BAC Information

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BAC

Clone NameB6Ng01-150B01
Chromosome9 (Build37)
Map Location 28,416,677 - 28,546,106
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150B01.bB6Ng01-150B01.g
ACCDH946239DH946240
length1,1051,139
definitionDH946239|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B01, 5' end.DH946240|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,416,677 - 28,417,797)(28,544,970 - 28,546,106)
sequence
gaattcaaagcaactggagcttctagtttcactggaggctccctcaggta
acagtttcttacaaatcaatcgtctctcaagtttttttctactttgaatg
tgtctccatgccccatgaaagattcttgaggttctacttctaactttcct
tgtacccctcctgttttcctcaagatccattttcaacatcattggttcaa
atgctgtcttaagctgatgaccaccacatgcacctcccaagattagatca
ctctcctgagatgggcttgtgcagttttagaggaatccagatttccactt
ccaaatcctccgaagcctccccatctgtcatttcctctgtaacttctttg
tctatttactgaagtcagtctggttagaacttagggtttgtctctgaatc
ttttcctcacgtgtcacccatgcttgagcagtcattgacaccagtcatgt
ttgctattaaataatattaacattggtttcatcctgtaaacttatccaca
ggtatgatgtgatttcatcatattcagactctgttaccactttctctatc
ctctaataatctccctcctcttttacatcacattgatttattcaataaag
ttttgaaatcattatttttttaaaatttcatattataacttaagtaaggc
ttttgttgtctctcactcgaatttcaaaggaaacgatgtcttttctagga
atcaatccacagacgaaacctccttatctcttttcatatcttggcatgga
ctttcatgattcctcacaaatgcagaccaattctctttgtgtacagaatg
accttactgaaacagtctctgttaccacatgtttagcttctcgggtcact
agcaaattaaaattagttgtttggtgcattggcagtctgacctatgcttt
ggtagccaccctcacggttcactccttctccacccttatgacccacatcc
ctacttaataacattgttaagcatagtgcttgtcaatccctacacttgtt
tgacagttttgtctttctctaatgctcttctagaagatctgctgaaatct
acatttaactgctactcatttgcagaacagttcaaggtcatgggttggga
aactc
gaattcacaaacagaagccggcttttcagaaacacacatctcagctgagc
ctcctgcacagatgtcagatttctgcagaagcctcccggaggctcagaga
gcctacaatggactatttttagttctgataattaatattggaggagaaag
ggaggaggatgaaaatgtagctccagcaaaaaaggcaattaccatctatc
ccatatattgtcacctatgagatgtgttggtttcaaagaaataataaaga
gaaatgcgcatgaacccattgctttctgtatcacacctcccatgaagtgg
atgtttaattcttccctttctgaattctggaaatagcttggtctcataag
ttaacacttgcagctagggctgtgccagcctgcattttactatgacaaag
actgtgtctgtttcccaatgttgaaaaataagagctcgcttctctcacac
attcccagtgaattgggatcaacaactgtcaaaaagaaagccatggtcag
ggtcctcccattcctcctaactggtcccagagtctcattttaaaccattc
ttccaatcccttaccacttcactcaaatttgtagttcttatgcagatctc
tccattgcccgtcaaatcccttaagaaaagatacttttgtacctattaat
gaaaacccagtccatgatgattcataaaacaacatgacgcctctgttgcc
aggaaactctgggaagggtagtaggaaccaccatagtgccagcaaatgtc
tgtgcagcaagcaccttgctagggctagtctacatttagtgctgaagctt
aggagagtggagagctgctacaggagtgaccagccacagtgaggtggttt
atcaagtgaaggtacttgctgcctacaccgatgacttgagtttgattctc
agaacctacgaggtaagaagaaaagccaaatccattttctgtagtgtcac
ctttgagcaaaacacatgttgacaccttggtgtctggagagcccccaccc
aagatataccctacaacacctaataataaataaattaattaatggcatgg
gggaaaagaaacactgactattcaaaatgccggaattcagcacttcctaa
attattttggggtctctaaattctgtgaaactggaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28416677_28417797
seq2: B6Ng01-150B01.b_45_1149

seq1  GAATTCAAAGCAACTGGAGCTTCTAGTTTCACTGGAGGCTCCCTCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAACTGGAGCTTCTAGTTTCACTGGAGGCTCCCTCAGGTA  50

seq1  ACAGTTTCTTACAAATCAATCGTCTCTCAAGTTTTTTTCTACTTTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTACAAATCAATCGTCTCTCAAGTTTTTTTCTACTTTGAATG  100

seq1  TGTCTCCATGCCCCATGAAAGATTCTTGAGGTTCTACTTCTAACTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATGCCCCATGAAAGATTCTTGAGGTTCTACTTCTAACTTTCCT  150

seq1  TGTACCCCTCCTGTTTTCCTCAAGATCCATTTTCAACATCATTGGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCCTCCTGTTTTCCTCAAGATCCATTTTCAACATCATTGGTTCAA  200

