BAC Information

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BAC

Clone NameB6Ng01-146N13
Chromosome9 (Build37)
Map Location 60,337,730 - 60,472,667
singlet/doubletdoublet
Overlap geneThsd4, LOC100039792, EG384942, Lrrc49
Upstream gene4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLarp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146N13.bB6Ng01-146N13.g
ACCDH943883DH943884
length1,0051,082
definitionDH943883|Mus musculus domesticus DNA, BAC clone: B6Ng01-146N13, 5' end.DH943884|Mus musculus domesticus DNA, BAC clone: B6Ng01-146N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,337,730 - 60,338,749)(60,471,578 - 60,472,667)
sequence
gaattccagtgttttaaactaatctatgtatttcccctattctcttatgc
agagtgctctgcccttaagggacttatcttcattatccagcatcatcatg
tgagtgtcattcacgcacacaaagtctccaggcttctggcgagagacaga
ggctcagacttgtcactgcctccttccttctctcagttgagacattcact
atacaattgtgtcctcttaatttgtctcccatcaggtgcccctgcctgag
aaatctgaggatgaccctgtatttacgattcttctgcctccaccatctga
gtgcagggcaaactgggaaactcagtttcaaacaattgaggggaaagaag
aacagggaaatgcaatcaagctgcagccagaccaaatccaacagactgtg
gggaaaggccagcgtggtctgtgagaagcacattttatggcatggactta
gacacctctctaactgcatgtgggttttattgagtatttacaggtttcca
gggcttgcagccattcgcgttcgctgggaatgcaaggtgctctatcacac
cacagcttttggagacgcagaacccttgggtgagctcctctctgtctctc
caacttatggtgtctccctgaagccagcagaaagatcagttcaaggcaat
tgagggaaggcaaaaacagggggcagaatgaagaggtggaggggaaaaaa
aaaacagggaggaaataataatgaaatgctaaacgaggggctggggtgtg
gctcagtggtagcatatggaccatcatgcttgaagccccgggtccatccc
cagcaccacaggtacagcccagtggtctggttctgtagtacctgcacaca
gatggtgtaggcaggaggatcaaaagcacagggtcctccaccgctgcaca
gtacatgtgaggtcagcctgcgcacatgacgtgacacctgtgtcaaagag
aatcagaggagaagagcaggagtggagagagaaagaagagaggaaagggg
aagag
gaattcctcagagttttttaggagttgtattgtgattattcccatcttca
aaaaaaaatcaaaataccagtgtgtagttttctagatatcaaaagatgat
ttcgacctcccctatgtaagggccaatacctagaatctggcatatactga
agggcagggcttgaggatccacaccagcctgttaaggactgttctgtaca
gagagcagaggtgactgggaacctgtggtttcattacccacacagtttat
ttggggagtcctgtgccttcattcacagtgtttgatgcgggagaaaggga
cgctcctgacagatggggcacagtgaccgcacagggggtttccatgtcac
ttagaacctaataactataatctaggtgctggtgttggcgttaggaagcc
tttgtagatagaaagtccaattaagccgaggcatatttttccatgacatg
ttcttgtgaagggagatttgaccaggacaggcaagatccatgatggccca
cagggtccctgcacactcacaagtggaattgatgctgggagtgagacatg
ggacaggtgacagaggcagccctgccgtaggctgggtcttcagtgtctgt
gggagtgtggactcacacatatttggagtctagttgttgaagacagttag
ttacttatgtatgacctaattaggtacattagcgtcacatttccatggaa
agaaagactacatattcttgtcagagacacatgccattcacagagtgaac
tatgatgtgtttagaatcattacaaagctgcattacagagacttaccctg
aagtcatagcatttgaggcagtgggacagtggtaaaagtgtacacacatt
tattcagttgaaaccaggaacatgtcggaatacacacacagatacaacca
gatggacttcaccaagaaagcaggcatgtcatcagtgtgtgagatgtgaa
tttggacctccatttaaattaactcaaatggttttgatcctaattgtaaa
acttctcaaaactgtaaattagaagaaactcagacagcttcaggaccaac
tgatttaaaaaaaaaacccctcgaaattatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60337730_60338749
seq2: B6Ng01-146N13.b_50_1054

seq1  GAATTCCAGTGTTTTAAACTAATCTATGTATTTCCCCTATTCTCTTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTTTTAAACTAATCTATGTATTTCCCCTATTCTCTTATGC  50

seq1  AGAGTGCTCTGCCCTTAAGGGACTTATCTTCATTATCCAGCATCATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTCTGCCCTTAAGGGACTTATCTTCATTATCCAGCATCATCATG  100

seq1  TGAGTGTCATTCACGCACACAAAGTCTCCAGGCTTCTGGCGAGAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCATTCACGCACACAAAGTCTCCAGGCTTCTGGCGAGAGACAGA  150

