BAC Information

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BAC

Clone NameB6Ng01-147J09
Chromosome9 (Build37)
Map Location 119,297,976 - 119,462,297
singlet/doubletdoublet
Overlap geneXylb, Acvr2b, Endogl1, Scn5a
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a
Downstream geneScn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J09.bB6Ng01-147J09.g
ACCDH944426DH944427
length719858
definitionDH944426|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J09, 5' end.DH944427|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,461,579 - 119,462,297)(119,297,976 - 119,298,837)
sequence
gaattcagccaggttcctggggcacccccttctctaggaggcccagggtc
tgatccctcctccttcatcttacagacgccaagggaagagcgaagggagt
cagtcagagctttgtccagcctggagcaacagttaagacgcagccagcgt
tggggatggtggtttaggtagtacctgggttcccacaaagataccaggac
acaatggtggtgtttgcccctttctggcaagcaggcatatgggctgacac
tcattgaggatccacaggctaaaagggggatggctggcctctgggggtgt
ggtgctacaacatccaatgagctgaggtggtccttcctgatgagagattt
taaaaagcaaggagcccagggtgtgggactggggtgagagactggtgtag
aggccggaatcatactggaaatgcccccctcctacatggcttctcacctc
caggtgtgcttcgaacctaaagcctgggtaagggaacttcggaccctgac
gatcttcctggccggctccaaaatgaagcttgactccctcccatgtgact
gtgagcaggagtcaaccctaaggaccggggtgtctctccactccacactg
tggaagatgtggtctccagttttgtctggtgcctgctaagctatggaaca
ggccatgctccggcagcaagtgcctggaggacaaagagagcagacccctg
ggtagggaggcctggcgct
gaattccctgttgaaggacaccacagtctcaggactgttagcatcatttt
tatcccagcaagaatgagcccctgtcttatgtgctctaaagtggagaaag
ggaggcaggattcaaatgagatgaggtctgtccaagtcaaactctaaaga
caaaccaaaaaagccacagggcatgcttgcgggcagcctagttgtaggtt
tgtacagtcaggggagatgaagacagtggatggagtcccgaatagcaaga
aattgagacagtggtgaaagcctcggaaccaagaagtccagaaccatgga
cagctccgcagaggccctgactctgggctgtctccctggaactgcagaca
ttactcgaagacaaagacagttagttaggggttaaggctagtctctcagt
tagttaggggttaaggctagcctctcagttagttaggggttaaggctagt
ctctcagttagttagggttaaggctagtctcagttagttaggggttaagg
ctagtctctcagttagttaggggttaaggctagtctctcagttagttagg
ggttaaggctagtctcagttaagctgcttcaccctgtgacctgtccctag
ggaatccctggctgtcagctgcatcagggactccaccctttcaccccggg
ggttcattctttccctgtgaactcactcctcagcacacctacttagactt
gatatttctttcacatggaaagtgaagggtggagctctatcctcttaatg
aatctttaccttcattcttgtttctcctccacttctgcacttcatgtagc
gagatcatttggggaatttgctcccaattttacttcttaccccagtgctg
ggaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119461579_119462297
seq2: B6Ng01-147J09.b_43_761 (reverse)

seq1  AGCGCCAAGGCCTCCCTACCCAGGGGTCTGCTCTCTTTGTCCTCCAGGCA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCC-AGGCCTCCCTACCCAGGGGTCTGCTCTCTTTGTCCTCCAGGCA  49

seq1  CTTGCTGCCGGAGCCTGGCCTGTTCCATAGCTTAGCAGGCACCAGAC-AA  99
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  CTTGCTGCCGGAGCATGGCCTGTTCCATAGCTTAGCAGGCACCAGACAAA  99

seq1  ACTGGAGACCACATCTTCCACAGTGTGGAGTGGAGAGACACCCCGGTCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACCACATCTTCCACAGTGTGGAGTGGAGAGACACCCCGGTCCT  149

seq1  TAGGGTTGACTCCTGCTCACAGTCACATGGGAGGGAGTCAAGCTTCAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGGTTGACTCCTGCTCACAGTCACATGGGAGGGAGTCAAGCTTCATTT  199

seq1  TGGAGCCGGCCAGGAAGATCGGCAGGGTCCGAAGTTCCCTTACCCAGGCT  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGAGCCGGCCAGGAAGATCGTCAGGGTCCGAAGTTCCCTTACCCAGGCT  249

seq1  TTAGCTTCAAAGCACACCTGGAGGTGAGCTGCCATGTTGGAGGGGGGCAT  299
      |||| ||| |||||||||||||||||||  ||||||| ||||||||||||
seq2  TTAGGTTCGAAGCACACCTGGAGGTGAGAAGCCATGTAGGAGGGGGGCAT  299

seq1  TTCCAGTATGCTTCCGGCCTCTACACCCGTCTCTCACCCCAGTCCCACAC  349
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTCCAGTATGATTCCGGCCTCTACACCAGTCTCTCACCCCAGTCCCACAC  349

seq1  CCTGGGCTCCTTGCTTTTTAAAATCTCTCATCAGGAAGGACCACCTCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTCCTTGCTTTTTAAAATCTCTCATCAGGAAGGACCACCTCAGC  399

seq1  TCATTGGCTGTTGTAGCACCACACCCCCAGAGGCCAGCCATCCCCCTTTT  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGATGTTGTAGCACCACACCCCCAGAGGCCAGCCATCCCCCTTTT  449

