BAC Information

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BAC

Clone NameB6Ng01-147J03
Chromosome9 (Build37)
Map Location 119,297,976 - 119,462,297
singlet/doubletdoublet
Overlap geneXylb, Acvr2b, Endogl1, Scn5a
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a
Downstream geneScn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J03.bB6Ng01-147J03.g
ACCDH944415DH944416
length9261,138
definitionDH944415|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J03, 5' end.DH944416|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,461,379 - 119,462,297)(119,297,976 - 119,299,131)
sequence
gaattcagccaggttcctggggcaccccagtctctaggaggcccagggtc
tgatccctcctccttcatcttacagacgccaagggaagagcgaagggagt
cagtcagagctttgtccagcctggagcaacagttaagacgcagccagcgt
tggggatggtggtttaggtagtacctgggttcccacaaagataccaggac
acaatggtggtgtttgcccctttctggcaagcaggcagatgggctgacac
tcattgaggatccacaggctaaaagggggatggctggcctctgggggtgt
ggtgctacaacagccaatgagctgaggtggtccttcctgatgagagattt
taaaaagcaaggagcccagggtgtgggactggggtgagagacgggtgtag
aggccggaagcatactggaaatgcccccctccaacatggcagctcacctc
caggtgtgctttgaagctaaagcctgggtaagggaacttcggaccctgcc
gatcttcctggccggctccaaactgaagcttgactccctcccatgtgact
gtgagcaggagtcaaccctaaggaccggggtgtctctccactccacactg
tggaagatgtggtctccagtttgtctggtgcctgctaagctatggaacag
gccaggctccggcagcaagtgcctggaggacaaagagagcagacccctgg
gtagggaggccttgggcgctaaggccttgcagcaccggggagtgttttca
ctgatcttgcaacattttgcctggcagtgacatcaaggcccagcccctcg
gcagctattggtggctttagctaacctctcccgtggattgtgtgggccct
ttacgcagctttcctttggcctctctgtggatttgtagatgggacctcta
ttggcttcctgcagccccttctgtgg
gaattccctgttgaaggacaccacagtctcaggactgttagcatcatttt
tatcccagcaagaatgagcccctgtcttatgtgctctaaagtggagaaag
ggaggcaggattcaaatgagatgaggtctgtccaagtcaaactctaaaga
caaaccaaaaaagccacagggcatgcttgcgggcagcctagttgtaggtt
tgtacagtcaggggagatgaagacagtggatggagtcccgaatagcaaga
aattgagacagtggtgaaagcctcggaaccaagaagtccagaaccatgga
cagctccgcagaggccctgactctgggctgtctccctggaactgcagaca
ttactcgaagacaaagacagttagttaggggttaaggctagtctctcagt
tagttaggggttaaggctagcctctcagttagttaggggttaaggctagt
ctctcagttagttagggttaaggctagtctcagttagttaggggttaagg
ctagtctctcagttagttaggggttaaggctagtctctcagttagttagg
ggttaaggctagtctcagttaagctgcttcaccctgtgacctgtccctag
ggaatccctggctgtcagctgcatcagggactccaccctttcaccccggg
ggttcattctttccctgtgaactcactcctcagcacacctacttagactt
gatatttctttcaacatggaaagtgaagggtggagctctatcctctttat
gaatctttaccttcattcttgtttctcctccaacttctgcaacttcatgt
agcaagatcattggggaatttgcttccaaatttttacttcttaccccaat
gctgggaactgaacccagggccttgtgttggtctgtgcttggtagactgt
cgcaagcctctctctctctctctctctctctctctttaatatactttttg
tttgagatgaggttcaccagttgtccaggttgacttagtaactcagtgct
tggattccaggtgagccttgactcccattctcgatatgtttaccacaaca
cacaccagatccccattttaggatattttttataaggcattggcacatga
ctttttttttttcaagtccaggactcctttctagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119461379_119462297
seq2: B6Ng01-147J03.b_49_974 (reverse)

seq1  CCACAGAAGGGGCTGCAGGAAGCC-ATAGAGGTCCCATCTACAAATCCAC  49
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACAGAAGGGGCTGCAGGAAGCCAATAGAGGTCCCATCTACAAATCCAC  50

seq1  AGAGAGGCCAAA-GAAAGCTGCGTAAGGGGCCACACA-AATCCACGGGAG  97
      |||||||||||| ||||||||||||| ||||| |||| ||||||||||| 
seq2  AGAGAGGCCAAAGGAAAGCTGCGTAAAGGGCC-CACACAATCCACGGGA-  98

