BAC Information

Click to search

BAC

Clone NameB6Ng01-148I12
Chromosome3 (Build37)9 (Build37)
Map Location 45,385,686 - 45,386,22652,344,971 - 52,346,102
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148I12.bB6Ng01-148I12.g
ACCDH945107DH945108
length1,1161,125
definitionDH945107|Mus musculus domesticus DNA, BAC clone: B6Ng01-148I12, 5' end.DH945108|Mus musculus domesticus DNA, BAC clone: B6Ng01-148I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,385,686 - 45,386,226)(52,344,971 - 52,346,102)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgtgattttctcaaagaaccaactcctcgttgggttaattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaattggctttccttttttctagagc
ttttagatgtgttgtcaagctgctagtatgttctctctcccgttttttct
tgaagcaactcatagctattgagttccctcttagaaatgcttcattggtt
cccaaaggtttgggtacagttgtggcttcatttcattaaactctaaaagg
tctttaatttcttcctttatctctccttgaccaaggttcattggaaaaaa
gtttggttcagtttcc
gaattcagttaaaaaagaaatggtgatatctgttgtgtacttaattaccc
atagtatgatggttgataagttttaaacttccaattattcattcaaaaaa
tatccttagagatcctattatgtgccaggaatcaactagatatgggaact
gcctggaaagaatgtgaagaaaattgtcaactagaattggctttaaagca
gaatatgcaaaagggtgttaaatgaggaaaagtgggtaaggattacctac
tctcaaactcaagtgtatgagcagctgtaataggctacagtctgaggtca
catccgctatcatctacttgttgaattgaagtggtttgagagccagtgtc
caaatgctgacgactttgggattactcagtagccacatagctgtgataaa
tcataattcttaaccaatgcatcattgttgtgatataatttctttactgg
gagttccaagctagttggactctaacttgatgctatttcagctcaaggtc
ctgaaaaaaatgtctcgggtcctaccaagcactggtgtatttgaacagtg
ctcccatgagctctgagaaccttaactttcatacaagaaagaaaatatat
aaactgccatgcagcagttcaatgtttgcccagcacagtgagtgcttgtc
tgtaattcctttcatgaatttgctatttgtctgtagcttaggaatcttta
ctcagttaccagtaatcatgctccataccttcaataaaatttaggtcatt
accatgcatctactggaagcacgacgatagttcaggtggccaaaggggct
gagtaaccctggtttaatttttgttctatcactacctactgcataaccat
gaccaagttcctttatgttccatatgcttcatctccttctgctggaaatc
gagacatgataacacaattaaggcaaagtaattcacctagacactttgat
tccagcctttatcacctgtattatgtctacggtttctttatttctttagc
tgtatgggtagcaaaatcatatcaaagaatgtctcttttgagaagttagc
catctcatctatcttcttacacctttaaaaaacattctcaatcttctttt
cagtgcttagagtcaaccccagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45385686_45386226
seq2: B6Ng01-148I12.b_624_1161 (reverse)

seq1  GGAAACTGAACAACACTCTTCT-CAATGATACCTTGGTCAAGGAAGGAAT  49
      ||||||||||| | ||| || | |||||| ||||||||||||| ||  ||
seq2  GGAAACTGAACCAAACTTTTTTCCAATGA-ACCTTGGTCAAGG-AGAGAT  48

seq1  AAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAA  99
      |||| |||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAAGGAAGAAATTAAAGACCTTTTAGAGTTTAATG-AAATGAAGCCACAA  97

seq1  C-GTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACT  148
      | ||||||||||||||||||  ||||| ||||||||||||||||| ||||
seq2  CTGTACCCAAACCTTTGGGAACCAATG-AAGCATTTCTAAGAGGG-AACT  145

seq1  C-ATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGC  197
      | ||||||||||||  ||||||||||||||||||||||| ||||||||||
seq2  CAATAGCTATGAGTTGCTTCAAGAAAAAACGGGAGAGAGAACATACTAGC  195

seq1  AGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACC  247
      |||||||||||||||||||||||||||||||||| | |||| ||||||||
seq2  AGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAAGCCAATTCACC  245

seq1  CAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACC  295

seq1  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG  347
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCCAACGAGGAGTTGG  345

seq1  TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  397
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGAAAATC-ACAAGATAGATAAACCCTTAGCTAGACTCACTAA  394

seq1  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  444

seq1  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  494

seq1  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGA  538

seq1: chr9_52344971_52346102
seq2: B6Ng01-148I12.g_65_1189 (reverse)

seq1  GGACTTGGGGTTGACGTCT-AGCACTGGAAAAGAAGA-TGAG-ATGTTTT  47
      |||| |||||||||| ||| |||||| |||||||||| |||| |||||||
seq2  GGAC-TGGGGTTGAC-TCTAAGCACT-GAAAAGAAGATTGAGAATGTTTT  47

