BAC Information

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BAC

Clone NameB6Ng01-148N09
Chromosome9 (Build37)1 (Build37)
Map Location 3,126,348 - 3,127,00397,649,245 - 97,650,411
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148N09.bB6Ng01-148N09.g
ACCDH945335DH945336
length9591,145
definitionDH945335|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N09, 5' end.DH945336|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,126,348 - 3,127,003)(97,649,245 - 97,650,411)
sequence
gaattcactcttgcacctgcgtacgaggcttatttactagttaggcacag
cggaggcctgcgccatcttataatggcgattgctcgcagcacgtaccggc
tttccacatctattcaaggcctccacctgagccacagtataggaagcact
caggccggactcagccaaatttctaattaccttgaaatccagaggctcat
gatatatcttccctgtttggtcggtgaaaataggacatcccagcaaggag
aatctaacctgtctccaaacctccggacagaagatccgcctataggtggc
tgctgaggaggcatagggaggaggcgcagaagctaatttgccttcctcct
ccgcctctgctcttttattttgtcctttctgtccacctgataacactgtg
tctcctttctttttcctttttctttttaagcccttctcttccgacatatt
ttcttgttgctctgtaaggattttctgacctgtcttgactgcctctacac
acagtttcaaacagtaacagagtccatatatcagaacaaacaagaccaaa
actatcagacctacccacaaagggtcaatgggagaaaaaagcataactac
acagtgaggatctagtgatcactacacggaggttatccatagtcccttaa
cttgtcccaaagccatgaacctaaacttgtcccaaaacctggaacctttt
gttaccttttgcttgcttcctggcaactttatgcttgcctctattttatc
cgaggtccttcccaaactcctggggtcgcaagtttcactcaccatgaact
taccctgcctgcaaccactgactgctgaaagttctgaactcggtggggga
gtcggttccccgtatgggccaccacacgtccgctctcgaccagcaagaac
gacatgaccaccagtccttctaacagcagtttattcagtcttcatctttc
ttctttctc
gaattctaaatattagataattcacatgaagcagaattttaaaaactaaa
aacaaagaaataaaaagcatcattaaaatgttagacaagctctggcataa
ctataattacataaaatataaatagatcttttttaaaatataaaaagctg
tccctttttgaataagaaaatatttcaaatataattatagagtgaaaatt
ttaaaataacggaaaataatattgtgtaatagtcaaagaaaaacaggatt
gtgtatattattagcaacaaatgcaaacctcatttcacagtaaactacca
taaggaactcttactctttagatctgtattgcttgattcctccacaaaga
ttcattccaatcacaccagtcatacatatctatatgctgaaataaagcta
caaaatgtggaataatattctgatagaaatcaaatgggaacacacatcca
tagatagacaaaattcacccaaggtagtgtgatacttaacccccatttgc
caagtcttctgaggtcaacaacccctttatcacacaactccctcatctgc
agtctcttaagtcatctagcccaatttatactcctcagatactcttggtg
tgaggcatggtgaccatgaaggaggctatacagcattaaagaaactccct
ttcatctctcggcaggtatcaattgccagtaactctcagttagagggggg
acttcctggccacctctctccttacataaggcaatgttatctgccttgag
cttcaggatttaaaggctatattttaaaggactgcatgaaaaagcaaaca
tccagagttttgttgcaatcttccaggaagagctaacaccatttatattt
atagttgttctgagtatggaccacagtatgtaagcattcctaaactgcta
tatatatatgtaagactgcgtcttttctgctacccacaagtatctctttt
ccctcagtttatatctatcctttaaggtgcttgatgagtgggattacact
tgtctctcaatcttcagtaacagcagtgtgtctgatcagcacatttagca
gtgcctgataagatgtgtgagaacatgagactccctattgaactcagtct
ccttgtttcccagcctcttattcctgctactgtctacaggagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_3126348_3127003
seq2: B6Ng01-148N09.b_155_801

seq1  TCTATTCAAGGCCTCCACCTGAGCCACAGTATAGGAAGCACTCAGGCCGT  50
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TCTATTCAAGGCCTCCACCTGAGCCACAGTATAGGAAGCACTCAGGC---  47

seq1  ATGTCCGCACGGACTCAGCAAAATTCCTGATTACTTTGAAATCTAGAGGC  100
               |||||||||| ||||| || ||||| |||||||| ||||||
seq2  ---------CGGACTCAGCCAAATTTCTAATTACCTTGAAATCCAGAGGC  88

