BAC Information

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BAC

Clone NameB6Ng01-148B08
Chromosome9 (Build37)
Map Location 20,683,549 - 20,840,589
singlet/doubletdoublet
Overlap geneAngptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5
Upstream geneOlfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik
Downstream geneGlp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148B08.bB6Ng01-148B08.g
ACCDH944786DH944787
length1,0681,059
definitionDH944786|Mus musculus domesticus DNA, BAC clone: B6Ng01-148B08, 5' end.DH944787|Mus musculus domesticus DNA, BAC clone: B6Ng01-148B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,683,549 - 20,684,618)(20,839,525 - 20,840,589)
sequence
gaattcacacccagggccctatgccaccactcccaggcactcgggcacac
acttggacctgctcagaagaaaccacaagtgcaaaggtcctggaattgga
tctcatttcagatgtgctgaaaagaagacatagcaaagaggcctgtgggg
tggcatagaagggaagtgagagagccgtggaaacttctgagctagaggca
aggtacatcaactacagtggctgctcatcaggcgtcagctcccaagcact
gggcagtcttgggcacatgtggccgccttcgttggcaagcttggagtaaa
tgagagacctgggagcctccctgtgcccccccacacacaacgtatacaca
cacacacacacatacacatacatacatacgcacatacatatacatgcaca
tacatagacaacatacatacacacccgtacacacacaatcaagaccagat
gcactctacaaacagcatctacctacatccactcctacccactctcacct
ctcacagcccagacgctggctccagtgaggtttgcggcaattccacaaaa
tctgaggaaggcctgaaggaccaggacgaaggaccgggagtccttctggg
tgagtatctgggtgcaggagactgaaaagacagaagccgagagaagactt
ggaaaccacccatcccccagagcatggatggagcctgggagcacagcaag
tgtaaatatttagtatttccagtgtgagaaccctgggcagaatagccaga
tccccttgcccaggcctccggagcatgataacagaggccactgccctacg
agtctcttcctttctctcaggctcacagagcatgggaggccctaggccct
tgtagactttgtgggctccagactcagacaaccatgacaatgatgatgta
tcagttgagtacctgatgcctggcgctggggacacccttaaaggggtaaa
actttctcatttaaccccagcagccagtagagtgtgagcccctgcctaga
ttccccagtgaggggctgggggtgtagctcagtagtatgacaccttacaa
gtctcttgtacccatatt
gaattccctatgtagaccaggctggcctggaacttgctctgtagaccagg
ctggcctcaaactcagagatgtgcctgcctttgcctacagggtgctggga
ttaaaggcgtgcattaccactgttctatgccttcgggagacagcttctca
ctctggcatgtaccattttacttttctatttactctgtacgatatgtgtg
tgggaaagcatgaaaaggtaggcgttctctcctcccaccttcacatgggt
tctggccatcacttcaggtgatcaggcccctttcctgaggtctcaggatg
ctgctgactgatccccacaaagcactccccggtacactctcttgactgcc
tgtttttgccagactgtacccagtcccacagtcccacctacacttccctt
cagtgttttcccaatccctgcagaatccagcttctttcctgtccgtatag
gcccgtctcccctaactcggtgaacttgggcatgcatgcctctcccgact
cacattccacggtcagggtcacatctttgaccgcctggccttgcccattg
actgctgtgcatcggtaagtgcctgcgagggcacgggtcactggacccaa
taggcccagcgctagcaccgccccgccctcaggccttgcacagtgcaccg
agggctcagggtttccgcgggcctcgcagtggagggtctgctctggaccc
tctggccacgtccagcttctgggacaatccaagtcatccaggcgagtgtg
catctgcgggcacgaggcagaggagatagataaggttaaagatggagcag
gtaataggggctttggaggtcacagagatagggtgagcatccacttacac
agggacacgaagctcagagctctggttttttctagagtttccccgtccac
atcgagggcggcgtcgcagagaagccccgcttgtcatcgttctttgtaca
tttaactggagctcagcgggctgccccgggaccgcagctggattccctcc
aggtgacaagggccctgcccctgcccagcacttatggtcaccattttcct
ccgggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20683549_20684618
seq2: B6Ng01-148B08.b_47_1114

seq1  GAATTCACACCCAGGGCCCTATGCCACCACTCCCAGGCACTCGGGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCCAGGGCCCTATGCCACCACTCCCAGGCACTCGGGCACAC  50

seq1  ACTTGGACCTGCTCAGAAGAAACCACAAGTGCAAAGGTCCTGGAATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGACCTGCTCAGAAGAAACCACAAGTGCAAAGGTCCTGGAATTGGA  100

seq1  TCTCATTTCAGATGTGCTGAAAAGAAGACATAGCAAAGAGGCCTGTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCAGATGTGCTGAAAAGAAGACATAGCAAAGAGGCCTGTGGGG  150

