,676
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneLOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A17.bB6Ng01-146A17.g
ACCDH943288DH943289
length1,0201,062
definitionDH943288|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A17, 5' end.DH943289|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,332,650 - 73,333,676)(73,213,591 - 73,214,656)
sequence
gaattcagcatgcagtcagtttttattagttcccagggctctgctgtgtc
acaagagagtacagagaacaatgcaatcggtaaagtgttattaggacgga
gaaggggtgctggcccaggtctgcttttctcctctggatatccaggcact
gttgcgcactggaacaaacttcaactggaaggaacaaaccttagccgggc
tgggccagtgggttagataggatctcagtcagcatgagtctcagagaaac
agccttctccagacagggttttaagtgaaaaagctctctttattggggag
ctgggggattaacaaagattataaaaccttggagagtaagggttttcggg
gtgagtatgcattattggctgaggagctgggaacgctttgtttgcatgaa
ggggaattccaggtgcttactgaatctgtccttataaggatagaggacat
ttaacctgtaatctggccagcatgctatgtgattctctcaatgatgatgg
aggacatggagacacagagcagggaggaagcaggcctgctcctgctggtc
tcaggatgagatttttgacctcactcttgttcccaacctggactggctcc
ccccagttgcatggctttcttgcccccccccccccccagggagaactgaa
aactttcatggtgataggaattgggcatctggtgaattttcattgaatat
atagcatttagtatttggccaaattgggctaaggatggctctccctaagt
ctcaagcttgtaaactctgtgagcactgatcagtgtccaacatgagatat
taatagaattaccatttaatcctcaggcaaagaaaatagattcccacaga
cgtgtagtgtgaacattcatgctagtacatttcttctgtttgcaggtcgt
tcctccaagatgctgtagccagatctctgtcatgtgatgtcaccacactc
acggactggagaccataaagtcactgtgaaagtacatctggggttcagat
attgcacctattaaccttca
gaattcaaagaccaagtcatcctggaatgttattacttctagttatagga
agtaatttaaaagtctcaagaatattagttatttataaacaagcttaaaa
cagagacacctggcttctcaaaacgagagttttgggagaaaggaggcaga
acagcgtggcactgccacatggtggagagaatgctggtttatggcaagga
cataaaccaagatagtccgtagttgtagataagcttgcctcccctagttg
agactctagtgaaacttccaagcatttggtaatgagttacctcattgcat
ggattcctatttggttagaatcacataagccactgaggcttgagagttcc
tctgaccaatcctggcttgtcttaatgttcctaagtcgggaggtctgcta
tagaagacctctgtccaaaatgaggagaggggagatgggctgtgaggata
cccagccagctttaggtttccctcatttcttaaccccctttaatattata
taactgtaaatctcatgctttaacagagagaagaatggaggagggaagag
agtctttatctttggctctactctgctgcccagatgtcacagattgttga
ttctttcttcgttctgtttaggttttctggggaaagggtgaaggtggtgg
ggccatgatacttaatttgtgcacaatctctagtcaggcggcaggagctc
atgtaaactttcttttcctggggcttacatagatattatattttaatgga
aacaaaagcattacataagagttcaggaatgtttaatgacttccttaaat
ttaatatatatcaaataaatgtgtaagattgagcttagaaaactgtctta
cagttcgtcaacctagaatctgtgttagagggagatcttttgggttaaga
atcgggcacagaatgtagcgccaacagcaccattgcagaggcttcacgtt
tttgtttctgatgcttttatgtctcaaaagagctaccaataggtcatatt
cttggggatccttgatagagacttgtcatgtatcaagataaatgctaaaa
ttccagtccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73332650_73333676
seq2: B6Ng01-146A17.b_47_1066 (reverse)

seq1  TGAAGGTTAATAGGTGCAATATCTGAACCCCAGATGTACCTTTCACAGTG  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAAGGTTAATAGGTGCAATATCTGAACCCCAGATGTA-CTTTCACAGTG  49

seq1  ACTTTATGGTCTCCAGTCCCTGGGGTGGTGGTGACATCCACATGGACAGA  100
      ||||||||||||||||||| || |   |||||||||| ||||| ||||||
seq2  ACTTTATGGTCTCCAGTCCGTGAG--TGTGGTGACAT-CACAT-GACAGA  95

seq1  GATCTGGCCTACAGCATCTTTGGAGGAACGACCTGCAAACAGAAGAAATG  150
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  GATCTGG-CTACAGCATC-TTGGAGGAACGACCTGCAAACAGAAGAAATG  143

