BAC Information

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BAC

Clone NameB6Ng01-147E23
Chromosome9 (Build37)
Map Location 58,581,629 - 58,704,274
singlet/doubletdoublet
Overlap gene2410076I21Rik, Hcn4
Upstream geneEdc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn
Downstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147E23.bB6Ng01-147E23.g
ACCDH944227DH944228
length1,127232
definitionDH944227|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E23, 5' end.DH944228|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,581,629 - 58,582,759)(58,704,043 - 58,704,274)
sequence
gaattccagccaagaactcagagataagtcttccgattcggaagtgtgtg
acaaactgccagctaaccccagacattcatttttccttttacatagaaat
aggccatatgaccttgcggtatacagcagtcttccatgtgggtttaagct
ctgcctagtgtattgtcaggtaaagcatcacacggtggcttacagaaatt
cccttaggaaactacacatgtacactctgtccagttcacccttcctcagg
ctcctagaaccctggttctttctcagatttatcacagtgtcttagtttct
tttcctgttgctgtgataaaacaccttgaggcaaaagcaacttaatgaag
aactgttgattgcagctcatggtttacgggcccatcacggcagggaaatc
actcagcttgtggtagttggtcacactacatccacagtcagggtgctgag
aactgtgaatgtaaaccaagctcagtgaatggtactgctcacgtttagag
tgggccttctcacttcaattaacctcaggaaaaaacccttcccagggaca
cccagaggctaacctaatctagataacccctcacgagtgtgtccagaggc
ttatctcaaggacaattctagaccctgtgaagctggcaatattaacggtc
accacagccatgcagggcagaagaacaaaatgaaggaagcctctattcct
gacactgagcgtcaccccagctctggacttacggtgaaaattaagttttc
atctttctgtcactcagagctaatattaatcttaagatgtaacctgactt
taagaaaatgggaggattcttgagagaagaataactacttttttttttaa
gattttaaaatcctatattaggagccagataaagctctctctgaggggct
ctgccagagcctgacaaatacagaagtggacgctcacagccatccactgg
actgtgcatagggtccccattgaaggagacagagaaaggggtttgcagtc
ccatagaggacaacaatatgaactagccagtaccccagagctcccaggga
ctaaccaccaaccaaagacaaatggtgggacctcatgctccagccactat
tgcatcaatgagaggaaagccctttgt
tctcccactttctcttcctgcctcctcaaagcaagcaagctttcctgctt
tcccctcccttccccctcaccgcccccccccccccgcatttgacagtatc
atcaaacttggctgatagctcctggttaaggtctgagctcctagggtttg
tcagtaaaatgggcagagtggaggtttggtgtgacaggggagtagggggg
ctactctgatgttatacatgatggggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58581629_58582759
seq2: B6Ng01-147E23.b_46_1172

seq1  GAATTCCAGCCAAGAACTCAGAGATAAGTCTTCCGATTCGGAAGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAAGAACTCAGAGATAAGTCTTCCGATTCGGAAGTGTGTG  50

seq1  ACAAACTGCCAGCTAACCCCAGACATTCATTTTTCCTTTTACATAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGCCAGCTAACCCCAGACATTCATTTTTCCTTTTACATAGAAAT  100

seq1  AGGCCATATGACCTTGCGGTATACAGCAGTCTTCCATGTGGGTTTAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATATGACCTTGCGGTATACAGCAGTCTTCCATGTGGGTTTAAGCT  150

seq1  CTGCCTAGTGTATTGTCAGGTAAAGCATCACACGGTGGCTTACAGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGTGTATTGTCAGGTAAAGCATCACACGGTGGCTTACAGAAATT  200

seq1  CCCTTAGGAAACTACACATGTACACTCTGTCCAGTTCACCCTTCCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGGAAACTACACATGTACACTCTGTCCAGTTCACCCTTCCTCAGG  250

seq1  CTCCTAGAACCCTGGTTCTTTCTCAGATTTATCACAGTGTCTTAGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAACCCTGGTTCTTTCTCAGATTTATCACAGTGTCTTAGTTTCT  300

seq1  TTTCCTGTTGCTGTGATAAAACACCTTGAGGCAAAAGCAACTTAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTGCTGTGATAAAACACCTTGAGGCAAAAGCAACTTAATGAAG  350

seq1  AACTGTTGATTGCAGCTCATGGTTTACGGGCCCATCACGGCAGGGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGATTGCAGCTCATGGTTTACGGGCCCATCACGGCAGGGAAATC  400

seq1  ACTCAGCTTGTGGTAGTTGGTCACACTACATCCACAGTCAGGGTGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTGTGGTAGTTGGTCACACTACATCCACAGTCAGGGTGCTGAG  450

