BAC Information

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BAC

Clone NameB6Ng01-146O03
Chromosome9 (Build37)
Map Location 118,012,661 - 118,123,035
singlet/doubletdoublet
Overlap gene2010110K16Rik
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O03.bB6Ng01-146O03.g
ACCDH943911DH943912
length1,1911,103
definitionDH943911|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O03, 5' end.DH943912|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,012,661 - 118,013,862)(118,121,939 - 118,123,035)
sequence
gaattcttagaatttagaaacttaaaatgcttcatttagaaatctgacaa
atcttggcaaatcaagtctttagagaagataaagaacaatgcacgcctag
gatagctatgaaaatcaaagaccacatcgcaggcagtgctatcttgtagc
taatgcatgagcataagcccaaaactttccatctgagaaaagaacaaaca
ccactgcctgccactactaatcaacaaaatctagctttaaaagaatgcac
agggccaaaatttaaaaacatgttatcaatgtccagcattctgctgaagg
ttgatctttccataacgagtaaagccaagcttggaggtgcatgcctgcaa
tctgagcacttgggaagctgagtcacaaggagtgtggttcaagtcctccc
tgggctacacagcaagactgtttttaaaaccaattctatttgtttttttg
tttttttaattaaatagagagaagaagattggataaaagaagggagaatc
catatgcttttgatttctgttaagactccaccttctgctttttttaaaca
gtactctgagtcagctctcacacataacctttcccacgcctcactgcagc
tcaggcctggcggccccagagacagcatgcccgcccgcccgcaatgcctt
gcagcctagaatctgccagtctgaaatggtgtttatcctgcttccctaca
cttacctaaatcactagaaatattttattcagaccctgcttacgccagaa
ctgctctggcttttatttcccttaaactaatatctaagaatactacgaat
acatttcatgtggtatagatctagttaggtatcaggcttttttagttagt
attttacttttatggcatttcccatatatggtaggcattaaagaaaatgt
ctacaactggtagacattcagaattttttttttaattctattaaacttag
tcttgggcactgagagatgcctcagtcagtgaagtgtgtgctacaaacta
tgaggagcagagtttaatcctcagcacccgtgagaagcctgaaaaagagt
gcccccttggggaggaggaaacagcatgagttctgggctcatggccagac
agctcacttaatcaatgacttccaggttcaaggagagatctgtcaggaca
acatgtgcatgctaagacgtgttaccacacaacacacacac
gaattcaacatttacttccaagcattttgaaagttattttgcttatctag
gtaattgtatggaggatagaggataaccttgggtcatcctcaaatgatct
ccatgttggtttactggaacccagtctttcaccaagttggctgaactggc
tgtccagtaagccctaggatctgcctgtctgtctccccaacactgctatt
agaaacatacgcgccttccctttccatgtgggtgctggggattgaattcc
gggcctcacgcctgcctggcaggcactttccagtctaatcatgcatcttt
attttgtttgtttctgtctctttccctgatagccctaatcgaccgtgtgt
ataacagctctaacattctaaacaaacaataaatgctttgggaattcacc
aagaaacgctggattgttccctggactaagtgatgacatttagtttgctc
acctgcaaagagctacgactgacttcagaaatggcatcgtgccctgggtt
ctgttctggtcattccacaccctccaggccagagctgtgaacgtatgcgt
tctgtcagccttctcctcgagttcctcctaacctggcctgagtctcagag
ctcttttgtctggggcaagagcaaggctaagtctggaccgtttactgtac
ttttctgcaggcaataaagcctcggttctttctatcagtactgtccaaag
ggcaaatataaagtgatggctaggggaggggcactgtctgggcaggaagg
caaggaggcagcctctgacagctgttcacactttcccacacagctgggag
acactggccaagtctcccagcccaccggtgccttgtctggcacactgctc
agttagccctcctcccatcctcaagctaaaacagttggctatcattacac
atcaggggctgaaccaccccaagtcccttgaacagtcctgctgaggggca
tgtctctccaggtcaggagttcaacagaggttagagaagaaagttaaacg
gtgggcagaaggcaaggaggggaaaaaaagaaatattaatagaatgattt
cagaaggtcatttcctggtgtggtgtgttctgggccaagaaaagtaagca
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118012661_118013862
seq2: B6Ng01-146O03.b_44_1234