seq1  GAGGTTAGCT-AAGCCACC-ATAGCTGCCGAGGGGCTGGGCC-TGATGTC  144
      |||||||||| |||||||| |||||||||||||||||||||| |||||||
seq2  GAGGTTAGCTAAAGCCACCAATAGCTGCCGAGGGGCTGGGCCTTGATGTC  148

seq1  ACTGCCAGGC-AAATGTTGCAAGATCAGTGAAGACACT-CCCGGTGCTGC  192
      |||||||||| ||||||||||||||||||||| ||||| |||||||||||
seq2  ACTGCCAGGCAAAATGTTGCAAGATCAGTGAAAACACTCCCCGGTGCTGC  198

seq1  AAGGCCTTAGCG-CCAAGGCCTCCCTACCCAGGGGTCTGCTCTCTTTGTC  241
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTAGCGCCCAAGGCCTCCCTACCCAGGGGTCTGCTCTCTTTGTC  248

seq1  CTCCAGGCACTTGCTGCCGGAGCCTGGCCTGTTCCATAGCTTAGCAGGCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCACTTGCTGCCGGAGCCTGGCCTGTTCCATAGCTTAGCAGGCA  298

seq1  CCAGACAAACTGGAGACCACATCTTCCACAGTGTGGAGTGGAGAGACACC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAACTGGAGACCACATCTTCCACAGTGTGGAGTGGAGAGACACC  348

seq1  CCGGTCCTTAGGGTTGACTCCTGCTCACAGTCACATGGGAGGGAGTCAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCTTAGGGTTGACTCCTGCTCACAGTCACATGGGAGGGAGTCAAG  398

seq1  CTTCAGTTTGGAGCCGGCCAGGAAGATCGGCAGGGTCCGAAGTTCCCTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTGGAGCCGGCCAGGAAGATCGGCAGGGTCCGAAGTTCCCTTA  448

seq1  CCCAGGCTTTAGCTTCAAAGCACACCTGGAGGTGAGCTGCCATGTTGGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTTAGCTTCAAAGCACACCTGGAGGTGAGCTGCCATGTTGGAG  498

seq1  GGGGGCATTTCCAGTATGCTTCCGGCCTCTACACCCGTCTCTCACCCCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATTTCCAGTATGCTTCCGGCCTCTACACCCGTCTCTCACCCCAG  548

seq1  TCCCACACCCTGGGCTCCTTGCTTTTTAAAATCTCTCATCAGGAAGGACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCCTGGGCTCCTTGCTTTTTAAAATCTCTCATCAGGAAGGACC  598

seq1  ACCTCAGCTCATTGGCTGTTGTAGCACCACACCCCCAGAGGCCAGCCATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCTCATTGGCTGTTGTAGCACCACACCCCCAGAGGCCAGCCATC  648

seq1  CCCCTTTTAGCCTGTGGATCCTCAATGAGTGTCAGCCCATCTGCCTGCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTAGCCTGTGGATCCTCAATGAGTGTCAGCCCATCTGCCTGCTT  698

seq1  GCCAGAAAGGGGCAAACACCACCATTGTGTCCTGGTATCTTTGTGGGAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGGGGCAAACACCACCATTGTGTCCTGGTATCTTTGTGGGAAC  748

seq1  CCAGGTACTACCTAAACCACCATCCCCAACGCTGGCTGCGTCTTAACTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACTACCTAAACCACCATCCCCAACGCTGGCTGCGTCTTAACTGT  798

seq1  TGCTCCAGGCTGGACAAAGCTCTGACTGACTCCCTTCGCTCTTCCCTTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGCTGGACAAAGCTCTGACTGACTCCCTTCGCTCTTCCCTTGG  848

seq1  CGTCTGTAAGATGAAGGAGGAGGGATCAGACCCTGGGCCTCCTAGAGACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTAAGATGAAGGAGGAGGGATCAGACCCTGGGCCTCCTAGAGACT  898

seq1  GGGGTGCCCCAGGAACCTGGCTGAATTC  919
      ||||||||||||||||||||||||||||
seq2  GGGGTGCCCCAGGAACCTGGCTGAATTC  926

seq1: chr9_119297976_119299131
seq2: B6Ng01-147J03.g_69_1206

seq1  GAATTCCCTGTTGAAGGACACCACAGTCTCAGGACTGTTAGCATCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTGAAGGACACCACAGTCTCAGGACTGTTAGCATCATTTT  50

seq1  TATCCCAGCAAGAATGAGCCCCTGTCTTATGTGCTCTAAAGTGGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCAAGAATGAGCCCCTGTCTTATGTGCTCTAAAGTGGAGAAAG  100

seq1  GGAGGCAGGATTCAAATGAGATGAGGTCTGTCCAAGTCAAACTCTAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGATTCAAATGAGATGAGGTCTGTCCAAGTCAAACTCTAAAGA  150