seq1  AACTGTGAATGTAAACCAAGCTCAGTGAATGGTACTGCTCACGTTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAATGTAAACCAAGCTCAGTGAATGGTACTGCTCACGTTTAGAG  500

seq1  TGGGCCTTCTCACTTCAATTAACCTCAGGAAAAAACCCTTCCCAGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTCTCACTTCAATTAACCTCAGGAAAAAACCCTTCCCAGGGACA  550

seq1  CCCAGAGGCTAACCTAATCTAGATAACCCCTCACGAGTGTGTCCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGCTAACCTAATCTAGATAACCCCTCACGAGTGTGTCCAGAGGC  600

seq1  TTATCTCAAGGACAATTCTAGACCCTGTGAAGCTGGCAATATTAACGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAAGGACAATTCTAGACCCTGTGAAGCTGGCAATATTAACGGTC  650

seq1  ACCACAGCCATGCAGGGCAGAAGAACAAAATGAAGGAAGCCTCTATTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCCATGCAGGGCAGAAGAACAAAATGAAGGAAGCCTCTATTCCT  700

seq1  GACACTGAGCGTCACCCCAGCTCTGGACTTACGGTGAAAATTAAGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGCGTCACCCCAGCTCTGGACTTACGGTGAAAATTAAGTTTTC  750

seq1  ATC-TTCTGTCACTCAGAGCTAATATTAATCTTAAGATGTAACCTGACTT  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGTCACTCAGAGCTAATATTAATCTTAAGATGTAACCTGACTT  800

seq1  TAAGAAAAT-GGAGGATTCTTGAGAGAAGAATAACTAC-TTTTTTTTTAA  847
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TAAGAAAATGGGAGGATTCTTGAGAGAAGAATAACTACTTTTTTTTTTAA  850

seq1  GATTTTAAAATCCTATATTAGGAGCCAGATAAAGCTCTCTCTGAGGGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAATCCTATATTAGGAGCCAGATAAAGCTCTCTCTGAGGGGCT  900

seq1  CTGCCAGAGCCTGACAAATACAGAAGTGGACGCTCACAGCCATCCACTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGCCTGACAAATACAGAAGTGGACGCTCACAGCCATCCACTGG  950

seq1  ACTGTGCATAGGGTCCCCAATGAAGGAGACAGAGAAAGGGGTTTGCAGTC  997
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGTGCATAGGGTCCCCATTGAAGGAGACAGAGAAAGGGGTTTGCAGTC  1000

seq1  CCATAAGAGGAACAACAATATGAACTAGCCAGTACCCCCAGAGCTCCCAG  1047
      |||| ||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CCAT-AGAGG-ACAACAATATGAACTAGCCAGTA-CCCCAGAGCTCCCAG  1047

seq1  GGACTAAACCACCAACCAAAGAGCAAAATGGTGGGA-CTCATGGCTCCAG  1096
      ||||| ||||||||||||||||   ||||||||||| ||||| |||||||
seq2  GGACT-AACCACCAACCAAAGA--CAAATGGTGGGACCTCAT-GCTCCAG  1093

seq1  CTACATATGCATCAATGAGAGGAGAGGCCCTTTGT  1131
      | ||   |||||||||||||||| | |||||||||
seq2  CCACTATTGCATCAATGAGAGGA-AAGCCCTTTGT  1127

seq1: chr9_58704043_58704274
seq2: B6Ng01-147E23.g_75_306 (reverse)

seq1  CACCCACCCCATCATGTATAACATCAGAGTAGCCCCCCTACTCCCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCATCATGTATAACATCAGAGTAGCCCCCCTACTCCCCTGTC  50

seq1  ACACCAAACCTCCACTCTGCCCATTTTACTGACAAACCCTAGGAGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAACCTCCACTCTGCCCATTTTACTGACAAACCCTAGGAGCTCAG  100

seq1  ACCTTAACCAGGAGCTATCAGCCAAGTTTGATGATACTGTCAAATGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACCAGGAGCTATCAGCCAAGTTTGATGATACTGTCAAATGCGGG  150

seq1  GGGGGGGGGGCGGTGAGGGGGAAGGGAGGGGAAAGCAGGAAAGCTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGCGGTGAGGGGGAAGGGAGGGGAAAGCAGGAAAGCTTGCTT  200

seq1  GCTTTGAGGAGGCAGGAAGAGAAAGTGGGAGA  232
      ||||||||||||||||||||||||||||||||
seq2  GCTTTGAGGAGGCAGGAAGAGAAAGTGGGAGA  232