BAC Information

Click to search

BAC

Clone NameB6Ng01-149C05
Chromosome9 (Build37)
Map Location 101,655,145 - 101,765,844
singlet/doubletdoublet
Overlap genenone
Upstream geneStag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C05.bB6Ng01-149C05.g
ACCDH945558DH945559
length1,0191,043
definitionDH945558|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C05, 5' end.DH945559|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,655,145 - 101,655,871)(101,764,800 - 101,765,844)
sequence
gaattcaacttgacaagaatacagctacctttcctgtgcatttctgtaat
agttgtggactatttcccctggataaaacattctgttttccaggcaagga
tgagacttataaggctcagagaatgcacgaaaaaattcacaagactgaca
ggcaccctccccaagactctatcttcaacatacaagttctaaatttccac
ggatttgtctaaaagttgagcagtagactttgttgtggttcaggaatcgg
cacataaaccatgcaaacaatgatctcagtcaaacaagaatagtttattg
agtgcgcaccccaagattaatcaatcaggaacacaaaaaaggacttagga
gtctaattgggatgccagtctgttcttttttaaaaatttttaatattatt
tttattacatattttcctcaattacatttccaatgctatcccaaaagtcc
cccaaaccgcccacccccgctaccctaccaacccattcccattttttttg
gccctggcattcccctgtactggggcatttaagtttgcttgtccaatggg
cctctctttccagtgatggccgactaggccatttttgatacatatgcagc
tagagtcaaaagctccggggtactagttagttcataacgttgttctacct
atagggttgcagatccctttagctccttgggtactttctctagctcctcc
attgggagccctgtgatccatccaatagctgactgtgagcatccacttct
gtgtttgttaggccccggcatagtctcacaagagacagctatatctgggt
cctttcagcaaaatcttgctagtgtatgcgatggtgtcagcgtttggaag
ctgattatgggatggatccctggatatggcagtctctagatgatctatcc
tttcatcacagctccaaactttgtctctgtaactccttccatgggtgttt
gttcccaattctagaaaggggcacagtgtccacactttggtcttcattct
tctgagttcatgcgttagc
gaattcactatgtaggacaggttggtctcaaactcacaccaattcaccta
cctcaacattcccagcgaatggggagatcattggcctgagtcagcttgcc
tagtaagacttttatataaaacaactgaattcaaagataaacagagctca
gactccaaatagcaggctgtgatgtaggcgtgtctggccacgtctcactc
tgccccctgagagccagcccactggaaactggacaaacctatttggaaat
gtgaatgtcttcccccgccccccactcccagccccctgcatcctgctgaa
ggccccaaagttctggagataacaagtttgcctcatctctgccctcattg
agagccttcccaggctcctctggccgtcatgcaaggaggtttctgagaga
cgtgtcttacttttctcatagctcgtatctatgcctacagactgtgatca
aatgggatgcttcttagctaaagtccaaagctcagtagagtgttcacatt
ctccgttcttaggaaacacacgcatcagtcagcaccaagggggttgggcg
gagagggtcagctagaattcaaggagatgacccgtagagaaagagctctt
tcctcccacacctcccactggctttggcctcactgtatttttttttgcaa
agggctttgaagacacaagtgaaagaaatctcagtggtcggaagccagag
aaaggcagctgccaagggaagattagtcccaaggaacagagaaagaacac
ccgcgagcagggtgacgtcatacggaagaagggcagaagaagggttgtct
gagtcccggatcttctgccaccgttttaagcaacccatttattaaagttg
tgtctcttgctggcatgagagcaatggaagtgtcagtttgcttgtcagag
gctcctttgcctggagcatagatcagagcctggggtggcgtgttgccagg
cttctctccagcacagatgggaaggcaggggttattactctgccctggca
cttgccttcctgtgtggaaatatagaaaagtagaagacagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101655145_101655871
seq2: B6Ng01-149C05.b_48_774

