BAC Information

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BAC

Clone NameB6Ng01-150C17
Chromosome9 (Build37)
Map Location 9,588,310 - 9,745,833
singlet/doubletdoublet
Overlap geneCntn5
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150C17.bB6Ng01-150C17.g
ACCDH946319DH946320
length1,0731,197
definitionDH946319|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C17, 5' end.DH946320|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,588,310 - 9,589,387)(9,744,647 - 9,745,833)
sequence
gaattcagcagtgaatctatttggcccatgagattttctttattaggagc
acattgaattttttaccttcattctaaaaatttcatgtattacggatgct
tcacctgtatataagactatatgcatgcaatgcctgtggacattagatga
gaaccatcaggttccctgggactggaggtacagacagttgtgagccactg
tactgccattgagaattgagcccagtcttctggaagagcatctagtgctc
ttaactgctgagccacctgtccaaacttgggagacttttttttttttttt
tttttttttaccgctgttcaattgcactgtttattgtggacttgtctaag
tactttatatttttaaatgtaattttggtaagtcatatattctgtaaatg
tctatccagtccatttgatttcctgtgcatggtggctaaaatttttaaat
caatttttagttctttaacttacctattggtaagggttgtgtgttgaagt
tacctactattattatgtctgagaatttatcaaatacttccatattttca
gatttgtttttggaatatcagctttcatagtattccatgatgattctcca
gacttccctgtagtcaggtgaaatgtttctttttaagctctaatgttatt
aatttgggttttctttctcttttgggttagctatgcagttttcaatattg
tttacttttttcaaggaactagttccttgcttcattgaatagatgtgctg
ttctaggtcccatctcactatttcctgacttaatctgtcttatatatgtc
tgtcttctctttgggagtttcacttattcttgtttttccaaacttgtgag
gtggatcataggttatttgtgatttagatgttaaaacctacatgttgcct
gtctagtgtgtcattttgtgctgttactaatggataaggaaactttctca
tgctccaattgatggcagattctgtttatgttctgtgctttgtgttcttg
gaatcatccaaaatagatgtcagaaaaaactgcctgtataggttagcccc
aatagcttgggctggacaactgc

gaattccttatttttgttaattaaaacaaaatttgagcatgggccttcta
actaagtatatcttagaatgggcttacatattcatgttgtaaaattggct
tataaattcttttgtctgcaaggaaaatccaaaaattaagtaagaataat
ctgtatatttggaaaaatatgaaactatatttgagaggggcaatttcatc
tttgagtcccatttccaattaagtgaattaaatgtactttaaaaatgtga
tgttcttcatgctactgaaaattcttatgtgatctgttttttttctgtgt
gtatttatgattatcaaatcacctatgactataaacatcactgatctttc
ttttataactccaggatgtctctgaaacatttaccattggtttctattgt
ctgtctataggtatgttttctatgagccaattggttgattaaattctgca
gtttactagcttgtcaagtattttattgaattctttgatgtgatgatttt
actagaaaatccattccagtggtatcctcctcttattcagcattggctgt
ctttaaatatcgctattattttccctgtgattcatgtattttccttgtca
caatctatacccatggctccagcaacaatattttttataaaaggatggca
gtgaagctgttaaatattcttacctggaaagaaaaacatctttaatctct
tcaatattcaaaaccaaaattcttgacaaaattgtttgtttttgaaacta
tgtttcaactaatgtttttaacattatattaacattaacattttaacagt
atagtccttatgaaaaaacaataaatttagagttacctaattaattatat
tataaattgatatacaagttatgcttaaaatactgaaacatgaggctggt
tagatggcacaatggcacttgctgtgtaagcttggagacctgagttcaat
gctcatcacccacatgggacctggctgcacatgcctgtaattacagaatt
gagggacagagacaggtagaatcgttgaaagctcaaatcccagacctcca
ccaagtgggtgataattccagttcatgacatgcctcatctcaaggcaagt
gaggaactggagtggttagagaagtcagcttaattcaatttctcgggtgc
ctacaagtgtgtggttagtgcacaggcatacctccatatggcacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9588310_9589387
seq2: B6Ng01-150C17.b_47_1119

seq1  GAATTCAGCAGTGAATCTATTTGGCCCATGAGATTTTCTTTATTAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTGAATCTATTTGGCCCATGAGATTTTCTTTATTAGGAGC  50

seq1  ACATTGAATTTTTTACCTTCATTCTAAAAATTTCATGTATTACGGATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAATTTTTTACCTTCATTCTAAAAATTTCATGTATTACGGATGCT  100

seq1  TCACCTGTATATAAGACTATATGCATGCAATGCCTGTGGACATTAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTATATAAGACTATATGCATGCAATGCCTGTGGACATTAGATGA  150

seq1  GAACCATCAGGTTCCCTGGGACTGGAGGTACAGACAGTTGTGAGCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCAGGTTCCCTGGGACTGGAGGTACAGACAGTTGTGAGCCACTG  200

