BAC Information

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BAC

Clone NameB6Ng01-149P05
Chromosome9 (Build37)
Map Location 66,083,616 - 66,285,744
singlet/doubletdoublet
Overlap geneDapk2, Herc1
Upstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
Downstream geneFbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P05.bB6Ng01-149P05.g
ACCDH946152DH946153
length1,1801,062
definitionDH946152|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P05, 5' end.DH946153|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,083,616 - 66,084,795)(66,284,662 - 66,285,744)
sequence
gaattcagcatcttttcatgggttataaggcagggtgcagctagctcagg
agtgtacacatttatagaagatctactataatccaggagaagcacttaaa
taatgtgatatagtccctgccttgcaggagcctagtgtcttcagggagag
ggacatagtgaggcttagtgaggaggccatatgaaataaagcctattagg
aactctctaaccatgcccacctccaaggagtgagctcctagcctcaggca
aagtgaccttccatgtgttatagaactggacacagatttgagtaggttag
ggtagaagaataagggttgttacccttttggaagggacatggactgaccg
cctgttggtatcaggaaccatcaggcaagatgcccatagggaaataggcc
tcagaaccattcagaaacctcacttttgtgcatcatctcagtacaaatag
aggccttgtagagggtgtttgtatatggtcttgtatactcagtttatttt
agagagtttctcctctgagttgggatgtatcctttcctctctgcaccaac
caaatctagcctgagaactctgaaatagaaggtagtctccaggactgatg
gtatattaaagcaaaaataataaattataaggaatgattaaattgatatc
taatccagaagttcaagactctgaggaggcttttagtttttatgaacacg
actaagagggtaaatttcagagccaggaatcccaccaaaacccaagcttt
taagctcctttatgcccagagccatcctcagtgctgccctacactcatgg
tgtgatagagactgctgggcaagctttcataagggtggtcacggcaacac
tttgagggcatagactctcttagaatctagcatgcttatgcctttttcct
catttgatcctcatggcagcagaaagtgatgtcatatttttacaaaccaa
atacttggatcaagagataagtaaccattcaaatcacacaggtatcagat
gaacaactcacacttgttattcataaagctaatccaaggtccgggctggg
ctatacatttgttttggtttttctgagtacaagggctctgtaaggctagg
ctgcctcaaacttgcaattagccaaagatgatggtgggacacctggtatc
ctcctggcttagcctcctgtagagtgacaa
gaattccttaccaattgctatccagaaattggcattttaaaactggcaca
aaaaaaaaaatcaaaagtcaaagaagaaaaattcttgaaatcgagatcaa
gtgcccactattgttaaaattttagcattaccttaataaaatacatgcaa
cacataaaaatactctaagcaaaggcagcagacatacctgaagaacactt
ctgagatgctatgtttagaagcacttctgtccatttgggggaagccattt
ttgattgaattgcttttgaagacacaactctgcgaagaaaaactaaaaaa
tcccctagatggagttcagctgcatgttgtttcctaagagcagctgaaaa
gtgaagagataagtttatattttaattggaagacatcaggctaaggttta
ccttattcagcttacattttaattacattaagtacaaatctaattcccag
tctaggttttcaaaagggtaccaatttttgaaaactagaaaatgagaaaa
gataaaaatttaaatgaacctggaatgaaacatctttatatgtatggatg
agaagcataagcatgctagaagagcacacatatacacacattctttgttt
aattccttttcacatttacttatcctgggacagttccatgcagagaagaa
ctagaattgtgctaggagggcaacaagatagaatgccaggcctaaggaag
aacatatgaacatctgcaacaatctggatacaagtatccacagtgctact
ttcagagatattctggaatgctagttaaggataggagcgaaaactcttgt
gaaagagaggagacctctggaaaagaacatgcctgacacagacagccagt
ttcaagttttacaggaagctgcatgcagcataggaaaacttctgtctgct
gtgatgggtgaacaagactatgacagactaaactgctgcagacactagag
agaaacgagactactttacatctcctcaacagtactgtctcattattata
caacattttttatatattatcaagaccaggagtatcagtctctctctata
cctctgtctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66083616_66084795
seq2: B6Ng01-149P05.b_51_1230

seq1  GAATTCAGCATCTTTTCATGGGTTATAAGGCAGGGTGCAGCTAGCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCTTTTCATGGGTTATAAGGCAGGGTGCAGCTAGCTCAGG  50

seq1  AGTGTACACATTTATAGAAGATCTACTATAATCCAGGAGAAGCACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACACATTTATAGAAGATCTACTATAATCCAGGAGAAGCACTTAAA  100

seq1  TAATGTGATATAGTCCCTGCCTTGCAGGAGCCTAGTGTCTTCAGGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATATAGTCCCTGCCTTGCAGGAGCCTAGTGTCTTCAGGGAGAG  150

seq1  GGACATAGTGAGGCTTAGTGAGGAGGCCATATGAAATAAAGCCTATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGTGAGGCTTAGTGAGGAGGCCATATGAAATAAAGCCTATTAGG  200

