BAC Information

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BAC

Clone NameB6Ng01-150H20
Chromosome9 (Build37)
Map Location 42,841,617 - 43,002,059
singlet/doubletdoublet
Overlap geneArhgef12, Tmem136, Pou2f3
Upstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4, LOC545339
Downstream geneLOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H20.bB6Ng01-150H20.g
ACCDH946555DH946556
length1,050986
definitionDH946555|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H20, 5' end.DH946556|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,841,617 - 42,842,667)(43,001,075 - 43,002,059)
sequence
gaattcaaggagctggacagaaggattgcaagttcaaggccagattgagt
tacaaagtgtggagatcttgtcttcaaaacaaacaaacaaacaaaacaaa
aaataaataaaaataaaaatagggtcaaaaggaaggctcagcagataaaa
ctgcatacttcaagattgacgatttgaattcaatccctggaacccacctg
gtagaagaactagctcctaggagctgtcctctgaccaaccatcacaccca
tactgtgactacacacacacacacacacacacacatttttaatttgctat
ggggctgaagagatggcttagaggtaaagcatccttgttatccaatcacg
aagagcagagtttgagtcccagcacctctatcacaaccccacataattac
ttacttactttctttctttctttcgtttttttttttgtttgtttgttttt
gttttgttttgttttttgttttttcgagacagggtttctctgtgtagtcc
tggctgtcctggaactcactctgtagaccaggctggccttgaactcagaa
atccacctgcctctgcctcccaagttctgggattaaatgtgtgtgccacc
actgcccggcataattacattttcaaggagtccaatactctcttctggcc
cctgtgagtgccctcacttatgtgtatatacactcacacagacacaaaca
aaataaagacaagtcttagggaaaaaacgagtattaaaaaaaaaattaag
tctgaatttattttccacagaggaaatttaaataccactcaaccattttt
agtaagaaaaatcatagccctgaagaatattcacagtagaaaaacaactt
aagggcatatttatgaatgatatgcctgggcaaattcccacaataacaat
ttagttccctatcctgtccctaactaagtaagacctctacttcaccaagt
ttttctcatttctgtcctgaaactttcctctcaagctgatcagctgggat
gaggctaattctcccaatgaatgtgtgtgtggtgtgtgtgtgtgtgtgtg

tacccttatgcttatgtagcaagagcactgtaccaagccgtctgtctgtc
tgtctgtctgtctgttcttgagaaactcatggagctcagatggatcccat
tacagatggtcgtgagccaccatgatgtggttgctgggaattgaactcag
gacctctggtagagcagtcggtgctcttaaccgctgagccatctctccag
ccctccttttctcttctcaaccaagcagttggataaaaatataactttat
tcatgcattaaaagtccccaggctgtaactgacagatcccaacaccaaag
cagctgaccttgggggttttaggctgtgctgatcacttgtggcctcaaac
actagagaaaagacaaaaaacaatgtttcagaaggaagggagggagggag
ggacaaagaaaaaaaccattgggtcacatccccctcctgccctctagccc
catgtaagagctttttggacatcatctcatttaacacgtacagtaaacag
agacctgattagttagctctgttctctccatggagaacattgtggctgag
agggaaaatgtagcttgtttagaagtcatcaggttcttgtcttggctctg
ccatgaatgacctgaacgtttggtcaccattccaacgtagacctttagtt
tcttctttataaaggaaggctttgtactagatcatctgggagggctggct
tgtaaggtctgctttctgtacgctctcgccctcccatctgtttgaacatc
tcttaagtgcgtgtaggtttttcagggagttgagtgccagctcaccgctc
ccttcctcccaagacagccctgcttttctttcagtggcttccatcctacc
ctggcttaagctggcagtcccatgaaaatgtctaggacctccactttgca
gcctgtgctgggctctggagtttctgtccccatgaaacttttcctccaag
gataggatgcttggtgtgttgtgtgtgtgtgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42841617_42842667
seq2: B6Ng01-150H20.b_44_1093

seq1  GAATTCAAGGAGCTGGACAGAAGGATTGCAAGTTCAAGGCCAGATTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGCTGGACAGAAGGATTGCAAGTTCAAGGCCAGATTGAGT  50

seq1  TACAAAGTGTGGAGATCTTGTCTTCAAAACAAACAAACAAACAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGTGGAGATCTTGTCTTCAAAACAAACAAACAAACAAAACAAA  100