seq1  GAATTCTTAGAATTTAGAAACTTAAAATGCTTCATTTAGAAATCTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATTTAGAAACTTAAAATGCTTCATTTAGAAATCTGACAA  50

seq1  ATCTTGGCAAATCAAGTCTTTAGAGAAGATAAAGAACAATGCACGCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCAAATCAAGTCTTTAGAGAAGATAAAGAACAATGCACGCCTAG  100

seq1  GATAGCTATGAAAATCAAAGACCACATCGCAGGCAGTGCTATCTTGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTATGAAAATCAAAGACCACATCGCAGGCAGTGCTATCTTGTAGC  150

seq1  TAATGCATGAGCATAAGCCCAAAACTTTCCATCTGAGAAAAGAACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATGAGCATAAGCCCAAAACTTTCCATCTGAGAAAAGAACAAACA  200

seq1  CCACTGCCTGCCACTACTAATCAACAAAATCTAGCTTTAAAAGAATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTGCCACTACTAATCAACAAAATCTAGCTTTAAAAGAATGCAC  250

seq1  AGGGCCAAAATTTAAAAACATGTTATCAATGTCCAGCATTCTGCTGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAAATTTAAAAACATGTTATCAATGTCCAGCATTCTGCTGAAGG  300

seq1  TTGATCTTTCCATAACGAGTAAAGCCAAGCTTGGAGGTGCATGCCTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTCCATAACGAGTAAAGCCAAGCTTGGAGGTGCATGCCTGCAA  350

seq1  TCTGAGCACTTGGGAAGCTGAGTCACAAGGAGTGTGGTTCAAGTCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCACTTGGGAAGCTGAGTCACAAGGAGTGTGGTTCAAGTCCTCCC  400

seq1  TGGGCTACACAGCAAGACTGTTTTTAAAACCAATTCTATTTGTTTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTACACAGCAAGACTGTTTTTAAAACCAATTCTATTTGTTTTTTTG  450

seq1  TTTTTTTAATTAAATAGAGAGAAGAAGATTGGATAAAAGAAGGGAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTAAATAGAGAGAAGAAGATTGGATAAAAGAAGGGAGAATC  500

seq1  CATATGCTTTTGATTTCTGTTAAGACTCCACCTTCTGCTTTTTTTAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTTTTGATTTCTGTTAAGACTCCACCTTCTGCTTTTTTTAAACA  550

seq1  GTACTCTGAGTCAGCTCTCACACATAACCTTTCCCACGCCTCACTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGAGTCAGCTCTCACACATAACCTTTCCCACGCCTCACTGCAGC  600

seq1  TCAGGCCTGGCGGCCCCAGAGACAGCATGCCCGCCCGCCCGCAATGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGGCGGCCCCAGAGACAGCATGCCCGCCCGCCCGCAATGCCTT  650

seq1  GCAGCCTAGAATCTGCCAGTCTGAAATGGTGTTTATCCTGCTTCCCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGAATCTGCCAGTCTGAAATGGTGTTTATCCTGCTTCCCTACA  700

seq1  CTTACCTAAATCACTAGAAATATTTTATTCAGACCCTGCTTACGCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAATCACTAGAAATATTTTATTCAGACCCTGCTTACGCCAGAA  750

seq1  CTGCTCTGGCTTTTATTTCCCTTAAACTAATATCTAAGAATACTACGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGCTTTTATTTCCCTTAAACTAATATCTAAGAATACTACGAAT  800