seq1  TACTGCCATTGAGAATTGAGCCCAGTCTTCTGGAAGAGCATCTAGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCATTGAGAATTGAGCCCAGTCTTCTGGAAGAGCATCTAGTGCTC  250

seq1  TTAACTGCTGAGCCACCTGTCCAAACTTGGGAGACTTTTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTGAGCCACCTGTCCAAACTTGGGAGACTTTTTTTTTTTTTTT  300

seq1  TTTTTTTTTACCGCTGTTCAATTGCACTGTTTATTGTGGACTTGTCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTACCGCTGTTCAATTGCACTGTTTATTGTGGACTTGTCTAAG  350

seq1  TACTTTATATTTTTAAATGTAATTTTGGTAAGTCATATATTCTGTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATATTTTTAAATGTAATTTTGGTAAGTCATATATTCTGTAAATG  400

seq1  TCTATCCAGTCCATTTGATTTCCTGTGCATGGTGGCTAAAATTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCAGTCCATTTGATTTCCTGTGCATGGTGGCTAAAATTTTTAAAT  450

seq1  CAATTTTTAGTTCTTTAACTTACCTATTGGTAAGGGTTGTGTGTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTAGTTCTTTAACTTACCTATTGGTAAGGGTTGTGTGTTGAAGT  500

seq1  TACCTACTATTATTATGTCTGAGAATTTATCAAATACTTCCATATTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTATTATTATGTCTGAGAATTTATCAAATACTTCCATATTTTCA  550

seq1  GATTTGTTTTTGGAATATCAGCTTTCATAGTATTCCATGATGATTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTTTGGAATATCAGCTTTCATAGTATTCCATGATGATTCTCCA  600

seq1  GACTTCCCTGTAGTCAGGTGAAATGTTTCTTTTTAAGCTCTAATGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCTGTAGTCAGGTGAAATGTTTCTTTTTAAGCTCTAATGTTATT  650

seq1  AATTTGGGTTTTCTTTCTCTTTTGGGTTAGCTATGCAGTTTTCAATATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGTTTTCTTTCTCTTTTGGGTTAGCTATGCAGTTTTCAATATTG  700

seq1  TTTACTTTTTTCAAGGAACTAGTTCCTTGCTTCATTGAATAGATGTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTCAAGGAACTAGTTCCTTGCTTCATTGAATAGATGTGCTG  750

seq1  TTCTAGGTCCCATCTCACTATTTCCTGACTTAATCTGTCTTATATATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTCCCATCTCACTATTTCCTGACTTAATCTGTCTTATATATGTC  800

seq1  TGTCTTCTCTTTGGGAGTTTCACTTATTCTTGTTTTTCCAAACTTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTTTGGGAGTTTCACTTATTCTTGTTTTTCCAAACTTGTGAG  850

seq1  GTGGATCATAGGTTATTTGTGATTTAGATGTTAAAACCTACATGTTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCATAGGTTATTTGTGATTTAGATGTTAAAACCTACATGTTGCCT  900

seq1  GTCTAGTGTGTCATTTTGTGCTGTTACTAATGGTATAAGGAAACTTTCTC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCTAGTGTGTCATTTTGTGCTGTTACTAATGG-ATAAGGAAACTTTCTC  949

seq1  ATGCTCCAATTGATGGCAGATTCTG-TTATGTTCTGTGCTTTGGTGTTCT  999
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  ATGCTCCAATTGATGGCAGATTCTGTTTATGTTCTGTGCTTT-GTGTTCT  998

seq1  TGGGAATCAATCAAAATAGATGTCAGATAGAACTGCCTTGTATA-GTTAG  1048
      | |||||||  |||||||||||||||| | ||||||| |||||| |||||
seq2  T-GGAATCATCCAAAATAGATGTCAGAAAAAACTGCC-TGTATAGGTTAG  1046

seq1  CCACAATAAGCTTGGGCTGGGACCAACTGC  1078
      || |||| ||||||||||||   |||||||
seq2  CCCCAAT-AGCTTGGGCTGG--ACAACTGC  1073


seq1: chr9_9744647_9745833
seq2: B6Ng01-150C17.g_65_1261 (reverse)

seq1  GGGGTG-CATATG--AGTATGCCTGTGCACATACCACACACTTGTAGCAA  47
      |||||| ||||||   ||||||||||||||  |||||||||||||||  |
seq2  GGGGTGCCATATGGAGGTATGCCTGTGCACTAACCACACACTTGTAGGCA  50

seq1  CCAGAGAA--TGATATAAGCTGACTTTCTCT-ACCACT-CAGTGCCTCAC  93
      || |||||  |||  ||||||||| |||||| |||||| |||| ||||||
seq2  CCCGAGAAATTGAATTAAGCTGAC-TTCTCTAACCACTCCAGTTCCTCAC  99