seq1  GAATTCAACTTGACAAGAATACAGCTACCTTTCCTGTGCATTTCTGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGACAAGAATACAGCTACCTTTCCTGTGCATTTCTGTAAT  50

seq1  AGTTGTGGACTATTTCCCCTGGATAAAACATTCTGTTTTCCAGGCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGACTATTTCCCCTGGATAAAACATTCTGTTTTCCAGGCAAGGA  100

seq1  TGAGACTTATAAGGCTCAGAGAATGCACGAAAAAATTCACAAGACTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTATAAGGCTCAGAGAATGCACGAAAAAATTCACAAGACTGACA  150

seq1  GGCACCCTCCCCAAGACTCTATCTTCAACATACAAGTTCTAAATTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTCCCCAAGACTCTATCTTCAACATACAAGTTCTAAATTTCCAC  200

seq1  GGATTTGTCTAAAAGTTGAGCAGTAGACTTTGTTGTGGTTCAGGAATCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTCTAAAAGTTGAGCAGTAGACTTTGTTGTGGTTCAGGAATCGG  250

seq1  CACATAAACCATGCAAACAATGATCTCAGTCAAACAAGAATAGTTTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACCATGCAAACAATGATCTCAGTCAAACAAGAATAGTTTATTG  300

seq1  AGTGCGCACCCCAAGATTAATCAATCAGGAACACAAAAAAGGACTTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGCACCCCAAGATTAATCAATCAGGAACACAAAAAAGGACTTAGGA  350

seq1  GTCTAATTGGGATGCCAGTCTGTTCTTTTTTAAAAATTTTTAATATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTGGGATGCCAGTCTGTTCTTTTTTAAAAATTTTTAATATTATT  400

seq1  TTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCC  450

seq1  CCCAAACCGCCCACCCCCGCTACCCTACCAACCCATTCCCATTTTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCGCCCACCCCCGCTACCCTACCAACCCATTCCCATTTTTTTTG  500

seq1  GCCCTGGCATTCCCCTGTACTGGGGCATTTAAGTTTGCTTGTCCAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCATTCCCCTGTACTGGGGCATTTAAGTTTGCTTGTCCAATGGG  550

seq1  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATTTTTGATACATATGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATTTTTGATACATATGCAGC  600

seq1  TAGAGTCAAAAGCTCCGGGGTACTAGTTAGTTCATAACGTTGTTCTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCAAAAGCTCCGGGGTACTAGTTAGTTCATAACGTTGTTCTACCT  650

seq1  ATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCC  700

seq1  ATTGGGAGCCCTGTGATCCATCCAATA  727
      |||||||||||||||||||||||||||
seq2  ATTGGGAGCCCTGTGATCCATCCAATA  727

seq1: chr9_101764800_101765844
seq2: B6Ng01-149C05.g_67_1109 (reverse)

seq1  ACACTGTCTCCTACTTTTCTATAATTTCACACAGGAAGGCAAGTGGCCAG  50
      ||||||||| ||||||||||||| || ||||||||||||||||| |||||
seq2  ACACTGTCTTCTACTTTTCTATATTTCCACACAGGAAGGCAAGT-GCCAG  49

seq1  GGCAGGGTAATTACCCCTGGCCTTCCCATCTGTGCTGGAGAGAAGCCTGG  100
      ||||| ||||| |||||| |||||||||||||||||||||||||||||||
seq2  GGCAGAGTAATAACCCCT-GCCTTCCCATCTGTGCTGGAGAGAAGCCTGG  98

seq1  C-ACACGGCCACCCAGGCTCTGATCTATGCTCCAGGCAAAGGAGCCTCTG  149
      | ||||| |  |||||||||||||||||||||||||||||||||||||||
seq2  CAACACGCCACCCCAGGCTCTGATCTATGCTCCAGGCAAAGGAGCCTCTG  148

seq1  ACAAGCAAACTGACACTTCCATTGCTCTCATGCCAGCAAGAGACACAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAACTGACACTTCCATTGCTCTCATGCCAGCAAGAGACACAACT  198