seq1  AAATAAATAAAAATAAAAATAGGGTCAAAAGGAAGGCTCAGCAGATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAATAAAAATAGGGTCAAAAGGAAGGCTCAGCAGATAAAA  150

seq1  CTGCATACTTCAAGATTGACGATTTGAATTCAATCCCTGGAACCCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTTCAAGATTGACGATTTGAATTCAATCCCTGGAACCCACCTG  200

seq1  GTAGAAGAACTAGCTCCTAGGAGCTGTCCTCTGACCAACCATCACACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGAACTAGCTCCTAGGAGCTGTCCTCTGACCAACCATCACACCCA  250

seq1  TACTGTGACTACACACACACACACACACACACACATTTTTAATTTGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGACTACACACACACACACACACACACACATTTTTAATTTGCTAT  300

seq1  GGGGCTGAAGAGATGGCTTAGAGGTAAAGCATCCTTGTTATCCAATCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAAGAGATGGCTTAGAGGTAAAGCATCCTTGTTATCCAATCACG  350

seq1  AAGAGCAGAGTTTGAGTCCCAGCACCTCTATCACAACCCCACATAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGAGTTTGAGTCCCAGCACCTCTATCACAACCCCACATAATTAC  400

seq1  TTACTTACTTTCTTTCTTTCTTTCGTTTTTTTTTTTGTTTGTTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACTTTCTTTCTTTCTTTCGTTTTTTTTTTTGTTTGTTTGTTTTT  450

seq1  GTTTTGTTTTGTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGTCC  500

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  550

seq1  ATCCACCTGCCTCTGCCTCCCAAGTTCTGGGATTAAATGTGTGTGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCCCAAGTTCTGGGATTAAATGTGTGTGCCACC  600

seq1  ACTGCCCGGCATAATTACATTTTCAAGGAGTCCAATACTCTCTTCTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCGGCATAATTACATTTTCAAGGAGTCCAATACTCTCTTCTGGCC  650

seq1  CCTGTGAGTGCCCTCACTTATGTGTATATACACTCACACAGACACAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGTGCCCTCACTTATGTGTATATACACTCACACAGACACAAACA  700

seq1  AAATAAAGACAAGTCTTAGGGAAAAAACGAGTAATAAAAAAAAAATTAAG  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATAAAGACAAGTCTTAGGGAAAAAACGAGTATTAAAAAAAAAATTAAG  750

seq1  TCTGAATTTATTTTCCACAGAGGAAATTTAAATACCACTCAACCATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTATTTTCCACAGAGGAAATTTAAATACCACTCAACCATTTTT  800

seq1  AGTAAGAAAAATCATAGCCCTGAAGAATATTCACAGTAGAAAAACAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAAAATCATAGCCCTGAAGAATATTCACAGTAGAAAAACAACTT  850

seq1  AAGGGCATATTAATGAATGATATGCCTGGCAAAATTCCAACAATAACAAT  900
      ||||||||||| |||||||||||||||||  ||||||| |||||||||||
seq2  AAGGGCATATTTATGAATGATATGCCTGGGCAAATTCCCACAATAACAAT  900

seq1  TTAGTTCCCTAT-CTGTCCCTAACTAAGTAAGACCTCTAC-TCACCAAGT  948
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  TTAGTTCCCTATCCTGTCCCTAACTAAGTAAGACCTCTACTTCACCAAGT  950

seq1  TTTTCTCATTTCCTGTCCTGAAAC-TTCCTCTCAAAGCTGATCAGCTGGT  997
      ||||||||||| |||||||||||| |||||||| ||||||||||||||| 
seq2  TTTTCTCATTT-CTGTCCTGAAACTTTCCTCTC-AAGCTGATCAGCTGGG  998

seq1  ATGAGGCTTATTCTCCCAATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTG  1047
      |||||||| |||||||||||||| |||||||||| |||||||||||||||
seq2  ATGAGGCTAATTCTCCCAATGAA-TGTGTGTGTG-GTGTGTGTGTGTGTG  1046

seq1  TGTG  1051
      ||||
seq2  TGTG  1050

seq1: chr9_43001075_43002059
seq2: B6Ng01-150H20.g_72_1056 (reverse)

seq1  CACACACACACACACACACACACACAAGCATCCTATCCTTGGAGG-AAAG  49
      |||||||||||||||| |||||| ||||||||||||||||||||| ||||
seq2  CACACACACACACACA-ACACAC-CAAGCATCCTATCCTTGGAGGAAAAG  48