seq1  TACTAGCATGAATGTTCACACTACACGTCTGTGGGAATCTATTTTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCATGAATGTTCACACTACACGTCTGTGGGAATCTATTTTCTTTG  193

seq1  CCTGAGGATTAAATGGTAATTCTATTAATATCTCATGTTGGACACTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATTAAATGGTAATTCTATTAATATCTCATGTTGGACACTGATC  243

seq1  AGTGCTCACAGAGTTTACAAGCTTGAGACTTAGGGAGAGCCATCCTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCACAGAGTTTACAAGCTTGAGACTTAGGGAGAGCCATCCTTAGC  293

seq1  CCAATTTGGCCAAATACTAAATGCTATATATTCAATGAAAATTCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGGCCAAATACTAAATGCTATATATTCAATGAAAATTCACCAGA  343

seq1  TGCCCAATTCCTATCACCATGAAAGTTTTCAGTTCTCCCTGGGGGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAATTCCTATCACCATGAAAGTTTTCAGTTCTCCCTGGGGGGGGGG  393

seq1  GGGGGCAAGAAAGCCATGCAACTGGGGGGAGCCAGTCCAGGTTGGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAAGAAAGCCATGCAACTGGGGGGAGCCAGTCCAGGTTGGGAACA  443

seq1  AGAGTGAGGTCAAAAATCTCATCCTGAGACCAGCAGGAGCAGGCCTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGTCAAAAATCTCATCCTGAGACCAGCAGGAGCAGGCCTGCTT  493

seq1  CCTCCCTGCTCTGTGTCTCCATGTCCTCCATCATCATTGAGAGAATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCTCTGTGTCTCCATGTCCTCCATCATCATTGAGAGAATCACA  543

seq1  TAGCATGCTGGCCAGATTACAGGTTAAATGTCCTCTATCCTTATAAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCTGGCCAGATTACAGGTTAAATGTCCTCTATCCTTATAAGGAC  593

seq1  AGATTCAGTAAGCACCTGGAATTCCCCTTCATGCAAACAAAGCGTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGTAAGCACCTGGAATTCCCCTTCATGCAAACAAAGCGTTCCCA  643

seq1  GCTCCTCAGCCAATAATGCATACTCACCCCGAAAACCCTTACTCTCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAGCCAATAATGCATACTCACCCCGAAAACCCTTACTCTCCAAG  693

seq1  GTTTTATAATCTTTGTTAATCCCCCAGCTCCCCAATAAAGAGAGCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAATCTTTGTTAATCCCCCAGCTCCCCAATAAAGAGAGCTTTTT  743

seq1  CACTTAAAACCCTGTCTGGAGAAGGCTGTTTCTCTGAGACTCATGCTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAACCCTGTCTGGAGAAGGCTGTTTCTCTGAGACTCATGCTGAC  793

seq1  TGAGATCCTATCTAACCCACTGGCCCAGCCCGGCTAAGGTTTGTTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCTATCTAACCCACTGGCCCAGCCCGGCTAAGGTTTGTTCCTTC  843

seq1  CAGTTGAAGTTTGTTCCAGTGCGCAACAGTGCCTGGATATCCAGAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGTTTGTTCCAGTGCGCAACAGTGCCTGGATATCCAGAGGAGA  893

seq1  AAAGCAGACCTGGGCCAGCACCCCTTCTCCGTCCTAATAACACTTTACCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGACCTGGGCCAGCACCCCTTCTCCGTCCTAATAACACTTTACCG  943

seq1  ATTGCATTGTTCTCTGTACTCTCTTGTGACACAGCAGAGCCCTGGGAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTGTTCTCTGTACTCTCTTGTGACACAGCAGAGCCCTGGGAACT  993

seq1  AATAAAAACTGACTGCATGCTGAATTC  1027
      |||||||||||||||||||||||||||
seq2  AATAAAAACTGACTGCATGCTGAATTC  1020

seq1: chr9_73213591_73214656
seq2: B6Ng01-146A17.g_66_1127

seq1  GAATTCAAAGACCAAGTCATCCTGGAATGTTATTACTTCTAGTTATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACCAAGTCATCCTGGAATGTTATTACTTCTAGTTATAGGA  50

seq1  AGTAATTTAAAAGTCTCAAGAATATTAGTTATTTATAAACAAGCTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTAAAAGTCTCAAGAATATTAGTTATTTATAAACAAGCTTAAAA  100

seq1  CAGAGACACCTGGCTTCTCAAAACGAGAGTTTTGGGAGAAAGGAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACCTGGCTTCTCAAAACGAGAGTTTTGGGAGAAAGGAGGCAGA  150

