BAC Information

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BAC

Clone NameB6Ng01-149H02
Chromosome9 (Build37)
Map Location 113,628,141 - 113,796,762
singlet/doubletdoublet
Overlap geneClasp2
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
Downstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H02.bB6Ng01-149H02.g
ACCDH945780DH945781
length1,114880
definitionDH945780|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H02, 5' end.DH945781|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,628,141 - 113,629,246)(113,795,882 - 113,796,762)
sequence
gaattctgtttcccaatctgccagctgctgttttgtacaaatgacggtgt
cctttgccttatagaagcttttcattttcataaggtcccattaatcaatt
gttgatcttatagcctgggccattgaagttcatctctttaccagtgctca
agagatcttaacagcaaagtgtgagagggaaatttcttcttcttgtgtgt
cctctattccctgaaccacaagggggagcagaggcccaggaccgtgcaga
gagattagcatgactgagattgtcttggacttctgcagtcttcagagctg
tggctgactgctccctggcatccacaccctcctccttctccaacagaaag
gccagcattgtttctaaacactgagacaagcagaacagaatctccaggcg
gagaaggagggcaagcgacctcggtaaggagtgctgtgggtgggaaggct
gggcacacattttgttgggcccagaggatgatgtgtgcttgcctcagttt
gtgaagggcaagttaagccatccctgacccaaatagttcataccatcgtg
tcctaaacctgcatggaaatgcaactcttgggttggccaagctttaacaa
cttctgtaccctggatgacaagacaccctctctttcccgtcacccagggg
ttcctggttacccaggcacttttgtttcttttctgttgttttgatagaat
accctgacaaaagcaacagaggagagaaagggtttattttccctcaaaaa
ttccacgttgcagtctatgcttgtgggaaagtcttggtagcagaatgtga
cgccactagttctattacaacagcagtttaaagtaaggaattattgtgtt
gcatgctggttgctcatccgggacttctcccttctcacacagtttcagga
tccagggcacgttgtccattacaacactgggcctttccactaattaaccc
aatctaggccagcctggatccagattacgtacgcccaggtgatacaacac
tgtcacattgacagtcaaatgtaacctgagctcagtacccagaagacaaa
gggtggtagaaccggacaccccaactgttcttctgaacttccattctgtg
gccacaaaataaat
gaattcatttcagaaggcaatcaatatgctctcctttcttcaccaatgag
taaaggagatatgtatatgataatattctaggaggaataaaaattatatt
tcacaagatgaagtttaaaattaatggtccataaccactgtttatattta
cttttactgaatgatattaaacatcggaaagcacattggggtcgtagggg
tttttggtttttgtctttaaataatctcgagaattgggaattatttgaag
cctccaatggatcaatttgatatgtcacaaaagtggaattcttcaggaaa
gaaacacgtatctgggttcttacaattgaggcagcttcttttcatggaag
cctgctttattttaggtgtgccagccatcaaatgtgaaacagaagaacat
aatcaaattagatcaattagtagattaaaagcacatctccaaacagaatg
acagcctgcgtaactgcgaatagcatttcgtggattgcaaagggtccaac
actgcacggactcttaaggagagaaaacagagaaaatgggttaattccac
agtcatgcagtaaagttagcttttcaacaaatattgaaccaacttactct
ctagtgagagttccaacacaggggacagcatgcaaaaaggaaaaaagaaa
aaaaagaaaaacacacaaattagtcgccatcaatgcaaagttcctgtatg
ggagaaaaacactgaagaaataaaagtagctacaaatgtttttcaaagtt
ttctgaaaaaactcaaaatattttttaaacaagagttccatgtacaacat
agaggaaagcacgtgatttctctgcacgcttcattcatttttcttgtcaa
ggaaatttaaaaggggggaggggtggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113628141_113629246
seq2: B6Ng01-149H02.b_44_1157

seq1  GAATTCTGTTTCCCAATCTGCCAGCTGCTGTTTTGTACAAATGACGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTCCCAATCTGCCAGCTGCTGTTTTGTACAAATGACGGTGT  50

seq1  CCTTTGCCTTATAGAAGCTTTTCATTTTCATAAGGTCCCATTAATCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTTATAGAAGCTTTTCATTTTCATAAGGTCCCATTAATCAATT  100

seq1  GTTGATCTTATAGCCTGGGCCATTGAAGTTCATCTCTTTACCAGTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTTATAGCCTGGGCCATTGAAGTTCATCTCTTTACCAGTGCTCA  150