seq1  TCATGATATCTCTGCCCTGCTTGGTCTGTGAAAATAGGACATCCCAGCAA  150
      ||||||||| ||| ||||| |||||| |||||||||||||||||||||||
seq2  TCATGATATATCTTCCCTGTTTGGTCGGTGAAAATAGGACATCCCAGCAA  138

seq1  GGAGAATCTATCTTCTCTCCAAACCTCCGGACAGAAGGTCCACCTATAGG  200
      |||||||||| | | |||||||||||||||||||||| ||| ||||||||
seq2  GGAGAATCTAACCTGTCTCCAAACCTCCGGACAGAAGATCCGCCTATAGG  188

seq1  TGGTTGCCAAGGAGGCATAGGGAGGAGGCGCAGAAGCTAATTCGCCTTCC  250
      ||| |||  ||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCTGCTGAGGAGGCATAGGGAGGAGGCGCAGAAGCTAATTTGCCTTCC  238

seq1  TCCTCCGCCTCGGCTCTTTTATTTTGTCCTTTCTGTCCACCTGATAACAC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCCTCTGCTCTTTTATTTTGTCCTTTCTGTCCACCTGATAACAC  288

seq1  TGTGTCTCCTTTCTTTTCCCTTTTTCTTTTTAAGCCCTTCTCTTCTTCCT  350
      ||||||||||||||||| ||||||||||||||||||||||   |||||| 
seq2  TGTGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTTC---TCTTCCG  335

seq1  ACATACTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCC  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCC  385

seq1  TCT------CGATTCAAACAGTAACAGAGTCCATATATCAGAACAAACAA  444
      |||       | ||||||||||||||||||||||||||||||||||||||
seq2  TCTACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAA  435

seq1  GACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCA  485

seq1  TAACTACACAGCGAGAATCTATTGATCACTACACTGAGCTTAT-CATAGT  543
      ||||||||||| ||| ||||| |||||||||||| ||| |||| ||||||
seq2  TAACTACACAGTGAGGATCTAGTGATCACTACACGGAGGTTATCCATAGT  535

seq1  TCCTTAACTTGTCCCAAAACCGTGAACCTTAACTTGTCCCAAAACCAGGA  593
       ||||||||||||||||| || ||||||| |||||||||||||||| |||
seq2  CCCTTAACTTGTCCCAAAGCCATGAACCTAAACTTGTCCCAAAACCTGGA  585

seq1  ACCTTATCGTTACTTTGTGCCTGCTTCCTGGCAACTTTATGCTTGCCTCT  643
      ||||| | ||||| || ||| |||||||||||||||||||||||||||||
seq2  ACCTT-TTGTTACCTTTTGCTTGCTTCCTGGCAACTTTATGCTTGCCTCT  634

seq1  ATTTTATCCGAGG  656
      |||||||||||||
seq2  ATTTTATCCGAGG  647

seq1: chr1_97649245_97650411
seq2: B6Ng01-148N09.g_68_1212

seq1  GAATTCTAAATATTAGATAATTCACATGAAGCAGAATTTTAAAAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATATTAGATAATTCACATGAAGCAGAATTTTAAAAACTAAA  50

seq1  AACAAAGAAATAAAAAGCATCATTAAAATGTTAGACAAGCTCTGGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAATAAAAAGCATCATTAAAATGTTAGACAAGCTCTGGCATAA  100

seq1  CTATAATTACATAAAATATAAATAGATCTTTTTTAAAATATAAAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTACATAAAATATAAATAGATCTTTTTTAAAATATAAAAAGCTG  150

seq1  TCCCTTTTTGAATAAGAAAATATTTCAAATATAATTATAGAGTGAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTGAATAAGAAAATATTTCAAATATAATTATAGAGTGAAAATT  200

seq1  TTAAAATAACGGAAAATAATATTGTGTAATAGTCAAAGAAAAACAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAACGGAAAATAATATTGTGTAATAGTCAAAGAAAAACAGGATT  250

seq1  GTGTATATTATTAGCAACAAATGCAAACCTCATTTCACAGTAAACTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATTATTAGCAACAAATGCAAACCTCATTTCACAGTAAACTACCA  300