seq1  ATGCTGTCTTAAGCTGATGACCACCACATGCACCTCCCAAGATTAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTAAGCTGATGACCACCACATGCACCTCCCAAGATTAGATCA  250

seq1  CTCTCCTGAGATGGGCTTGTGCAGTTTTAGAGGAATCCAGATTTCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAGATGGGCTTGTGCAGTTTTAGAGGAATCCAGATTTCCACTT  300

seq1  CCAAATCCTCCGAAGCCTCCCCATCTGTCATTTCCTCTGTAACTTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTCCGAAGCCTCCCCATCTGTCATTTCCTCTGTAACTTCTTTG  350

seq1  TCTATTTACTGAAGTCAGTCTGGTTAGAACTTAGGGTTTGTCTCTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACTGAAGTCAGTCTGGTTAGAACTTAGGGTTTGTCTCTGAATC  400

seq1  TTTTCCTCACGTGTCACCCATGCTTGAGCAGTCATTGACACCAGTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCACGTGTCACCCATGCTTGAGCAGTCATTGACACCAGTCATGT  450

seq1  TTGCTATTAAATAATATTAACATTGGTTTCATCCTGTAAACTTATCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTAAATAATATTAACATTGGTTTCATCCTGTAAACTTATCCACA  500

seq1  GGTATGATGTGATTTCATCATATTCAGACTCTGTTACCACTTTCTCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGATGTGATTTCATCATATTCAGACTCTGTTACCACTTTCTCTATC  550

seq1  CTCTAATAATCTCCCTCCTCTTTTACATCACATTGATTTATTCAATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATAATCTCCCTCCTCTTTTACATCACATTGATTTATTCAATAAAG  600

seq1  TTTTGAAATCATTATTTTTTTAAAATTTCATATTATAACTTAAGTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATCATTATTTTTTTAAAATTTCATATTATAACTTAAGTAAGGC  650

seq1  TTTTGTTGTCTCTCACTCGAATTTCAAAGGAAACGATGTCTTTTCTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTCTCTCACTCGAATTTCAAAGGAAACGATGTCTTTTCTAGGA  700

seq1  ATCAATCCACAGACGAAACCTCCTTATCTCTTTTCATATCTTGGCATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCACAGACGAAACCTCCTTATCTCTTTTCATATCTTGGCATGGA  750

seq1  CTTTCATGATTCCTCACAAATGCAGACCAATTCTCTTTGTGTACAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGATTCCTCACAAATGCAGACCAATTCTCTTTGTGTACAGAATG  800

seq1  ACCTTACTGAAACAGTCTCTGTTACCACATGTTTAGCTTCTCGGGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTGAAACAGTCTCTGTTACCACATGTTTAGCTTCTCGGGTCACT  850

seq1  AGCAAATTAAAATTAGTTGTTTGGTGCATTTGGCAGTCTGACCTATGCTT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCAAATTAAAATTAGTTGTTTGGTGCA-TTGGCAGTCTGACCTATGCTT  899

seq1  TGGTAGCCACCCTCACGGTTCACTCCTTCTCCACCCCTTATGACCCACAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTAGCCACCCTCACGGTTCACTCCTTCTCCA-CCCTTATGACCCACAT  948

seq1  CCCTACTTAATAACATTGTTAAGCATAGTTGCTTGTCAATCCCTACACTT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCTACTTAATAACATTGTTAAGCATAG-TGCTTGTCAATCCCTACACTT  997

seq1  GTTTGACAGTTTTGTTCTTTCTCTAATTGCTCTTTCTAGAAGATCCTGCC  1050
      |||||||||||||| ||||||||||| ||||| ||||||||||| ||| |
seq2  GTTTGACAGTTTTG-TCTTTCTCTAA-TGCTC-TTCTAGAAGAT-CTG-C  1042

seq1  TGAAATTCTAACCATTTAACTGCCTACTCATTTGCAGGAACAAGTTCAAA  1100
      ||||| ||||  |||||||||| ||||||||||||| |||| ||||| ||
seq2  TGAAA-TCTA--CATTTAACTG-CTACTCATTTGCA-GAAC-AGTTC-AA  1085

seq1  GGTCATGGTTTTGGGGAACTC  1121
      ||||||||  ||||| |||||
seq2  GGTCATGG-GTTGGGAAACTC  1105

seq1: chr9_28544970_28546106
seq2: B6Ng01-150B01.g_69_1207 (reverse)

seq1  TTATTCAAGTTTCACAGAATTGAGGAGACCACAAAATACATTTAAGAAGT  50
      |||||| |||||||||||||| | |||||| ||||||| ||||| |||||
seq2  TTATTCCAGTTTCACAGAATTTA-GAGACCCCAAAATA-ATTTAGGAAGT  48

seq1  GCTGAATT-CAGAAATTTAAATGGTCAGTG-TTCTTTTCCCCATTGCATT  98
      |||||||| | | | ||| ||| ||||||| |||||||||||  |||  |
seq2  GCTGAATTCCGGCATTTTGAATAGTCAGTGTTTCTTTTCCCCCATGCCAT  98