seq1  ACATTTCATGTGGTATAGATCTAGTTAGGTATCAGGCTTTTTTAGTTAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACATTTCATGTGGTATAGATCTAGTTAGGTATCAGGCTTTTTTAGTTA-G  849

seq1  TATTTTACTTTTATGGCATTTCCCATATATGGTAGGCATTAAAGAAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTTTTATGGCATTTCCCATATATGGTAGGCATTAAAGAAAATG  899

seq1  TCTACAACTGGTAGACATTCAAGAATTTTTTTTTTTAATTCTATTAAACT  950
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TCTACAACTGGTAGACATTC-AGAA-TTTTTTTTTTAATTCTATTAAACT  947

seq1  TAGTCTTGGGCACTGAGAGATGCCTCAGTCAGTGAAGTGTGTGCTACATA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGTCTTGGGCACTGAGAGATGCCTCAGTCAGTGAAGTGTGTGCTACA-A  996

seq1  CCTATGAGGAGCAGAGTTTAATCCTCAGCACCCGTGAGAAAGCCTGACAA  1050
       ||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ACTATGAGGAGCAGAGTTTAATCCTCAGCACCCGTGAG-AAGCCTGAAAA  1045

seq1  AGAAGTGCGCTC-TGGGGAGGAGGAGACAGCATGAGTCCTGGGCTCACTG  1099
      || ||||| | | |||||||||||| ||||||||||| ||||||||| ||
seq2  AG-AGTGCCCCCTTGGGGAGGAGGAAACAGCATGAGTTCTGGGCTCA-TG  1093

seq1  GCCAGACAGCTCATCTAAATCAATGAACTTCAGGTTCAATGAGAGATCCT  1149
      ||||||||||||| || |||||||||  | ||||||||| ||||||||  
seq2  GCCAGACAGCTCA-CTTAATCAATGACTTCCAGGTTCAAGGAGAGATC--  1140

seq1  GTCTCAAGACAACATGTGCATGCCTAAGCACGTGTACACACAC-ACACAC  1198
       | ||| ||||||||||||||| ||||| ||||||   ||||| ||||||
seq2  -TGTCAGGACAACATGTGCATG-CTAAG-ACGTGTTACCACACAACACAC  1187

seq1  ACAC  1202
      ||||
seq2  ACAC  1191

seq1: chr9_118121939_118123035
seq2: B6Ng01-146O03.g_67_1169 (reverse)

seq1  TTTTGCTTAC-TTTCTTGG-CCAGAACACA-CACACCA-GAAATGGCC-T  45
      |||||||||| |||||||| |||||||||| ||||||| |||||| || |
seq2  TTTTGCTTACTTTTCTTGGCCCAGAACACACCACACCAGGAAATGACCTT  50

seq1  CTGAAATCA-TCTATTAATATTTC-TTCTCTCCCCTCCTTGCCTTCTGCC  93
      ||||||||| |||||||||||||| || | ||||||||||||||||||||
seq2  CTGAAATCATTCTATTAATATTTCTTTTTTTCCCCTCCTTGCCTTCTGCC  100

seq1  CACCGTTTAACTGTCTCTGCTAACCTCTGTTGAACTCCTGACCTGGAGAA  143
      |||||||||||| |||   ||||||||||||||||||||||||||||| |
seq2  CACCGTTTAACTTTCTTCTCTAACCTCTGTTGAACTCCTGACCTGGAG-A  149

seq1  GACATGCCCCTCAGCAGGACTGTTCAAGGGACTTGGGGTGGTTCAGCCCC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCCCCTCAGCAGGACTGTTCAAGGGACTTGGGGTGGTTCAGCCCC  199

seq1  TGATGTGTAATGATAGCCAACTGTTTTAGCTTGAGGATGGGAGGAGGGCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTAATGATAGCCAACTGTTTTAGCTTGAGGATGGGAGGAGGGCT  249