seq1  AGAGATCTTAACAGCAAAGTGTGAGAGGGAAATTTCTTCTTCTTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTTAACAGCAAAGTGTGAGAGGGAAATTTCTTCTTCTTGTGTGT  200

seq1  CCTCTATTCCCTGAACCACAAGGGGGAGCAGAGGCCCAGGACCGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTCCCTGAACCACAAGGGGGAGCAGAGGCCCAGGACCGTGCAGA  250

seq1  GAGATTAGCATGACTGAGATTGTCTTGGACTTCTGCAGTCTTCAGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGCATGACTGAGATTGTCTTGGACTTCTGCAGTCTTCAGAGCTG  300

seq1  TGGCTGACTGCTCCCTGGCATCCACACCCTCCTCCTTCTCCAACAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACTGCTCCCTGGCATCCACACCCTCCTCCTTCTCCAACAGAAAG  350

seq1  GCCAGCATTGTTTCTAAACACTGAGACAAGCAGAACAGAATCTCCAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATTGTTTCTAAACACTGAGACAAGCAGAACAGAATCTCCAGGCG  400

seq1  GAGAAGGAGGGCAAGCGACCTCGGTAAGGAGTGCTGTGGGTGGGAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAGGGCAAGCGACCTCGGTAAGGAGTGCTGTGGGTGGGAAGGCT  450

seq1  GGGCACACATTTTGTTGGGCCCAGAGGATGATGTGTGCTTGCCTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACATTTTGTTGGGCCCAGAGGATGATGTGTGCTTGCCTCAGTTT  500

seq1  GTGAAGGGCAAGTTAAGCCATCCCTGACCCAAATAGTTCATACCATCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGCAAGTTAAGCCATCCCTGACCCAAATAGTTCATACCATCGTG  550

seq1  TCCTAAACCTGCATGGAAATGCAACTCTTGGGTTGGCCAAGCTTTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACCTGCATGGAAATGCAACTCTTGGGTTGGCCAAGCTTTAACAA  600

seq1  CTTCTGTACCCTGGATGACAAGACACCCTCTCTTTCCCGTCACCCAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTACCCTGGATGACAAGACACCCTCTCTTTCCCGTCACCCAGGGG  650

seq1  TTCCTGGTTACCCAGGCACTTTTGTTTCTTTTCTGTTGTTTTGATAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTACCCAGGCACTTTTGTTTCTTTTCTGTTGTTTTGATAGAAT  700

seq1  ACCCTGACAAAAGCAACAGAGGAGAGAAAGGGTTTATTTTCCCTCAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACAAAAGCAACAGAGGAGAGAAAGGGTTTATTTTCCCTCAAAAA  750

seq1  TTCCACGTTGCAGTCTATGCTTGTGGGAAAGTCTTGGTAGCAGAATGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGTTGCAGTCTATGCTTGTGGGAAAGTCTTGGTAGCAGAATGTGA  800

seq1  CGCCACTAGTTCTATTACAACAGCAGTTAAAAGTAAGGAATTAATGTG-T  849
      |||||||||||||||||||||||||||| |||||||||||||| |||| |
seq2  CGCCACTAGTTCTATTACAACAGCAGTTTAAAGTAAGGAATTATTGTGTT  850

seq1  GCATGCTGG-TGCTCATCC-GGACTTCTCCCTTCTCACACAG-TTCAGGA  896
      ||||||||| ||||||||| |||||||||||||||||||||| |||||||
seq2  GCATGCTGGTTGCTCATCCGGGACTTCTCCCTTCTCACACAGTTTCAGGA  900

seq1  TCCAGAGCACGTTGTCACTTACAACACT-GGTCTTTCCACTAATTAACCC  945
      ||||| ||||||||||  |||||||||| || ||||||||||||||||||
seq2  TCCAGGGCACGTTGTCCATTACAACACTGGGCCTTTCCACTAATTAACCC  950

seq1  AATCTAGGCCAGCCT-GATCTAGA-TACGTCACGCCCAGGTGATACAACA  993
      ||||||||||||||| |||| ||| ||||| |||||||||||||||||||
seq2  AATCTAGGCCAGCCTGGATCCAGATTACGT-ACGCCCAGGTGATACAACA  999

seq1  CTGCCACATTGACAGTCAAAAGTAACCTGAGCTCAGTACCCAGAGACCAA  1043
      ||| |||||||||||||||| |||||||||||||||||||||||   |||
seq2  CTGTCACATTGACAGTCAAATGTAACCTGAGCTCAGTACCCAGAAGACAA  1049