seq1  TGGCATAGAAGGGAAGTGAGAGAGCCGTGGAAACTTCTGAGCTAGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGAAGGGAAGTGAGAGAGCCGTGGAAACTTCTGAGCTAGAGGCA  200

seq1  AGGTACATCAACTACAGTGGCTGCTCATCAGGCGTCAGCTCCCAAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATCAACTACAGTGGCTGCTCATCAGGCGTCAGCTCCCAAGCACT  250

seq1  GGGCAGTCTTGGGCACATGTGGCCGCCTTCGTTGGCAAGCTTGGAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTTGGGCACATGTGGCCGCCTTCGTTGGCAAGCTTGGAGTAAA  300

seq1  TGAGAGACCTGGGAGCCTCCCTGTGCCCCCCCACACACAACGTATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCTGGGAGCCTCCCTGTGCCCCCCCACACACAACGTATACACA  350

seq1  CACACACACACATACACATACATACATACGCACATACATATACATGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACATACATACATACGCACATACATATACATGCACA  400

seq1  TACATAGACAACATACATACACACCCGTACACACACAATCAAGACCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGACAACATACATACACACCCGTACACACACAATCAAGACCAGAT  450

seq1  GCACTCTACAAACAGCATCTACCTACATCCACTCCTACCCACTCTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTACAAACAGCATCTACCTACATCCACTCCTACCCACTCTCACCT  500

seq1  CTCACAGCCCAGACGCTGGCTCCAGTGAGGTTTGCGGCAATTCCACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCCAGACGCTGGCTCCAGTGAGGTTTGCGGCAATTCCACAAAA  550

seq1  TCTGAGGAAGGCCTGAAGGACCAGGACGAAGGACCGGGAGTCCTTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAGGCCTGAAGGACCAGGACGAAGGACCGGGAGTCCTTCTGGG  600

seq1  TGAGTATCTGGGTGCAGGAGACTGAAAAGACAGAAGCCGAGAGAAGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCTGGGTGCAGGAGACTGAAAAGACAGAAGCCGAGAGAAGACTT  650

seq1  GGAAACCACCCATCCCCCAGAGCATGGATGGAGCCTGGGAGCACAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCACCCATCCCCCAGAGCATGGATGGAGCCTGGGAGCACAGCAAG  700

seq1  TGTAAATATTTAGTATTTCCAGTGTGAGAACCCTGGGCAGAATAGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTTAGTATTTCCAGTGTGAGAACCCTGGGCAGAATAGCCAGA  750

seq1  TCCCCTTGCCCAGGCCTCCGGAGCATGATAACAGAGGCCACTGCCCTACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGCCCAGGCCTCCGGAGCATGATAACAGAGGCCACTGCCCTACG  800

seq1  AGTCTCTTCCTTTCTCTCAGGCTCACAGAGCATGGGAGGCCCTAGGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTCCTTTCTCTCAGGCTCACAGAGCATGGGAGGCCCTAGGCCCT  850

seq1  GGTAGAC-TTGTGGGCTCCAGACTCAGACAACCATGACAATGATGATGTA  899
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTTTGTGGGCTCCAGACTCAGACAACCATGACAATGATGATGTA  900

seq1  TCAG-TGAGTACCCTGATGCCTGGCGCTGGGGACACCCTTAAAGGGGTAA  948
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAGTA-CCTGATGCCTGGCGCTGGGGACACCCTTAAAGGGGTAA  949

seq1  AACTTTCTCATTTAACCCCAGCAGCCAGTAGAGGTGTGAGCCCCTGCCTA  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACTTTCTCATTTAACCCCAGCAGCCAGTAGA-GTGTGAGCCCCTGCCTA  998

seq1  GAATCCCCCAGTGAGGGGCTGGGGGTGTAGCTCAGTAGTAGGACA-CTTA  1047
      | || ||||||||||||||||||||||||||||||||||| |||| ||||
seq2  G-ATTCCCCAGTGAGGGGCTGGGGGTGTAGCTCAGTAGTATGACACCTTA  1047

seq1  CAAAGTCCTTGGTACCCAATATT  1070
      | |||||  | |||||| |||||
seq2  C-AAGTCTCTTGTACCC-ATATT  1068

seq1: chr9_20839525_20840589
seq2: B6Ng01-148B08.g_70_1128 (reverse)

seq1  AGCCCCCGAGGGAAAAATGGTGACCATAAGCTGCTGGGCAGGGGCTCGAG  50
      |||||||| | | ||||||||||||||||| ||||||||||||||  | |
seq2  AGCCCCCG-GAGGAAAATGGTGACCATAAG-TGCTGGGCAGGGGC-AGGG  47

