BAC Information

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BAC

Clone NameB6Ng01-147M03
Chromosome9 (Build37)
Map Location 44,896,205 - 45,077,093
singlet/doubletdoublet
Overlap geneAmica1, Scn2b, Scn4b, Tmprss4, Il10ra
Upstream geneUsp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik
Downstream geneTmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147M03.bB6Ng01-147M03.g
ACCDH944548DH944549
length1,085762
definitionDH944548|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M03, 5' end.DH944549|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,896,205 - 44,897,299)(45,076,249 - 45,077,093)
sequence
gaattccccaggtctctacctcccagcctgcaaccatccctactaatgac
tccttcttttgtgatattgctggctggagagggtagggttgaggggagtg
gcagccattctgctgggaacaccagccacaataccagaggaattaggtca
tccatttgagtggcatttcacctgctctgtcataaggcaggaaatggtta
tacaaagttctaatacccaggttagagaatgtgttgtatctttccttatg
ttgtaagaaatgaaaatgtggatatcacatttcatttgtctgtatataga
attagtcatggggccttgtgcaagctagacaggtacctgttgcattttca
ttatgaatattatcattggctaagtactttttggtcagttttatggtgat
aactttgatatgtccacataatggtcttttcaatccagagtcctaggtct
tgttcccttcttgatttttctccaatgtctgttatttgcagagtgaatat
gtgctgttctactattccaaccttagcgtgcctacggggcgcttccagaa
ccggtcacatttggtgggggacaccttccataatgatggttctctcctgc
tccaagatgttcagaaggccgatgagggaatctacacctgtgaaatccgc
ctcaaaaatgagagcatggtgatgaaaaagcccgtggaactgtgggtgct
accagaggaacctaaaggtacagggtcacttacctgaaagaggggccaga
ggagaactgattgctgtggaatagggatggggactgacaactgccagcct
ttaggctgagtactcaccttagggcgagtcttcggatatagctgtagcta
ttagttgagcatagtccttcttcacagacacctgggaatcttgtattgcc
atccacccatccgaaatgacagtttggatgagtgactgtaattgttgtag
gatgagacttggaaagttttcttctttctgaccagaatctcatccacata
ctgtaacctaaagagcattgaatcagctgaagaaatctcaagaattacgt
ctcacagccacacctgtagctgtgggatatggtct
gaattccttgtatacgggaggctccccagcgctcgctctgttgctttaaa
gttcacattcgcgggagaatctgcttggatgggctggggtcccgccccag
ctccttcatgctggcaaaacggtctccggctcacctgctgtttaagtgga
ggaggctaagattaactgtggctgtttgggagtggccagcgatggatggg
taaagcctatagtttccgtcctgtacgtacccttgttcctcaaatcatta
tcctaccacctccggacaatccataacttagccctcacttttcggctgtt
ctggttcttccgtgggtctgatcgtgccccttcttagttaggctcctctc
cctgaaccctaccatctcaccccatcccttctttctgcccacccttcccg
accaccctgttagtctttagcccacaattcatctccgctgcctgctgccc
acccccctcacacacacacactttacccactcctcagctcaggctaggtt
cctgtagcccaggagagaatgaaaaagtggagagttggagggaccaagtg
gcacagaagtacgaagaccggggaccccaaaacacacttttacaggagtt
caaagtaaaaagagcacagtcagtcatgttatctacagaggcactgggga
tgtgccccgcttgaacatcacaaaacacgggctgaggtttcactccccct
ctcagagtttgaactgaaacacaaccttgagattcaaagaaaggggtggg
ggggggggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44896205_44897299
seq2: B6Ng01-147M03.b_48_1132

seq1  GAATTCCCCAGGTCTCTACCTCCCAGCCTGCAACCATCCCTACTAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGGTCTCTACCTCCCAGCCTGCAACCATCCCTACTAATGAC  50

seq1  TCCTTCTTTTGTGATATTGCTGGCTGGAGAGGGTAGGGTTGAGGGGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTGTGATATTGCTGGCTGGAGAGGGTAGGGTTGAGGGGAGTG  100

seq1  GCAGCCATTCTGCTGGGAACACCAGCCACAATACCAGAGGAATTAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATTCTGCTGGGAACACCAGCCACAATACCAGAGGAATTAGGTCA  150