seq1  TTTCATGGGGACAGAAACTCCAGAGCCCAGCACAGGCTGCAAAGTGGAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGGGACAGAAACTCCAGAGCCCAGCACAGGCTGCAAAGTGGAGG  98

seq1  TCCTAGACATTGTCATGGGACTGCCAGC-TAAGCCAGGGTAGGATGGAAG  148
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TCCTAGACATTTTCATGGGACTGCCAGCTTAAGCCAGGGTAGGATGGAAG  148

seq1  CCACTGAAAGAAAAGCAGGGCTGTCTTGGGAGGAAGGGAGCGGTGAGCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAAGAAAAGCAGGGCTGTCTTGGGAGGAAGGGAGCGGTGAGCTG  198

seq1  GCACTCAACTCCCTGAAAAACCTACACGCACTTAAGAGATGTTCAAACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAACTCCCTGAAAAACCTACACGCACTTAAGAGATGTTCAAACAG  248

seq1  ATGGGAGGGCGAGAGCGTACAGAAAGCAGACCTTACAAGCCAGCCCTCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGGCGAGAGCGTACAGAAAGCAGACCTTACAAGCCAGCCCTCCC  298

seq1  AGATGATCTAGTACAAAGCCTTCCTTTATAAAGAAGAAACTAAAGGTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTAGTACAAAGCCTTCCTTTATAAAGAAGAAACTAAAGGTCTA  348

seq1  CGTTGGAATGGTGACCAAACGTTCAGGTCATTCATGGCAGAGCCAAGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGAATGGTGACCAAACGTTCAGGTCATTCATGGCAGAGCCAAGACA  398

seq1  AGAACCTGATGACTTCTAAACAAGCTACATTTTCCCTCTCAGCCACAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGATGACTTCTAAACAAGCTACATTTTCCCTCTCAGCCACAATG  448

seq1  TTCTCCATGGAGAGAACAGAGCTAACTAATCAGGTCTCTGTTTACTGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGGAGAGAACAGAGCTAACTAATCAGGTCTCTGTTTACTGTAC  498

seq1  GTGTTAAATGAGATGATGTCCAAAAAGCTCTTACATGGGGCTAGAGGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAATGAGATGATGTCCAAAAAGCTCTTACATGGGGCTAGAGGGCA  548

seq1  GGAGGGGGATGTGACCCAATGGTTTTTTTCTTTGTCCCTCCCTCCCTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGATGTGACCCAATGGTTTTTTTCTTTGTCCCTCCCTCCCTCCC  598

seq1  TTCCTTCTGAAACATTGTTTTTTGTCTTTTCTCTAGTGTTTGAGGCCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGAAACATTGTTTTTTGTCTTTTCTCTAGTGTTTGAGGCCACA  648

seq1  AGTGATCAGCACAGCCTAAAACCCCCAAGGTCAGCTGCTTTGGTGTTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAGCACAGCCTAAAACCCCCAAGGTCAGCTGCTTTGGTGTTGGG  698

seq1  ATCTGTCAGTTACAGCCTGGGGACTTTTAATGCATGAATAAAGTTATATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCAGTTACAGCCTGGGGACTTTTAATGCATGAATAAAGTTATATT  748

seq1  TTTATCCAACTGCTTGGTTGAGAAGAGAAAAGGAGGGCTGGAGAGATGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCAACTGCTTGGTTGAGAAGAGAAAAGGAGGGCTGGAGAGATGGC  798

seq1  TCAGCGGTTAAGAGCACCGACTGCTCTACCAGAGGTCCTGAGTTCAATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGTTAAGAGCACCGACTGCTCTACCAGAGGTCCTGAGTTCAATTC  848

seq1  CCAGCAACCACATCATGGTGGCTCACGACCATCTGTAATGGGATCCATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATCATGGTGGCTCACGACCATCTGTAATGGGATCCATCT  898

seq1  GAGCTCCATGAGTTTCTCAAGAACAGACAGACAGACAGACAGACAGACGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCATGAGTTTCTCAAGAACAGACAGACAGACAGACAGACAGACGG  948

seq1  CTTGGTACAGTGCTCTTGCTACATAAGCATAAGGGTA  985
      |||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACAGTGCTCTTGCTACATAAGCATAAGGGTA  985