seq1  CCCTTGTCACCCTGGAGGGAATTCCAGCTGCGGTCCCGGGGCAGCCCGCT  100
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CCCTTGTCA-CCTGGAGGGAA-TCCAGCTGCGGTCCCGGGGCAGCCCGCT  95

seq1  GAGCTCCAGTTAAATGTTACAAAGAACGATGACAAGCGGGGCTTCTTCTG  150
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GAGCTCCAGTTAAATG-TACAAAGAACGATGACAAGCGGGGCTTC-TCTG  143

seq1  CGACGCCGCCCTCGATGTGGACGGGGAAACTCTAAGAAAAAACCAGAGCT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGACGCCGCCCTCGATGTGGACGGGGAAACTCT-AGAAAAAACCAGAGCT  192

seq1  CTGAGCTTCGTGT-CCTGTGTGAGTGGATGCTCACCCTATCTCTGTGACC  249
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CTGAGCTTCGTGTCCCTGTGTAAGTGGATGCTCACCCTATCTCTGTGACC  242

seq1  TCCAAAGCCCCTATTACCTGCTCCATCTTTAACCTTATCTATCTCCTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCCCCTATTACCTGCTCCATCTTTAACCTTATCTATCTCCTCTG  292

seq1  CCTCGTGCCCGCAGATGCAC-CTCGCCTGGATGACTTGGATTGTCCCAGA  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTCGTGCCCGCAGATGCACACTCGCCTGGATGACTTGGATTGTCCCAGA  342

seq1  AGCTGGACGTGGCCAGAGGGTCCAGAGCAGACCCTCCACTGCGAGGCCCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACGTGGCCAGAGGGTCCAGAGCAGACCCTCCACTGCGAGGCCCG  392

seq1  CGGAAACCCTGAGCCCTCGGTGCACTGTGCAAGGCCTGAGGGCGGGGCGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAACCCTGAGCCCTCGGTGCACTGTGCAAGGCCTGAGGGCGGGGCGG  442

seq1  TGCTAGCGCTGGGCCTATTGGGTCCAGTGACCCGTGCCCTCGCAGGCACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCGCTGGGCCTATTGGGTCCAGTGACCCGTGCCCTCGCAGGCACT  492

seq1  TACCGATGCACAGCAGTCAATGGGCAAGGCCAGGCGGTCAAAGATGTGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGATGCACAGCAGTCAATGGGCAAGGCCAGGCGGTCAAAGATGTGAC  542

seq1  CCTGACCGTGGAATGTGAGTCGGGAGAGGCATGCATGCCCAAGTTCACCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCGTGGAATGTGAGTCGGGAGAGGCATGCATGCCCAAGTTCACCG  592

seq1  AGTTAGGGGAGACGGGCCTATACGGACAGGAAAGAAGCTGGATTCTGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGGAGACGGGCCTATACGGACAGGAAAGAAGCTGGATTCTGCAG  642

seq1  GGATTGGGAAAACACTGAAGGGAAGTGTAGGTGGGACTGTGGGACTGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGGAAAACACTGAAGGGAAGTGTAGGTGGGACTGTGGGACTGGGT  692

seq1  ACAGTCTGGCAAAAACAGGCAGTCAAGAGAGTGTACCGGGGAGTGCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGGCAAAAACAGGCAGTCAAGAGAGTGTACCGGGGAGTGCTTTG  742

seq1  TGGGGATCAGTCAGCAGCATCCTGAGACCTCAGGAAAGGGGCCTGATCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCAGTCAGCAGCATCCTGAGACCTCAGGAAAGGGGCCTGATCAC  792

seq1  CTGAAGTGATGGCCAGAACCCATGTGAAGGTGGGAGGAGAGAACGCCTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGATGGCCAGAACCCATGTGAAGGTGGGAGGAGAGAACGCCTAC  842

seq1  CTTTTCATGCTTTCCCACACACATATCGTACAGAGTAAATAGAAAAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGCTTTCCCACACACATATCGTACAGAGTAAATAGAAAAGTAA  892

seq1  AATGGTACATGCCAGAGTGAGAAGCTGTCTCCCGAAGGCATAGAACAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACATGCCAGAGTGAGAAGCTGTCTCCCGAAGGCATAGAACAGTG  942

seq1  GTAATGCACGCCTTTAATCCCAGCACCCTGTAGGCAAAGGCAGGCACATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCACGCCTTTAATCCCAGCACCCTGTAGGCAAAGGCAGGCACATC  992

seq1  TCTGAGTTTGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGCCAGCCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGCCAGCCTG  1042

seq1  GTCTACATAGGGAATTC  1065
      |||||||||||||||||
seq2  GTCTACATAGGGAATTC  1059