seq1  TCCATTTGAGTGGCATTTCACCTGCTCTGTCATAAGGCAGGAAATGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGAGTGGCATTTCACCTGCTCTGTCATAAGGCAGGAAATGGTTA  200

seq1  TACAAAGTTCTAATACCCAGGTTAGAGAATGTGTTGTATCTTTCCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTTCTAATACCCAGGTTAGAGAATGTGTTGTATCTTTCCTTATG  250

seq1  TTGTAAGAAATGAAAATGTGGATATCACATTTCATTTGTCTGTATATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAAATGAAAATGTGGATATCACATTTCATTTGTCTGTATATAGA  300

seq1  ATTAGTCATGGGGCCTTGTGCAAGCTAGACAGGTACCTGTTGCATTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCATGGGGCCTTGTGCAAGCTAGACAGGTACCTGTTGCATTTTCA  350

seq1  TTATGAATATTATCATTGGCTAAGTACTTTTTGGTCAGTTTTATGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATATTATCATTGGCTAAGTACTTTTTGGTCAGTTTTATGGTGAT  400

seq1  AACTTTGATATGTCCACATAATGGTCTTTTCAATCCAGAGTCCTAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGATATGTCCACATAATGGTCTTTTCAATCCAGAGTCCTAGGTCT  450

seq1  TGTTCCCTTCTTGATTTTTCTCCAATGTCTGTTATTTGCAGAGTGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTCTTGATTTTTCTCCAATGTCTGTTATTTGCAGAGTGAATAT  500

seq1  GTGCTGTTCTACTATTCCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCTACTATTCCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAA  550

seq1  CCGGTCACATTTGGTGGGGGACACCTTCCATAATGATGGTTCTCTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCACATTTGGTGGGGGACACCTTCCATAATGATGGTTCTCTCCTGC  600

seq1  TCCAAGATGTTCAGAAGGCCGATGAGGGAATCTACACCTGTGAAATCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATGTTCAGAAGGCCGATGAGGGAATCTACACCTGTGAAATCCGC  650

seq1  CTCAAAAATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGGGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGGGTGCT  700

seq1  ACCAGAGGAACCTAAAGGTACAGGGTCACTTACCTGAAAGAGGGGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAACCTAAAGGTACAGGGTCACTTACCTGAAAGAGGGGCCAGA  750

seq1  GGAGAACTGATTGCTGTGGAAGAGGGATGGGGACTGACCAACTGCCAGCC  800
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GGAGAACTGATTGCTGTGGAATAGGGATGGGGACTGA-CAACTGCCAGCC  799

seq1  TTTAGGCTAAGTACTCACCTTAGGGCGAGTCTTCAGTATATAGCTGTAGC  850
      |||||||| ||||||||||||||||||||||||| | |||||||||||||
seq2  TTTAGGCTGAGTACTCACCTTAGGGCGAGTCTTC-GGATATAGCTGTAGC  848

seq1  TATTAGTTTGAGCATAGTCCTTCTTCACAGAACCCCTGGGAAGCTTGTAT  900
      |||||| ||||||||||||||||||||||| || |||||||| |||||||
seq2  TATTAG-TTGAGCATAGTCCTTCTTCACAG-ACACCTGGGAATCTTGTAT  896

seq1  TGTCCTTCCACACAGTCTGAAAATGACAGTTTGGATTGAGGTGACTGTAA  950
      || || ||||| || || | ||||||||||||||| ||| ||||||||||
seq2  TG-CCATCCACCCA-TCCG-AAATGACAGTTTGGA-TGA-GTGACTGTAA  941

seq1  TTGTTGTAGGATGAGACTTGGAAAGCTTTTTCTTCTTTCTGACCAAGAAT  1000
      |||||||||||||||||||||||||  ||||||||||||||||| |||||
seq2  TTGTTGTAGGATGAGACTTGGAAAG--TTTTCTTCTTTCTGACC-AGAAT  988

seq1  CTCAGCCA-AGACTGTAACCCAAAGAGGCATT-ATACAACAG-AGAAATC  1047
      |||| ||| | ||||||||| ||||| ||||| |  || | | |||||||
seq2  CTCATCCACATACTGTAACCTAAAGA-GCATTGAATCAGCTGAAGAAATC  1037