seq1  GGCTCAGACTTGTCACTGCCTCCTTCCTTCTCTCAGTTGAGACATTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACTTGTCACTGCCTCCTTCCTTCTCTCAGTTGAGACATTCACT  200

seq1  ATACAATTGTGTCCTCTTAATTTGTCTCCCATCAGGTGCCCCTGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTGTGTCCTCTTAATTTGTCTCCCATCAGGTGCCCCTGCCTGAG  250

seq1  AAATCTGAGGATGACCCTGTATTTACGATTCTTCTGCCTCCACCATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAGGATGACCCTGTATTTACGATTCTTCTGCCTCCACCATCTGA  300

seq1  GTGCAGGGCAAACTGGGAAACTCAGTTTCAAACAATTGAGGGGAAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGCAAACTGGGAAACTCAGTTTCAAACAATTGAGGGGAAAGAAG  350

seq1  AACAGGGAAATGCAATCAAGCTGCAGCCAGACCAAATCCAACAGACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAAATGCAATCAAGCTGCAGCCAGACCAAATCCAACAGACTGTG  400

seq1  GGGAAAGGCCAGCGTGGTCTGTGAGAAGCACATTTTATGGCATGGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGCCAGCGTGGTCTGTGAGAAGCACATTTTATGGCATGGACTTA  450

seq1  GACACCTCTCTAACTGCATGTGGGTTTTATTGAGTATTTACAGGTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTCTCTAACTGCATGTGGGTTTTATTGAGTATTTACAGGTTTCCA  500

seq1  GGGCTTGCAGCCATTCGCGTTCGCTGGGAATGCAAGGTGCTCTATCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCAGCCATTCGCGTTCGCTGGGAATGCAAGGTGCTCTATCACAC  550

seq1  CACAGCTTTTGGAGACGCAGAACCCTTGGGTGAGCTCCTCTCTGTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTTTGGAGACGCAGAACCCTTGGGTGAGCTCCTCTCTGTCTCTC  600

seq1  CAACTTATGGTGTCTCCCTGAAGCCAGCAGAAAGATCAGTTCAAGGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATGGTGTCTCCCTGAAGCCAGCAGAAAGATCAGTTCAAGGCAAT  650

seq1  TGAGGGAAGGCAAAAACAGGGGGCAGAATGAAGAGGTGGAGGGGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGGCAAAAACAGGGGGCAGAATGAAGAGGTGGAGGGGAAAAAA  700

seq1  AAAACAGGGAGGAAATAATAATGAAATGCTAAACGAGGGGCTGGGGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGAGGAAATAATAATGAAATGCTAAACGAGGGGCTGGGGTGTG  750

seq1  GCTCAGTGGTAGCATATGGACCATCATGCTTGAAGCCCCGGGTCCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTAGCATATGGACCATCATGCTTGAAGCCCCGGGTCCATCCC  800

seq1  CAGCACCACAGGTACAGCCCAGTGGTCTGGTTCTGTAGTACCTGCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACAGGTACAGCCCAGTGGTCTGGTTCTGTAGTACCTGCACACA  850

seq1  GATGGTGTAGGCAGGAGGATCAAAAGCACAGGGTCCTCCACCGCTGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTAGGCAGGAGGATCAAAAGCACAGGGTCCTCCACCGCTGCACA  900

seq1  GTACATGTGAGGTCAGCCTGCGCAACATGACGTGACACCTGTGTTCAAAG  950
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GTACATGTGAGGTCAGCCTGCGC-ACATGACGTGACACCTGTG-TCAAAG  948

seq1  AAGAAATCAAGAGGAGGAAGAGCAGGGAGGTGGAGGAGAGGAACAGAAGG  1000
      |   |||| |||||| ||||||||||   ||||| |||||  | ||||| 
seq2  A--GAATC-AGAGGA-GAAGAGCAGG--AGTGGA-GAGAG--AAAGAAG-  988

seq1  AAGAGGAAAGGGGGGAAGAG  1020
       ||||||||  |||||||||
seq2  -AGAGGAAA--GGGGAAGAG  1005

seq1: chr9_60471578_60472667
seq2: B6Ng01-146N13.g_70_1151 (reverse)

seq1  TAATAATTTCTGTGTGTTTTTTTTTTAATCCTGTTTTGGTTCCTGAAGGC  50
      ||||||||||   | |||||||||||||  | |||   | ||||||| ||
seq2  TAATAATTTCGAGGGGTTTTTTTTTTAAATCAGTT---GGTCCTGAA-GC  46