seq1  ACAGCGTGGCACTGCCACATGGTGGAGAGAATGCTGGTTTATGGCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTGGCACTGCCACATGGTGGAGAGAATGCTGGTTTATGGCAAGGA  200

seq1  CATAAACCAAGATAGTCCGTAGTTGTAGATAAGCTTGCCTCCCCTAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCAAGATAGTCCGTAGTTGTAGATAAGCTTGCCTCCCCTAGTTG  250

seq1  AGACTCTAGTGAAACTTCCAAGCATTTGGTAATGAGTTACCTCATTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGTGAAACTTCCAAGCATTTGGTAATGAGTTACCTCATTGCAT  300

seq1  GGATTCCTATTTGGTTAGAATCACATAAGCCACTGAGGCTTGAGAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTATTTGGTTAGAATCACATAAGCCACTGAGGCTTGAGAGTTCC  350

seq1  TCTGACCAATCCTGGCTTGTCTTAATGTTCCTAAGTCGGGAGGTCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCAATCCTGGCTTGTCTTAATGTTCCTAAGTCGGGAGGTCTGCTA  400

seq1  TAGAAGACCTCTGTCCAAAATGAGGAGAGGGGAGATGGGCTGTGAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACCTCTGTCCAAAATGAGGAGAGGGGAGATGGGCTGTGAGGATA  450

seq1  CCCAGCCAGCTTTAGGTTTCCCTCATTTCTTAACCCCCTTTAATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCAGCTTTAGGTTTCCCTCATTTCTTAACCCCCTTTAATATTATA  500

seq1  TAACTGTAAATCTCATGCTTTAACAGAGAGAAGAATGGAGGAGGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAAATCTCATGCTTTAACAGAGAGAAGAATGGAGGAGGGAAGAG  550

seq1  AGTCTTTATCTTTGGCTCTACTCTGCTGCCCAGATGTCACAGATTGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATCTTTGGCTCTACTCTGCTGCCCAGATGTCACAGATTGTTGA  600

seq1  TTCTTTCTTCGTTCTGTTTAGGTTTTCTGGGGAAAGGGTGAAGGTGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCGTTCTGTTTAGGTTTTCTGGGGAAAGGGTGAAGGTGGTGG  650

seq1  GGCCATGATACTTAATTTGTGCACAATCTCTAGTCAGGCGGCAGGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGATACTTAATTTGTGCACAATCTCTAGTCAGGCGGCAGGAGCTC  700

seq1  ATGTAAACTTTCTTTTCCTGGGGCTTACATAGATATTATA-TTTAATGGA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGTAAACTTTCTTTTCCTGGGGCTTACATAGATATTATATTTTAATGGA  750

seq1  AACAAAAGCATTACATAAGAGTTCAGGAATGTTTAATGACTTCCTTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCATTACATAAGAGTTCAGGAATGTTTAATGACTTCCTTAAAT  800

seq1  TTAATATATATCAAATAAATGTGTAAGATTTGAGCTTAGAAAACTGTCTT  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAATATATATCAAATAAATGTGTAAGA-TTGAGCTTAGAAAACTGTCTT  849

seq1  ACAGTTCGTCAACCTAGAATTCTGTGTTAGAGGGGAGA-CCTTTGGGTTT  898
      ||||||||||||||||||| ||||||||||| |||||| | |||||||| 
seq2  ACAGTTCGTCAACCTAGAA-TCTGTGTTAGA-GGGAGATCTTTTGGGTTA  897

seq1  AGAATCGGGCACAGAATGTAGCGCCAACAGCA-CATTGCAGAGGCTTCAC  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAATCGGGCACAGAATGTAGCGCCAACAGCACCATTGCAGAGGCTTCAC  947

seq1  G-TTTTGTTTCTGATGCTTTTATGTCTCCAAAGAGCTA-CAATAGGTCAT  995
      | |||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  GTTTTTGTTTCTGATGCTTTTATGTCTCAAAAGAGCTACCAATAGGTCAT  997

seq1  ATTCCTGGGGTTTCCTTGTAAAAGTACTTTGTCCATGGAATCAAGATAAA  1045
      |||| |||||  ||||||  | || || |||| ||| | |||||||||||
seq2  ATTCTTGGGG-ATCCTTGATAGAG-AC-TTGT-CAT-GTATCAAGATAAA  1042

seq1  TGTTTAAAATTCACTTCCAAA  1066
      ||  ||||||||   ||||||
seq2  TG-CTAAAATTCCAGTCCAAA  1062