seq1  TCAAGAA-TAAGTCTCACAGGCAACCACTGGTAGCTGTTGGAT-TGGTCT  1095
      ||||||| || ||||||||| ||  |||  |||||||| |||| ||||||
seq2  TCAAGAATTACGTCTCACAGCCA--CACCTGTAGCTGTGGGATATGGTCT  1085

seq1: chr9_45076249_45077093
seq2: B6Ng01-147M03.g_81_831 (reverse)

seq1  CTTTCCTTCTCCAAACTGCCAGCTCTCTGAGAGTCACAGTTCTCAGTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCAGTGACCCTGTCATTCTCAGAAAACATACTTGTCCCAGCCCTT--  98
                                                   |||  
seq2  ---------------------------------------------CTTTC  5

seq1  CCCCCCCCCCACCCCTTTCTTTGAATCTCAAGGTTGTGTTTCAGTTGCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  CCCCCCCCCCACCCCTTTCTTTGAATCTCAAGGTTGTGTTTCAGTT--CA  53

seq1  AACTCTGAGAGGGGGAGTGAAAACCTCAGCCCGTG-TTTGTGATGTTC-A  196
      ||||||||||||||||||| ||||||||||||||| |||||||||||| |
seq2  AACTCTGAGAGGGGGAGTG-AAACCTCAGCCCGTGTTTTGTGATGTTCAA  102

seq1  GCGGGGCACATCCCCAGTGCCTCTGTAGATAACATGACTGACTGTGCTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCACATCCCCAGTGCCTCTGTAGATAACATGACTGACTGTGCTCT  152

seq1  TTTTACTTTGAACTCCTGTAAAAGTGTGTTTTGGGGTCCCCGGTCTTCGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTGAACTCCTGTAAAAGTGTGTTTTGGGGTCCCCGGTCTTCGT  202

seq1  ACTTCTGTGCCACTTGGTCCCTCCAACTCTCCACTTTTTCATTCTCTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGCCACTTGGTCCCTCCAACTCTCCACTTTTTCATTCTCTCCT  252

seq1  GGGCTACAGGAACCTAGCCTGAGCTGAGGAGTGGGTAAAGTGTGTGTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGGAACCTAGCCTGAGCTGAGGAGTGGGTAAAGTGTGTGTGTG  302

seq1  TGAGGGGGGTGGGCAGCAGGCAGCGGAGATGAATTGTGGGCTAAAGACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGGTGGGCAGCAGGCAGCGGAGATGAATTGTGGGCTAAAGACTA  352

seq1  ACAGGGTGGTCGGGAAGGGTGGGCAGAAAGAAGGGATGGGGTGAGATGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGTCGGGAAGGGTGGGCAGAAAGAAGGGATGGGGTGAGATGGT  402

seq1  AGGGTTCAGGGAGAGGAGCCTAACTAAGAAGGGGCACGATCAGACCCACG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCAGGGAGAGGAGCCTAACTAAGAAGGGGCACGATCAGACCCACG  452

seq1  GAAGAACCAGAACAGCCGAAAAGTGAGGGCTAAGTTATGGATTGTCCGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCAGAACAGCCGAAAAGTGAGGGCTAAGTTATGGATTGTCCGGA  502

seq1  GGTGGTAGGATAATGATTTGAGGAACAAGGGTACGTACAGGACGGAAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGGATAATGATTTGAGGAACAAGGGTACGTACAGGACGGAAACT  552

seq1  ATAGGCTTTACCCATCCATCGCTGGCCACTCCCAAACAGCCACAGTTAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTTACCCATCCATCGCTGGCCACTCCCAAACAGCCACAGTTAAT  602

seq1  CTTAGCCTCCTCCACTTAAACAGCAGGTGAGCCGGAGACCGTTTTGCCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTCCTCCACTTAAACAGCAGGTGAGCCGGAGACCGTTTTGCCAG  652

seq1  CATGAAGGAGCTGGGGCGGGACCCCAGCCCATCCAAGCAGATTCTCCCGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGAGCTGGGGCGGGACCCCAGCCCATCCAAGCAGATTCTCCCGC  702

seq1  GAATGTGAACTTTAAAGCAACAGAGCGAGCGCTGGGGAGCCTACCGTAT  845
      |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATGTGAACTTTAAAGCAACAGAGCGAGCGCTGGGGAGCCTCCCGTAT  751