seq1  AACTGAGCAGTGTGCCAGACAAGGCACCGGTGGGCTGGGAGACTTGGCCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCAGTGTGCCAGACAAGGCACCGGTGGGCTGGGAGACTTGGCCA  299

seq1  GTGTCTCCCAGCTGTGTGGGAAAGTGTGAACAGCTGTCAGAGGCTGCCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCCAGCTGTGTGGGAAAGTGTGAACAGCTGTCAGAGGCTGCCTC  349

seq1  CTTGCCTTCCTGCCCAGACAGTGCCCCTCCCCTAGCCATCACTTTATATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCTGCCCAGACAGTGCCCCTCCCCTAGCCATCACTTTATATT  399

seq1  TGCCCTTTGGACAGTACTGATAGAAAGAACCGAGGCTTTATTGCCTGCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTGGACAGTACTGATAGAAAGAACCGAGGCTTTATTGCCTGCAG  449

seq1  AAAAGTACAGTAAACGGTCCAGACTTAGCCTTGCTCTTGCCCCAGACAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACAGTAAACGGTCCAGACTTAGCCTTGCTCTTGCCCCAGACAAA  499

seq1  AGAGCTCTGAGACTCAGGCCAGGTTAGGAGGAACTCGAGGAGAAGGCTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTGAGACTCAGGCCAGGTTAGGAGGAACTCGAGGAGAAGGCTGA  549

seq1  CAGAACGCATACGTTCACAGCTCTGGCCTGGAGGGTGTGGAATGACCAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGCATACGTTCACAGCTCTGGCCTGGAGGGTGTGGAATGACCAGA  599

seq1  ACAGAACCCAGGGCACGATGCCATTTCTGAAGTCAGTCGTAGCTCTTTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCCAGGGCACGATGCCATTTCTGAAGTCAGTCGTAGCTCTTTGC  649

seq1  AGGTGAGCAAACTAAATGTCATCACTTAGTCCAGGGAACAATCCAGCGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCAAACTAAATGTCATCACTTAGTCCAGGGAACAATCCAGCGTT  699

seq1  TCTTGGTGAATTCCCAAAGCATTTATTGTTTGTTTAGAATGTTAGAGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGAATTCCCAAAGCATTTATTGTTTGTTTAGAATGTTAGAGCTG  749

seq1  TTATACACACGGTCGATTAGGGCTATCAGGGAAAGAGACAGAAACAAACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACACGGTCGATTAGGGCTATCAGGGAAAGAGACAGAAACAAACA  799

seq1  AAATAAAGATGCATGATTAGACTGGAAAGTGCCTGCCAGGCAGGCGTGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGATGCATGATTAGACTGGAAAGTGCCTGCCAGGCAGGCGTGAG  849

seq1  GCCCGGAATTCAATCCCCAGCACCCACATGGAAAGGGAAGGCGCGTATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGAATTCAATCCCCAGCACCCACATGGAAAGGGAAGGCGCGTATGT  899

seq1  TTCTAATAGCAGTGTTGGGGAGACAGACAGGCAGATCCTAGGGCTTACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAGCAGTGTTGGGGAGACAGACAGGCAGATCCTAGGGCTTACTG  949

seq1  GACAGCCAGTTCAGCCAACTTGGTGAAAGACTGGGTTCCAGTAAACCAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGTTCAGCCAACTTGGTGAAAGACTGGGTTCCAGTAAACCAAC  999

seq1  ATGGAGATCATTTGAGGATGACCCAAGGTTATCCTCTATCCTCCATACAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATCATTTGAGGATGACCCAAGGTTATCCTCTATCCTCCATACAA  1049

seq1  TTACCTAGATAAGCAAAATAACTTTCAAAATGCTTGGAAGTAAATGTTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGATAAGCAAAATAACTTTCAAAATGCTTGGAAGTAAATGTTGA  1099

seq1  ATTC  1097
      ||||
seq2  ATTC  1103