seq1  TTAATTAAATGGGTTGCTTAAAACGGTGGCAGAAGATCCGGGACTCAGAC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAA-TAAATGGGTTGCTTAAAACGGTGGCAGAAGATCCGGGACTCAGAC  247

seq1  AACCCTTCTTCTGCCCTTCTTCCGTATGACGTCACCCTGCTCGCGGGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTTCTGCCCTTCTTCCGTATGACGTCACCCTGCTCGCGGGTGT  297

seq1  TCTTTCTCTGTTCCTTGGGACTAATCTTCCCTTGGCAGCTGCCTTTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGTTCCTTGGGACTAATCTTCCCTTGGCAGCTGCCTTTCTCT  347

seq1  GGCTTCCGACCACTGAGATTTCTTTCACTTGTGTCTTCAAAGCCCTTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGACCACTGAGATTTCTTTCACTTGTGTCTTCAAAGCCCTTTGC  397

seq1  AAAAAAAAATACAGTGAGGCCAAAGCCAGTGGGAGGTGTGGGAGGAAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATACAGTGAGGCCAAAGCCAGTGGGAGGTGTGGGAGGAAAGA  447

seq1  GCTCTTTCTCTACGGGTCATCTCCTTGAATTCTAGCTGACCCTCTCCGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTCTACGGGTCATCTCCTTGAATTCTAGCTGACCCTCTCCGCC  497

seq1  CAACCCCCTTGGTGCTGACTGATGCGTGTGTTTCCTAAGAACGGAGAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCTTGGTGCTGACTGATGCGTGTGTTTCCTAAGAACGGAGAATG  547

seq1  TGAACACTCTACTGAGCTTTGGACTTTAGCTAAGAAGCATCCCATTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTCTACTGAGCTTTGGACTTTAGCTAAGAAGCATCCCATTTGAT  597

seq1  CACAGTCTGTAGGCATAGATACGAGCTATGAGAAAAGTAAGACACGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTAGGCATAGATACGAGCTATGAGAAAAGTAAGACACGTCTC  647

seq1  TCAGAAACCTCCTTGCATGACGGCCAGAGGAGCCTGGGAAGGCTCTCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACCTCCTTGCATGACGGCCAGAGGAGCCTGGGAAGGCTCTCAAT  697

seq1  GAGGGCAGAGATGAGGCAAACTTGTTATCTCCAGAACTTTGGGGCCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGAGATGAGGCAAACTTGTTATCTCCAGAACTTTGGGGCCTTCA  747

seq1  GCAGGATGCAGGGGGCTGGGAGTGGGGGGCGGGGGAAGACATTCACATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGCAGGGGGCTGGGAGTGGGGGGCGGGGGAAGACATTCACATTT  797

seq1  CCAAATAGGTTTGTCCAGTTTCCAGTGGGCTGGCTCTCAGGGGGCAGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGGTTTGTCCAGTTTCCAGTGGGCTGGCTCTCAGGGGGCAGAGT  847

seq1  GAGACGTGGCCAGACACGCCTACATCACAGCCTGCTATTTGGAGTCTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGTGGCCAGACACGCCTACATCACAGCCTGCTATTTGGAGTCTGAG  897

seq1  CTCTGTTTATCTTTGAATTCAGTTGTTTTATATAAAAGTCTTACTAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTATCTTTGAATTCAGTTGTTTTATATAAAAGTCTTACTAGGCA  947

seq1  AGCTGACTCAGGCCAATGATCTCCCCATTCGCTGGGAATGTTGAGGTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTCAGGCCAATGATCTCCCCATTCGCTGGGAATGTTGAGGTAGG  997

seq1  TGAATTGGTGTGAGTTTGAGACCAACCTGTCCTACATAGTGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGTGTGAGTTTGAGACCAACCTGTCCTACATAGTGAATTC  1043