seq1  AACTCTCTAACCATGCCCACCTCCAAGGAGTGAGCTCCTAGCCTCAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTAACCATGCCCACCTCCAAGGAGTGAGCTCCTAGCCTCAGGCA  250

seq1  AAGTGACCTTCCATGTGTTATAGAACTGGACACAGATTTGAGTAGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCTTCCATGTGTTATAGAACTGGACACAGATTTGAGTAGGTTAG  300

seq1  GGTAGAAGAATAAGGGTTGTTACCCTTTTGGAAGGGACATGGACTGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGAATAAGGGTTGTTACCCTTTTGGAAGGGACATGGACTGACCG  350

seq1  CCTGTTGGTATCAGGAACCATCAGGCAAGATGCCCATAGGGAAATAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGTATCAGGAACCATCAGGCAAGATGCCCATAGGGAAATAGGCC  400

seq1  TCAGAACCATTCAGAAACCTCACTTTTGTGCATCATCTCAGTACAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCATTCAGAAACCTCACTTTTGTGCATCATCTCAGTACAAATAG  450

seq1  AGGCCTTGTAGAGGGTGTTTGTATATGGTCTTGTATACTCAGTTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTAGAGGGTGTTTGTATATGGTCTTGTATACTCAGTTTATTTT  500

seq1  AGAGAGTTTCTCCTCTGAGTTGGGATGTATCCTTTCCTCTCTGCACCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTTCTCCTCTGAGTTGGGATGTATCCTTTCCTCTCTGCACCAAC  550

seq1  CAAATCTAGCCTGAGAACTCTGAAATAGAAGGTAGTCTCCAGGACTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTAGCCTGAGAACTCTGAAATAGAAGGTAGTCTCCAGGACTGATG  600

seq1  GTATATTAAAGCAAAAATAATAAATTATAAGGAATGATTAAATTGATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAAGCAAAAATAATAAATTATAAGGAATGATTAAATTGATATC  650

seq1  TAATCCAGAAGTTCAAGACTCTGAGGAGGCTTTTAGTTTTTATGAACACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGAAGTTCAAGACTCTGAGGAGGCTTTTAGTTTTTATGAACACG  700

seq1  ACTAAGAGGGTAAATTTCAGAGCCAGGAATCCCACCAAAACCCAAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGGGTAAATTTCAGAGCCAGGAATCCCACCAAAACCCAAGCTTT  750

seq1  TAAGCTCCTTTATGCCCAGAGCCATCCTCAGTGCTGCCCTACACTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCTTTATGCCCAGAGCCATCCTCAGTGCTGCCCTACACTCATGG  800

seq1  TGTGATAGAGACTGCTGGGCAAGCTTTCATAAGGGTGGTCACGGCAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGAGACTGCTGGGCAAGCTTTCATAAGGGTGGTCACGGCAACAC  850

seq1  TTTGAGGGCATAGTACTCTC-TAGAATCTAGCATGCTTATGCCTTTTTCC  899
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TTTGAGGGCATAG-ACTCTCTTAGAATCTAGCATGCTTATGCCTTTTTCC  899

seq1  TCATTTGATCCTCATGGCAGCAGAAGGTGATGTCATATTTTTACAAACCA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATTTGATCCTCATGGCAGCAGAAAGTGATGTCATATTTTTACAAACCA  949

seq1  AATACTTGGGATTCAAAGAGATTAAGTAACCATTCAAAATCACACAAGTA  999
      ||||||| ||||   |||||| ||||||||||||| |||||||||| |||
seq2  AATACTT-GGAT--CAAGAGA-TAAGTAACCATTC-AAATCACACAGGTA  994

seq1  TCAGATG-ACAACTCAGCACTTGTTATTCATACAGCTAATCCAAGGTCCG  1048
      ||||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  TCAGATGAACAACTCA-CACTTGTTATTCATAAAGCTAATCCAAGGTCCG  1043

seq1  GGCTGGGCTATACATTTTGTTTTGG-TTTTCTGAG-ACAAGGGCTCATGT  1096
      |||||||||||||| |||||||||| ||||||||| |||||||||| |||
seq2  GGCTGGGCTATACA-TTTGTTTTGGTTTTTCTGAGTACAAGGGCTC-TGT  1091

seq1  -AGGCTAGGCTGGCTTCAAACTTGCCATATAGCCAAAGATGACTGT-GGA  1144
       |||||||||| || |||||||||| || |||||||||||||  || |||
seq2  AAGGCTAGGCT-GCCTCAAACTTGCAAT-TAGCCAAAGATGATGGTGGGA  1139

seq1  CACCTG--ATCCTCCT-GCTTATGCCTCCT---GAGTGACAA  1180
      ||||||  |||||||| ||||| |||||||   |||||||||
seq2  CACCTGGTATCCTCCTGGCTTA-GCCTCCTGTAGAGTGACAA  1180

seq1: chr9_66284662_66285744
seq2: B6Ng01-149P05.g_67_1128 (reverse)