seq1  -TGCTTTGAGATGAGGCATGTCAATGAACTGGAA-TATCA-CCACTTGGT  140
       ||| ||||||||||||||||| ||||||||||| ||||| |||||||||
seq2  TTGCCTTGAGATGAGGCATGTC-ATGAACTGGAATTATCACCCACTTGGT  148

seq1  -GAGGTCTGGGATTTGAGCTTTC-ACGA-TCTACCTGTCTCTGTCCCTCA  187
       |||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  GGAGGTCTGGGATTTGAGCTTTCAACGATTCTACCTGTCTCTGTCCCTCA  198

seq1  ATTCTGTAATTACAGGCATGTGCAGCCAGGTCCCATGTGGGTGATGAGCA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAATTACAGGCATGTGCAGCCAGGTCCCATGTGGGTGATGAGCA  248

seq1  TTTGAACTCAGGTCTCCAAGCTTACACAGCAAGTGCCATTGTGCCATCTA  287
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGAACTCAGGTCTCCAAGCTTACACAGCAAGTGCCATTGTGCCATCTA  297

seq1  ACCAGCCTCATGTTTCAGTATTTTAAGCATAACTTGTATATCAATTTATA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTCATGTTTCAGTATTTTAAGCATAACTTGTATATCAATTTATA  347

seq1  ATATAATTAATTAGGTAACTCTAAATTTATTGTTTTTTCATAAGGACTAT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTAATTAGGTAACTCTAAATTTATTGTTTTTTCATAAGGACTAT  397

seq1  ACTGTTAAAATGTTAATGTTAATATAATGTTAAAAACATTAGTTGAAACA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAAATGTTAATGTTAATATAATGTTAAAAACATTAGTTGAAACA  447

seq1  TAGTTTCAAAAACAAACAATTTTGTCAAGAATTTTGGTTTTGAATATTGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAAAAACAAACAATTTTGTCAAGAATTTTGGTTTTGAATATTGA  497

seq1  AGAGATTAAAGATGTTTTTCTTTCCAGGTAAGAATATTTAACAGCTTCAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAAGATGTTTTTCTTTCCAGGTAAGAATATTTAACAGCTTCAC  547

seq1  TGCCATCCTTTTATAAAAAATATTGTTGCTGGAGCCATGGGTATAGATTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTTTTATAAAAAATATTGTTGCTGGAGCCATGGGTATAGATTG  597

seq1  TGACAAGGAAAATACATGAATCACAGGGAAAATAATAGCGATATTTAAAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGAAAATACATGAATCACAGGGAAAATAATAGCGATATTTAAAG  647

seq1  ACAGCCAATGCTGAATAAGAGGAGGATACCACTGGAATGGATTTTCTAGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAATGCTGAATAAGAGGAGGATACCACTGGAATGGATTTTCTAGT  697

seq1  AAAATCATCACATCAAAGAATTCAATAAAATACTTGACAAGCTAGTAAAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCACATCAAAGAATTCAATAAAATACTTGACAAGCTAGTAAAC  747

seq1  TGCAGAATTTAATCAACCAATTGGCTCATAGAAAACATACCTATAGACAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATTTAATCAACCAATTGGCTCATAGAAAACATACCTATAGACAG  797

seq1  ACAATAGAAACCAATGGTAAATGTTTCAGAGACATCCTGGAGTTATAAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAAACCAATGGTAAATGTTTCAGAGACATCCTGGAGTTATAAAA  847

seq1  GAAAGATCAGTGATGTTTATAGTCATAGGTGATTTGATAATCATAAATAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCAGTGATGTTTATAGTCATAGGTGATTTGATAATCATAAATAC  897

seq1  ACACAGAAAAAAAACAGATCACATAAGAATTTTCAGTAGCATGAAGAACA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAAAAACAGATCACATAAGAATTTTCAGTAGCATGAAGAACA  947

seq1  TCACATTTTTAAAGTACATTTAATTCACTTAATTGGAAATGGGACTCAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTTAAAGTACATTTAATTCACTTAATTGGAAATGGGACTCAAA  997

seq1  GATGAAATTGCCCCTCTCAAATATAGTTTCATATTTTTCCAAATATACAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATTGCCCCTCTCAAATATAGTTTCATATTTTTCCAAATATACAG  1047

seq1  ATTATTCTTACTTAATTTTTGGATTTTCCTTGCAGACAAAAGAATTTATA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTACTTAATTTTTGGATTTTCCTTGCAGACAAAAGAATTTATA  1097

seq1  AGCCAATTTTACAACATGAATATGTAAGCCCATTCTAAGATATACTTAGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTTTACAACATGAATATGTAAGCCCATTCTAAGATATACTTAGT  1147

seq1  TAGAAGGCCCATGCTCAAATTTTGTTTTAATTAACAAAAATAAGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGCCCATGCTCAAATTTTGTTTTAATTAACAAAAATAAGGAATTC  1197


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