seq1  TATTTATTTTTATTTATTTATTTAGTGTTTGTGTGTATATCTTTGTGTGT  148
      || |||  |||||||| |||||  |||||   | ||||||| ||| ||| 
seq2  TAATTA-ATTTATTTA-TTATTAGGTGTTGTAGGGTATATC-TTGGGTGG  145

seq1  GTGCTCT-CAGACAC--AGGTGTCAACATGTGTTTTGCTCAAA-GTGACA  194
      | ||||| |||||||  |||||||||||||||||||||||||| ||||||
seq2  GGGCTCTCCAGACACCAAGGTGTCAACATGTGTTTTGCTCAAAGGTGACA  195

seq1  CTAACAG-AAATGGATTTGGCTTTTCTTC-TACCTCGTAGGTTCTGAGAA  242
      || |||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CT-ACAGAAAATGGATTTGGCTTTTCTTCTTACCTCGTAGGTTCTGAGAA  244

seq1  TCAAACTCAAGTCATCGGTGTAGGCAGCAAGTACCTTCACTTGATAAACC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAAGTCATCGGTGTAGGCAGCAAGTACCTTCACTTGATAAACC  294

seq1  ACCTCACTGTGGCTGGTCACTCCTTGTAGCAGCTCTCCACTCTCCTAAGC  342
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTCACTGTGGCTGGTCACTCC-TGTAGCAGCTCTCCACTCTCCTAAGC  343

seq1  TTCAGCACT-AATGTAGACTAGCCCTAGCAAGGTGCTTGCTGCACAGACA  391
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACTAAATGTAGACTAGCCCTAGCAAGGTGCTTGCTGCACAGACA  393

seq1  TTTGCTGGCACTATGGTGGTTCCTACTACCCTTCCCAGAGTTTCCTGGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGCACTATGGTGGTTCCTACTACCCTTCCCAGAGTTTCCTGGCA  443

seq1  ACAGAGGCGTCATGTTGTTTTATGAATCATCATGGACTGGGTTTTCATTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCGTCATGTTGTTTTATGAATCATCATGGACTGGGTTTTCATTA  493

seq1  ATAGGTACAAAAGTATCTTTTCTTAAGGGATTTGACGGGCAATGGAGAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACAAAAGTATCTTTTCTTAAGGGATTTGACGGGCAATGGAGAGA  543

seq1  TCTGCATAAGAACTACAAATTTGAGTGAAGTGGTAAGGGATTGGAAGAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAAGAACTACAAATTTGAGTGAAGTGGTAAGGGATTGGAAGAAT  593

seq1  GGTTTAAAATGAGACTCTGGGACCAGTTAGGAGGAATGGGAGGACCCTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAATGAGACTCTGGGACCAGTTAGGAGGAATGGGAGGACCCTGA  643

seq1  CCATGGCTTTCTTTTTGACAGTTGTTGATCCCAATTCACTGGGAATGTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTTTCTTTTTGACAGTTGTTGATCCCAATTCACTGGGAATGTGT  693

seq1  GAGAGAAGCGAGCTCTTATTTTTCAACATTGGGAAACAGACACAGTCTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGCGAGCTCTTATTTTTCAACATTGGGAAACAGACACAGTCTTT  743

seq1  GTCATAGTAAAATGCAGGCTGGCACAGCCCTAGCTGCAAGTGTTAACTTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTAAAATGCAGGCTGGCACAGCCCTAGCTGCAAGTGTTAACTTA  793

seq1  TGAGACCAAGCTATTTCCAGAATTCAGAAAGGGAAGAATTAAACATCCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAAGCTATTTCCAGAATTCAGAAAGGGAAGAATTAAACATCCAC  843

seq1  TTCATGGGAGGTGTGATACAGAAAGCAATGGGTTCATGCGCATTTCTCTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGAGGTGTGATACAGAAAGCAATGGGTTCATGCGCATTTCTCTT  893

seq1  TATTATTTCTTTGAAACCAACACATCTCATAGGTGACAATATATGGGATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCTTTGAAACCAACACATCTCATAGGTGACAATATATGGGATA  943

seq1  GATGGTAATTGCCTTTTTTGCTGGAGCTACATTTTCATCCTCCTCCCTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAATTGCCTTTTTTGCTGGAGCTACATTTTCATCCTCCTCCCTTT  993

seq1  CTCCTCCAATATTAATTATCAGAACTAAAAATAGTCCATTGTAGGCTCTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAATATTAATTATCAGAACTAAAAATAGTCCATTGTAGGCTCTC  1043

seq1  TGAGCCTCCGGGAGGCTTCTGCAGAAATCTGACATCTGTGCAGGAGGCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCCGGGAGGCTTCTGCAGAAATCTGACATCTGTGCAGGAGGCTC  1093

seq1  AGCTGAGATGTGTGTTTCTGAAAAGCCGGCTTCTGTTTGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATGTGTGTTTCTGAAAAGCCGGCTTCTGTTTGTGAATTC  1139