seq1  TTAAAAGTGTAAGGAAGAT-GATGAGATGGCTAAACTTTCTC-AAAGAGA  95
      ||||| |||||| |||||| ||||||||||||||   ||||| |||||||
seq2  TTAAAGGTGTAA-GAAGATAGATGAGATGGCTAA--CTTCTCAAAAGAGA  94

seq1  CATTCTTTTGTTATGATTTTGCTACACATTACAGCTAAAGAAATAAAGAA  145
      ||||| |||| |||||||||||||| || ||||||||||||||||||| |
seq2  CATTC-TTTGATATGATTTTGCTACCCA-TACAGCTAAAGAAATAAAG-A  141

seq1  AACCGTAGACAATAATAACAGTGATAAAGGCTGGAATCAAAGTGTCTAAG  195
      |||||||||| ||||||   ||||||||||||||||||||||||||| ||
seq2  AACCGTAGAC-ATAATACAGGTGATAAAGGCTGGAATCAAAGTGTCT-AG  189

seq1  GTGAATTACTTTGCCTTAATTGTGTTATCATTGTCTCGATTTCCAGCAGA  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAATTACTTTGCCTTAATTGTGTTATCA-TGTCTCGATTTCCAGCAGA  238

seq1  AGGAGATGAAGCATATGGAACATAAAGGAACTTGGTCATGGTTATGCAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGAAGCATATGGAACATAAAGGAACTTGGTCATGGTTATGCAGT  288

seq1  AGGTAGTGATAGAACAAAAATTAAACCAGGGTTACTCAGCCCCTTTGGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGATAGAACAAAAATTAAACCAGGGTTACTCAGCCCCTTTGGCC  338

seq1  ACCTGAACTATCGTCGTGCTTCCAGTAGATGCATGGTAATGACCTAAATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACTATCGTCGTGCTTCCAGTAGATGCATGGTAATGACCTAAATT  388

seq1  TTATTGAAGGTATGGAGCATGATTACTGGTAACTGAGTAAAGATTCCTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAGGTATGGAGCATGATTACTGGTAACTGAGTAAAGATTCCTAA  438

seq1  GCTACAGACAAATAGCAAATTCATGAAAGGAATTACAGACAAGCACTCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGACAAATAGCAAATTCATGAAAGGAATTACAGACAAGCACTCAC  488

seq1  TGTGCTGGGCAAACATTGAACTGCTGCATGGCAGTTTATATATTTTCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGGCAAACATTGAACTGCTGCATGGCAGTTTATATATTTTCTTT  538

seq1  CTTGTATGAAAGTTAAGGTTCTCAGAGCTCATGGGAGCACTGTTCAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGAAAGTTAAGGTTCTCAGAGCTCATGGGAGCACTGTTCAAATA  588

seq1  CACCAGTGCTTGGTAGGACCCGAGACATTTTTTTCAGGACCTTGAGCTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGCTTGGTAGGACCCGAGACATTTTTTTCAGGACCTTGAGCTGA  638

seq1  AATAGCATCAAGTTAGAGTCCAACTAGCTTGGAACTCCCAGTAAAGAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATCAAGTTAGAGTCCAACTAGCTTGGAACTCCCAGTAAAGAAAT  688

seq1  TATATCACAACAATGATGCATTGGTTAAGAATTATGATTTATCACAGCTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACAACAATGATGCATTGGTTAAGAATTATGATTTATCACAGCTA  738

seq1  TGTGGCTACTGAGTAATCCCAAAGTCGTCAGCATTTGGACACTGGCTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTACTGAGTAATCCCAAAGTCGTCAGCATTTGGACACTGGCTCTC  788

seq1  AAACCACTTCAATTCAACAAGTAGATGATAGCGGATGTGACCTCAGACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTTCAATTCAACAAGTAGATGATAGCGGATGTGACCTCAGACTG  838

seq1  TAGCCTATTACAGCTGCTCATACACTTGAGTTTGAGAGTAGGTAATCCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATTACAGCTGCTCATACACTTGAGTTTGAGAGTAGGTAATCCTT  888

seq1  ACCCACTTTTCCTCATTTAACACCCTTTTGCATATTCTGCTTTAAAGCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTTTCCTCATTTAACACCCTTTTGCATATTCTGCTTTAAAGCCA  938

seq1  ATTCTAGTTGACAATTTTCTTCACATTCTTTCCAGGCAGTTCCCATATCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTGACAATTTTCTTCACATTCTTTCCAGGCAGTTCCCATATCT  988

seq1  AGTTGATTCCTGGCACATAATAGGATCTCTAAGGATATTTTTTGAATGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCCTGGCACATAATAGGATCTCTAAGGATATTTTTTGAATGAA  1038

seq1  TAATTGGAAGTTTAAAACTTATCAACCATCATACTATGGGTAATTAAGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGAAGTTTAAAACTTATCAACCATCATACTATGGGTAATTAAGTA  1088

seq1  CACAACAGATATCACCATTTCTTTTTTAACTGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  CACAACAGATATCACCATTTCTTTTTTAACTGAATTC  1125