seq1  AGGGTGGAAG-ACCAGACACCCCCAACTTGTCCTCTG-ACTTCCA-TCTG  1090
      ||||||| || ||| |||| ||||||||  || |||| ||||||| ||||
seq2  AGGGTGGTAGAACCGGACA-CCCCAACTGTTCTTCTGAACTTCCATTCTG  1098

seq1  TGCACACAAAATAAAT  1106
      ||  ||||||||||||
seq2  TGGCCACAAAATAAAT  1114

seq1: chr9_113795882_113796762
seq2: B6Ng01-149H02.g_66_945 (reverse)

seq1  TCCTCCACCCCTCCCCCCTTTTAAATTTCCTTGACAAG-AAAATGAATGA  49
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCTCCACCCCTCCCCCCTTTTAAATTTCCTTGACAAGAAAAATGAATGA  50

seq1  AGCGTGCAGAGAAATCACGTGCCTTTCCTCTATGTTGTACATGGAACTCT  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCGTGCAGAGAAATCACGTG-CTTTCCTCTATGTTGTACATGGAACTCT  99

seq1  TGTTTTAAAAATATTTTGAGTTTTTTCAGAAAACTTTGAAAAACATTTGT  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAAATATTTTGAGTTTTTTCAGAAAACTTTGAAAAACATTTGT  149

seq1  AGCTACTTTTATTTTCTTCAGTGTTTTTCTCCCATACAGGAACTTTGCAT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTTTA-TTTCTTCAGTGTTTTTCTCCCATACAGGAACTTTGCAT  198

seq1  TGATGGCGACTAATTTGTGTGTTTTTCTTTTTTTTCTTTTTTCCTTTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCGACTAATTTGTGTGTTTTTCTTTTTTTTCTTTTTTCCTTTTTG  248

seq1  CATGCTGTCCCCTGTGTTGGAACTCTCACTAGAGAGTAAGTTGGTTCAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCCCCTGTGTTGGAACTCTCACTAGAGAGTAAGTTGGTTCAAT  298

seq1  ATTTGTTGAAAAGCTAACTTTACTGCATGACTGTGGAATTAACCCATTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGAAAAGCTAACTTTACTGCATGACTGTGGAATTAACCCATTTT  348

seq1  CTCTGTTTTCTCTCCTTAAGAGTCCGTGCAGTGTTGGACCCTTTGCAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTCTCTCCTTAAGAGTCCGTGCAGTGTTGGACCCTTTGCAATC  398

seq1  CACGAAATGCTATTCGCAGTTACGCAGGCTGTCATTCTGTTTGGAGATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAATGCTATTCGCAGTTACGCAGGCTGTCATTCTGTTTGGAGATGT  448

seq1  GCTTTTAATCTACTAATTGATCTAATTTGATTATGTTCTTCTGTTTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATCTACTAATTGATCTAATTTGATTATGTTCTTCTGTTTCACA  498

seq1  TTTGATGGCTGGCACACCTAAAATAAAGCAGGCTTCCATGAAAAGAAGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGCTGGCACACCTAAAATAAAGCAGGCTTCCATGAAAAGAAGCT  548

seq1  GCCTCAATTGTAAGAACCCAGATACGTGTTTCTTTCCTGAAGAATTCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATTGTAAGAACCCAGATACGTGTTTCTTTCCTGAAGAATTCCAC  598

seq1  TTTTGTGACATATCAAATTGATCCATTGGAGGCTTCAAATAATTCCCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACATATCAAATTGATCCATTGGAGGCTTCAAATAATTCCCAAT  648

seq1  TCTCGAGATTATTTAAAGACAAAAACCAAAAACCCCTACGACCCCAATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGATTATTTAAAGACAAAAACCAAAAACCCCTACGACCCCAATGT  698

seq1  GCTTTCCGATGTTTAATATCATTCAGTAAAAGTAAATATAAACAGTGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCGATGTTTAATATCATTCAGTAAAAGTAAATATAAACAGTGGTT  748

seq1  ATGGACCATTAATTTTAAACTTCATCTTGTGAAATATAATTTTTATTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCATTAATTTTAAACTTCATCTTGTGAAATATAATTTTTATTCCT  798

seq1  CCTAGAATATTATCATATACATATCTCCTTTACTCATTGGTGAAGAAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATATTATCATATACATATCTCCTTTACTCATTGGTGAAGAAAGG  848

seq1  AGAGCATATTGATTGCCTTCTGAAATGAATTC  881
      ||||||||||||||||||||||||||||||||
seq2  AGAGCATATTGATTGCCTTCTGAAATGAATTC  880