seq1  CAAACCAAAAAAGCCACAGGGCATGCTTGCGGGCAGCCTAGTTGTAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAAAAGCCACAGGGCATGCTTGCGGGCAGCCTAGTTGTAGGTT  200

seq1  TGTACAGTCAGGGGAGATGAAGACAGTGGATGGAGTCCCGAATAGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCAGGGGAGATGAAGACAGTGGATGGAGTCCCGAATAGCAAGA  250

seq1  AATTGAGACAGTGGTGAAAGCCTCGGAACCAAGAAGTCCAGAACCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGACAGTGGTGAAAGCCTCGGAACCAAGAAGTCCAGAACCATGGA  300

seq1  CAGCTCCGCAGAGGCCCTGACTCTGGGCTGTCTCCCTGGAACTGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCGCAGAGGCCCTGACTCTGGGCTGTCTCCCTGGAACTGCAGACA  350

seq1  TTACTCGAAGACAAAGACAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGAAGACAAAGACAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGT  400

seq1  TAGTTAGGGGTTAAGGCTAGCCTCTCAGTTAGTTAGGGGTTAAGGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGGGTTAAGGCTAGCCTCTCAGTTAGTTAGGGGTTAAGGCTAGT  450

seq1  CTCTCAGTTAGTTAGGGTTAAGGCTAGTCTCAGTTAGTTAGGGGTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTTAGTTAGGGTTAAGGCTAGTCTCAGTTAGTTAGGGGTTAAGG  500

seq1  CTAGTCTCTCAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGTTAGTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTCAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGTTAGTTAGG  550

seq1  GGTTAAGGCTAGTCTCAGTTAAGCTGCTTCACCCTGTGACCTGTCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGCTAGTCTCAGTTAAGCTGCTTCACCCTGTGACCTGTCCCTAG  600

seq1  GGAATCCCTGGCTGTCAGCTGCATCAGGGACTCCACCCTTTCACCCCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCTGGCTGTCAGCTGCATCAGGGACTCCACCCTTTCACCCCGGG  650

seq1  GGTTCATTCTTTCCCTGTGAACTCACTCCTCAGCACACCTACTTAGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTCTTTCCCTGTGAACTCACTCCTCAGCACACCTACTTAGACTT  700

seq1  GATATTTCTTTCAACATGGAAAGTGAAGGGTGGAGCTCTATCCTCTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATATTTCTTTCAACATGGAAAGTGAAGGGTGGAGCTCTATCCTCTTTAT  750

seq1  GAATCTTTACCTTCATTCTTGTTTCTCCTCCAACTTCTGCAACTTCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTACCTTCATTCTTGTTTCTCCTCCAACTTCTGCAACTTCATGT  800

seq1  AGCAAGATCATTGGGGAATTTGCTTCCAAATTTTTACTTCTTACCCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATCATTGGGGAATTTGCTTCCAAATTTTTACTTCTTACCCCAAT  850

seq1  GCTGGGAACTGAACCCAGGGCCTTGTGTTGGTCTGTGCTTGGTAGACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAACTGAACCCAGGGCCTTGTGTTGGTCTGTGCTTGGTAGACTGT  900

seq1  CGCAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAATATACTTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAATATACTTTTTG  950

seq1  TTTTGAGATGAGGTCTCACCAAGTTGTCCAGGTTGACTTAGTAACTCAGT  1000
       ||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  -TTTGAGATGAGGT-TCACC-AGTTGTCCAGGTTGACTTAGTAACTCAGT  997

seq1  --CTGGATTCCAGGTGAGCCTTGAACTTCCCATTCTCCGATATGTATAAC  1048
         |||||||||||||||||||||   ||||||||| |||||||| | ||
seq2  GCTTGGATTCCAGGTGAGCCTTGA--CTCCCATTCT-CGATATGT-TTAC  1043

seq1  AACAACAACAACAACAAAAATCACCCCATTTTAAGTAATTTTTTATAAGC  1098
       ||||||   ||| || |     |||||||||| |  |||||||||||| 
seq2  CACAACA--CACACCAGA----TCCCCATTTTAGGATATTTTTTATAAGG  1087

seq1  AATTTTGCTATCAGTGACTTTTTTTTTTTAAAGTCACTGAGCTTCCCTTT  1148
       | || ||   || ||||||||||||||| ||||| | |  ||  |||||
seq2  CA-TTGGC--ACA-TGACTTTTTTTTTTTCAAGTC-CAGGACT--CCTTT  1130

seq1  CTAGGTGA  1156
      ||||| ||
seq2  CTAGGGGA  1138