seq1  AGCCTGTGGATCCTCAATGAGTGTCAGCCCATCTGCCTGCTTGCCAGAAA  499
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCCTGTGGATCCTCAATGAGTGTCAGCCCATATGCCTGCTTGCCAGAAA  499

seq1  GGGGCAAACACCACCATTGTGTCCTGGTATCTTTGTGGGAACCCAGGTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAACACCACCATTGTGTCCTGGTATCTTTGTGGGAACCCAGGTAC  549

seq1  TACCTAAACCACCATCCCCAACGCTGGCTGCGTCTTAACTGTTGCTCCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAACCACCATCCCCAACGCTGGCTGCGTCTTAACTGTTGCTCCAG  599

seq1  GCTGGACAAAGCTCTGACTGACTCCCTTCGCTCTTCCCTTGGCGTCTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAAAGCTCTGACTGACTCCCTTCGCTCTTCCCTTGGCGTCTGTA  649

seq1  AGATGAAGGAGGAGGGATCAGACCCTGGGCCTCCTAGAGACTGGGGTGCC  699
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AGATGAAGGAGGAGGGATCAGACCCTGGGCCTCCTAGAGAAGGGGGTGCC  699

seq1  CCAGGAACCTGGCTGAATTC  719
      ||||||||||||||||||||
seq2  CCAGGAACCTGGCTGAATTC  719

seq1: chr9_119297976_119298837
seq2: B6Ng01-147J09.g_68_925

seq1  GAATTCCCTGTTGAAGGACACCACAGTCTCAGGACTGTTAGCATCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTGAAGGACACCACAGTCTCAGGACTGTTAGCATCATTTT  50

seq1  TATCCCAGCAAGAATGAGCCCCTGTCTTATGTGCTCTAAAGTGGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCAAGAATGAGCCCCTGTCTTATGTGCTCTAAAGTGGAGAAAG  100

seq1  GGAGGCAGGATTCAAATGAGATGAGGTCTGTCCAAGTCAAACTCTAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGATTCAAATGAGATGAGGTCTGTCCAAGTCAAACTCTAAAGA  150

seq1  CAAACCAAAAAAGCCACAGGGCATGCTTGCGGGCAGCCTAGTTGTAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAAAAGCCACAGGGCATGCTTGCGGGCAGCCTAGTTGTAGGTT  200

seq1  TGTACAGTCAGGGGAGATGAAGACAGTGGATGGAGTCCCGAATAGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCAGGGGAGATGAAGACAGTGGATGGAGTCCCGAATAGCAAGA  250

seq1  AATTGAGACAGTGGTGAAAGCCTCGGAACCAAGAAGTCCAGAACCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGACAGTGGTGAAAGCCTCGGAACCAAGAAGTCCAGAACCATGGA  300

seq1  CAGCTCCGCAGAGGCCCTGACTCTGGGCTGTCTCCCTGGAACTGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCGCAGAGGCCCTGACTCTGGGCTGTCTCCCTGGAACTGCAGACA  350

seq1  TTACTCGAAGACAAAGACAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGAAGACAAAGACAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGT  400

seq1  TAGTTAGGGGTTAAGGCTAGCCTCTCAGTTAGTTAGGGGTTAAGGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGGGTTAAGGCTAGCCTCTCAGTTAGTTAGGGGTTAAGGCTAGT  450

seq1  CTCTCAGTTAGTTAGGGTTAAGGCTAGTCTCAGTTAGTTAGGGGTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTTAGTTAGGGTTAAGGCTAGTCTCAGTTAGTTAGGGGTTAAGG  500

seq1  CTAGTCTCTCAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGTTAGTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTCAGTTAGTTAGGGGTTAAGGCTAGTCTCTCAGTTAGTTAGG  550

seq1  GGTTAAGGCTAGTCTCAGTTAAGCTGCTTCACCCTGTGACCTGTCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGCTAGTCTCAGTTAAGCTGCTTCACCCTGTGACCTGTCCCTAG  600

seq1  GGAATCCCTGGCTGTCAGCTGCATCAGGGACTCCACCCTTTCACCCCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCTGGCTGTCAGCTGCATCAGGGACTCCACCCTTTCACCCCGGG  650

seq1  GGTTCATTCTTTCCCTGTGAACTCACTCCTCAGCACACCTACTTAGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTCTTTCCCTGTGAACTCACTCCTCAGCACACCTACTTAGACTT  700

seq1  GATATTTCTTTCAACATGGAAAGTGAAGGGTGGAGCTCTATCCTCTTAAT  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTTTC-ACATGGAAAGTGAAGGGTGGAGCTCTATCCTCTTAAT  749

seq1  GAATCTTTACCTTCATTCTTGTTTCTCCTCCAACTTCTGCAACTTCATGT  800
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  GAATCTTTACCTTCATTCTTGTTTCTCCTCC-ACTTCTGC-ACTTCATGT  797

seq1  AGCAAGATCA-TTGGGGAATTTGCTTCCAAATTTTTACTTCTTACCCCAA  849
      ||| |||||| |||||||||||||| ||||  ||||||||||||||||| 
seq2  AGCGAGATCATTTGGGGAATTTGCTCCCAA--TTTTACTTCTTACCCCAG  845

seq1  TGCTGGGAACTGA  862
      |||||||||||||
seq2  TGCTGGGAACTGA  858