seq1  GAAAGACAGAGGTATAGAGGAGAGACTGATACTTCTGTGTTCTTTGGATT  50
      |||||||||||||||||| |||||||||||||| |  || ||||  || |
seq2  GAAAGACAGAGGTATAGA-GAGAGACTGATACTCC--TGGTCTT--GA-T  44

seq1  AATATTATAAAAAATGTTTTGTATTAAATAATGAGACAAGGTACTGTTTG  100
      |||| |||||||||||  ||||||  ||||||||||||  ||||||||  
seq2  AATA-TATAAAAAATG--TTGTAT--AATAATGAGACA--GTACTGTT--  85

seq1  GAGGAGATGTAAAGTAGTTCTTCGTTTCCTCTCTAGTTGTCTGCAGCAGT  150
      ||||||||||||||||||   |||||| |||||||| |||||||||||||
seq2  GAGGAGATGTAAAGTAGT--CTCGTTT-CTCTCTAG-TGTCTGCAGCAGT  131

seq1  TTAGTTCTGTCATAGTCTTGTTCACCCATCACAGCAGACAGAAGTTTTCC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAG-TCTGTCATAGTCTTGTTCACCCATCACAGCAGACAGAAGTTTTCC  180

seq1  TATGCTGCATGCAGCTTCCTGTAAAACTTGATACTGGCTGTCTGTTGTCA  250
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TATGCTGCATGCAGCTTCCTGTAAAACTTGAAACTGGCTGTCTG-TGTCA  229

seq1  GGCATGTTCTTTTCCAGAGGTCTCCTCTCTTTCACAAGAGTTTTCGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTCTTTTCCAGAGGTCTCCTCTCTTTCACAAGAGTTTTCGCTCC  279

seq1  TATCCTTAACTAGCATTCCAGAATATCTCTGAAAGTAGCACTGTGGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAACTAGCATTCCAGAATATCTCTGAAAGTAGCACTGTGGATAC  329

seq1  TTGTATCCAGATTGTTGCAGATGTTCATATGTTCTTCCTTAGGCCTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCAGATTGTTGCAGATGTTCATATGTTCTTCCTTAGGCCTGGCA  379

seq1  TTCTATCTTGTTGCCCTCCTAGCACAATTCTAGTTCTTCTCTGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTGTTGCCCTCCTAGCACAATTCTAGTTCTTCTCTGCATGGAA  429

seq1  CTGTCCCAGGATAAGTAAATGTGAAAAGGAATTAAACAAAGAATGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAGGATAAGTAAATGTGAAAAGGAATTAAACAAAGAATGTGTGT  479

seq1  ATATGTGTGCTCTTCTAGCATGCTTATGCTTCTCATCCATACATATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGCTCTTCTAGCATGCTTATGCTTCTCATCCATACATATAAAG  529

seq1  ATGTTTCATTCCAGGTTCATTTAAATTTTTATCTTTTCTCATTTTCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATTCCAGGTTCATTTAAATTTTTATCTTTTCTCATTTTCTAGT  579

seq1  TTTCAAAAATTGGTACCCTTTTGAAAACCTAGACTGGGAATTAGATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATTGGTACCCTTTTGAAAACCTAGACTGGGAATTAGATTTGT  629

seq1  ACTTAATGTAATTAAAATGTAAGCTGAATAAGGTAAACCTTAGCCTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTAATTAAAATGTAAGCTGAATAAGGTAAACCTTAGCCTGATG  679

seq1  TCTTCCAATTAAAATATAAACTTATCTCTTCACTTTTCAGCTGCTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATTAAAATATAAACTTATCTCTTCACTTTTCAGCTGCTCTTAG  729

seq1  GAAACAACATGCAGCTGAACTCCATCTAGGGGATTTTTTAGTTTTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACATGCAGCTGAACTCCATCTAGGGGATTTTTTAGTTTTTCTTC  779

seq1  GCAGAGTTGTGTCTTCAAAAGCAATTCAATCAAAAATGGCTTCCCCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTGTGTCTTCAAAAGCAATTCAATCAAAAATGGCTTCCCCCAAA  829

seq1  TGGACAGAAGTGCTTCTAAACATAGCATCTCAGAAGTGTTCTTCAGGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAGTGCTTCTAAACATAGCATCTCAGAAGTGTTCTTCAGGTAT  879

seq1  GTCTGCTGCCTTTGCTTAGAGTATTTTTATGTGTTGCATGTATTTTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGCCTTTGCTTAGAGTATTTTTATGTGTTGCATGTATTTTATTA  929

seq1  AGGTAATGCTAAAATTTTAACAATAGTGGGCACTTGATCTCGATTTCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGCTAAAATTTTAACAATAGTGGGCACTTGATCTCGATTTCAAG  979

seq1  AATTTTTCTTCTTTGACTTTTGATTTTTTTTTTTGTGCCAGTTTTAAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTCTTTGACTTTTGATTTTTTTTTTTGTGCCAGTTTTAAAAT  1029

seq1  GCCAATTTCTGGATAGCAATTGGTAAGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  GCCAATTTCTGGATAGCAATTGGTAAGGAATTC  1062