seq1  TGTCTGAGTTTTCTTCTACAATTTACAGTTTTGAG-AGTTTTACATTTAG  99
      |||||||| ||||||||  |||||||||||||||| ||||||||| ||||
seq2  TGTCTGAG-TTTCTTCT--AATTTACAGTTTTGAGAAGTTTTACAATTAG  93

seq1  GATCACAACCCATTTTGAGTTAATTTAATGGGAGGTCCAAATTCACATCT  149
      ||||| ||||   |||||||||||||||  ||||||||||||||||||||
seq2  GATCAAAACC--ATTTGAGTTAATTTAAATGGAGGTCCAAATTCACATCT  141

seq1  CCACACACTGATGACCTGCCTGCTTTCTTGGTTGAAGTCCATCTGGTTGT  199
       |||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  -CACACACTGATGACATGCCTGCTTTCTTGG-TGAAGTCCATCTGGTTGT  189

seq1  ATCTGTGTGTGTATTCCGACATGTTCTTGG-TTCCACTG-ATAAATGTGT  247
      |||||||||||||||||||||||||| ||| ||| |||| ||||||||||
seq2  ATCTGTGTGTGTATTCCGACATGTTCCTGGTTTCAACTGAATAAATGTGT  239

seq1  GTACACTTTTACCACTGTCCCACTGCCTCAAATGCTATGACTTCAGGGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTTTACCACTGTCCCACTGCCTCAAATGCTATGACTTCAGGGTA  289

seq1  AGTCTCTGTAATGCAGCTTTGTAATGATTCTAAACACATCATAGTTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGTAATGCAGCTTTGTAATGATTCTAAACACATCATAGTTCACT  339

seq1  CTGTGAATGGCATGTGTCTCTGACAAGAATATGTAGTCTTTCTTTCCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGGCATGTGTCTCTGACAAGAATATGTAGTCTTTCTTTCCATG  389

seq1  GAAATGTGACGCTAATGTACCTAATTAGGTCATACATAAGTAACTAACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGACGCTAATGTACCTAATTAGGTCATACATAAGTAACTAACTG  439

seq1  TCTTCAACAACTAGACTCCAAATATGTGTGAGTCCACACTCCCACAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACAACTAGACTCCAAATATGTGTGAGTCCACACTCCCACAGACA  489

seq1  CTGAAGACCCAGCCTACGGCAGGGCTGCCTCTGTCACCTGTCCCATGTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACCCAGCCTACGGCAGGGCTGCCTCTGTCACCTGTCCCATGTCT  539

seq1  CACTCCCAGCATCAATTCCACTTGTGAGTGTGCAGGGACCCTGTGGGCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAGCATCAATTCCACTTGTGAGTGTGCAGGGACCCTGTGGGCCA  589

seq1  TCATGGATCTTGCCTGTCCTGGTCAAATCTCCCTTCACAAGAACATGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATCTTGCCTGTCCTGGTCAAATCTCCCTTCACAAGAACATGTCA  639

seq1  TGGAAAAATATGCCTCGGCTTAATTGGACTTTCTATCTACAAAGGCTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATATGCCTCGGCTTAATTGGACTTTCTATCTACAAAGGCTTCC  689

seq1  TAACGCCAACACCAGCACCTAGATTATAGTTATTAGGTTCTAAGTGACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCCAACACCAGCACCTAGATTATAGTTATTAGGTTCTAAGTGACAT  739

seq1  GGAAACCCCCTGTGCGGTCACTGTGCCCCATCTGTCAGGAGCGTCCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCCCTGTGCGGTCACTGTGCCCCATCTGTCAGGAGCGTCCCTTT  789

seq1  CTCCCGCATCAAACACTGTGAATGAAGGCACAGGACTCCCCAAATAAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGCATCAAACACTGTGAATGAAGGCACAGGACTCCCCAAATAAACT  839

seq1  GTGTGGGTAATGAAACCACAGGTTCCCAGTCACCTCTGCTCTCTGTACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTAATGAAACCACAGGTTCCCAGTCACCTCTGCTCTCTGTACAG  889

seq1  AACAGTCCTTAACAGGCTGGTGTGGATCCTCAAGCCCTGCCCTTCAGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCTTAACAGGCTGGTGTGGATCCTCAAGCCCTGCCCTTCAGTAT  939

seq1  ATGCCAGATTCTAGGTATTGGCCCTTACATAGGGGAGGTCGAAATCATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGATTCTAGGTATTGGCCCTTACATAGGGGAGGTCGAAATCATCT  989

seq1  TTTGATATCTAGAAAACTACACACTGGTATTTTGATTTTTTTTTGAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATCTAGAAAACTACACACTGGTATTTTGATTTTTTTTTGAAGAT  1039

seq1  GGGAATAATCACAATACAACTCCTAAAAAACTCTGAGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAATCACAATACAACTCCTAAAAAACTCTGAGGAATTC  1082