seq1  TAAGGAACTCTTACTCTTTAGATCTGTATTGCTTGATTCCTCCACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACTCTTACTCTTTAGATCTGTATTGCTTGATTCCTCCACAAAGA  350

seq1  TTCATTCCAATCACACCAGTCATACATATCTATATGCTGAAATAAAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCAATCACACCAGTCATACATATCTATATGCTGAAATAAAGCTA  400

seq1  CAAAATGTGGAATAATATTCTGATAGAAATCAAATGGGAACACACATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTGGAATAATATTCTGATAGAAATCAAATGGGAACACACATCCA  450

seq1  TAGATAGACAAAATTCACCCAAGGTAGTGTGATACTTAACCCCCATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACAAAATTCACCCAAGGTAGTGTGATACTTAACCCCCATTTGC  500

seq1  CAAGTCTTCTGAGGTCAACAACCCCTTTATCACACAACTCCCTCATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTCTGAGGTCAACAACCCCTTTATCACACAACTCCCTCATCTGC  550

seq1  AGTCTCTTAAGTCATCTAGCCCAATTTATACTCCTCAGATACTCTTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTAAGTCATCTAGCCCAATTTATACTCCTCAGATACTCTTGGTG  600

seq1  TGAGGCATGGTGACCATGAAGGAGGCTATACAGCATTAAAGAAACTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGGTGACCATGAAGGAGGCTATACAGCATTAAAGAAACTCCCT  650

seq1  TTCATCTCTCGGCAGGTATCAATTGCCAGTAACTCTCAGTTAGAGGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCTCGGCAGGTATCAATTGCCAGTAACTCTCAGTTAGAGGGGGG  700

seq1  ACTTCCTGGCCACCTCTCTCCTTACATAAGGCAATGTTATCTGCCTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGGCCACCTCTCTCCTTACATAAGGCAATGTTATCTGCCTTGAG  750

seq1  CTTCAGGATTT-AAGGCTATATTTTAAAGGACTGCATGAAAAAGCAAACA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGATTTAAAGGCTATATTTTAAAGGACTGCATGAAAAAGCAAACA  800

seq1  TCCAGAGTTTTGTTGCAATCTTCCAGGAAGAGCTAACACCATTTATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTTTGTTGCAATCTTCCAGGAAGAGCTAACACCATTTATATTT  850

seq1  ATAGTTGTTCTGAGTATGGACCACAGTATGTAAGCATTCCTAAACTGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTTCTGAGTATGGACCACAGTATGTAAGCATTCCTAAACTGCTA  900

seq1  TATATATATGTAAGACTGCGTCTTTTCTGCTACCCACAAGGTATCTCTTT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TATATATATGTAAGACTGCGTCTTTTCTGCTACCCACAA-GTATCTC-TT  948

seq1  TTCCCTCAGGTTTATATCCTATCCTTTAAGGGTGCTTGATGAGTGGGATT  999
      |||||||| |||||||| ||||||||||| |||||||||||||||||| |
seq2  TTCCCTCA-GTTTATAT-CTATCCTTTAA-GGTGCTTGATGAGTGGGA-T  994

seq1  TACACTTGTTCTTCTCAATCTTCAGTAACCAGCAGTGTGTCTGATACAGC  1049
      |||||||||   |||||||||||||||| |||||||||||||||| ||||
seq2  TACACTTGT--CTCTCAATCTTCAGTAA-CAGCAGTGTGTCTGAT-CAGC  1040

seq1  ACATTTAGCAGTTGCCTGATAAGATTGGTGTGAAGAACAATGAGACTTCC  1099
      ||||||||||| |||||||||||||  ||||| ||||| ||||||| |||
seq2  ACATTTAGCAG-TGCCTGATAAGAT--GTGTG-AGAAC-ATGAGAC-TCC  1084

seq1  CTATTGGACTCAGTCTTCCCTTGTTCCCCCAGCCTCTTTATTCTCTGCTA  1149
      |||||| |||||||||  |||||||  ||||||||| |||||| ||||||
seq2  CTATTGAACTCAGTCT--CCTTGTT-TCCCAGCCTC-TTATTC-CTGCTA  1129

seq1  ACTTGTCTACAGAAGTTT  1167
         ||||||||| |||||
seq2  --CTGTCTACAGGAGTTT  1145