BAC Information

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BAC

Clone NameB6Ng01-150L17
Chromosome9 (Build37)
Map Location 36,066,868 - 36,068,026
singlet/doubletsinglet
Overlap genenone
Upstream geneC030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
Downstream geneEG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L17.bB6Ng01-150L17.g
ACCDH946737DH946738
length1,2081,140
definitionDH946737|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L17, 5' end.DH946738|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctgataaacagcttcaataaagtagctggatataatta
acacaaacaagtcaatggcctttctgtacacaaaggataaacaggctgag
aaagaaattagggaaacaacacccttctcaatagtcacaaataatataaa
ataacttggcatgactctaactaaggaagtgaaagatctgtgtgataaga
acttcaagtctctgaagaaagaaattaaagaagatctcagaagatagaaa
gatctcacatgctcatggattagcaggatcaatattgtaaaaatggctat
cttggcaagagcaatctacagattcaatgcaatccccatcaaaattccaa
ctcaattcttcaatgaattagaaagggaaatctgcaaattcatctggaat
aacaaaaaaacctagaatagcaaaaactcttctcaaggataaaaaaaacc
tcttggtgaatcaccatgcctgatattaagctgtactacagagcaattgt
gataaaaagtgtatggtactggtatatcaacagacaagtagactaatgga
atagaattgaagatccagaaatgtacccacacacctatggtcacttgatc
ttttacaagggagctaaaaccatccagtgtaaaaaaaagacagcatttcc
aacaaatggtgctggcacaactggtggttttaatgtagaagaatccgaat
tgatccactcctatgtccctgtactaaggtaaatctaagtggattaagga
actccacataaaaccagagacactgaaacttatagaggagaaagtgggga
aaagcctcgaagttatgggcacaagggaaaaatttctgaatagaactgca
atggcttgtgctctaagattgagaatcgacaaataggatctcataaaatt
gcaaagcttccgccaggcaaagacactgtcatagacaaaaggctaccaga
gattggaaaggatctttactatcctaatcagataggggactatatctaat
atatatataagactaaagatggtggtctcagaaatcaatacccataaatg
gggttcagactaacagaattctcactgagatgcagattgcagaaagacct
gaagaattttcacatccttatcatcagatgccaatcaaagacctggaatc
accttcacagtcgatgcctagatcgagtgcagggtggacacagcaatagc
tctgggga
gaattccagaagggttacattttcctgctaaccctcagtttggtatcagc
ttccatctttactgtgaaacacacaaatatatagaagtagtagcaagaaa
tatatatatatatatatatatatatatatatatatatatatatatataca
cacacacactatccataaaagtaaccatgtgtattgtccatttctatgga
ttactattataagaacctggaaaaagtaccactgccacacagcatcattt
tataggatctcctacgttgttcttcgaaaaagtgaacccagggctatatc
aacctgcctttcctttgccaaggcacaaagaagcaagaaattatgataat
agaatgcttgacatttgagattattgggagccctcaaacaagcattgggc
ttagtcctgggaaagggctatcacttagaaggcataggaagaaatatctc
tgtgatttcatggccaaactagtctatataatgagtaccatgttagcaga
attgtatattgagaccttgtcccaaaaaacggagttggtctcagatgctt
cagtcagaggttccattgagaagttacaactctagagacaacagcagacc
aagacctgagagtgacactctgtcatgggaagagaaagaacctggcagtt
gtggatagctgtaggagttgtctgaagaagtttagctgcccacgtggctt
tcctatgggttgcgagtttgagtgggtcggaaactaagtacaatttcttc
taggcggcctttgcaatcttggctgaacatcaagaaaagcttaattctct
cattaacttaagccaactgattagttaacaagataaatttagctatgagt
catggagagaatctggagctatatttccacagcacaagtagtcaaggttt
agagggctatggcataggaacttccacagatgtctttggaatcttgtttt
ctttctgcatctataggatttactctaggattttatgagaatctctgaat
gctcttttctcttaagtcaaacttgaggctcaatcaattttcttcagaaa
tactataactctgatcggatagatagaaggacctggatccaatccaatcc
agatcagcagttcccaattagctgtccagttctgcaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36066868_36068026
seq2: B6Ng01-150L17.g_65_1204

seq1  GAATTCCAGAAGGGTTACATTTTCCTGCTAACCCTCAGTTTGGTATCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGGGTTACATTTTCCTGCTAACCCTCAGTTTGGTATCAGC  50

seq1  TTCCATCTTTACTGTGAAACACACAAATATATAGAAGTAGTAGCAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTTTACTGTGAAACACACAAATATATAGAAGTAGTAGCAAGAAA  100

seq1  TATATATATATATATATATATATATATATATATATATATATATATATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATACA  150

seq1  CACACACACTATCCATAAAAGTAACCATGTGTATTGTCCATTTCTATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTATCCATAAAAGTAACCATGTGTATTGTCCATTTCTATGGA  200

seq1  TTACTATTATAAGAACCTGGAAAAAGTACCACTGCCACACAGCATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTATAAGAACCTGGAAAAAGTACCACTGCCACACAGCATCATTT  250

seq1  TATAGGATCTCCTACGTTGTTCTTCGAAAAAGTGAACCCAGGGCTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATCTCCTACGTTGTTCTTCGAAAAAGTGAACCCAGGGCTATATC  300

seq1  AACCTGCCTTTCCTTTGCCAAGGCACAAAGAAGCAAGAAATTATGATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTTTCCTTTGCCAAGGCACAAAGAAGCAAGAAATTATGATAAT  350

seq1  AGAATGCTTGACATTTGAGATTATTGGGAGCCCTCAAACAAGCATTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTGACATTTGAGATTATTGGGAGCCCTCAAACAAGCATTGGGC  400

seq1  TTAGTCCTGGGAAAGGGCTATCACTTAGAAGGCATAGGAAGAAATATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTGGGAAAGGGCTATCACTTAGAAGGCATAGGAAGAAATATCTC  450

seq1  TGTGATTTCATGGCCAAACTAGTCTATATAATGAGTACCATGTTAGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCATGGCCAAACTAGTCTATATAATGAGTACCATGTTAGCAGA  500

seq1  ATTGTATATTGAGACCTTGTCCCAAAAAACGGAGTTGGTCTCAGATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATTGAGACCTTGTCCCAAAAAACGGAGTTGGTCTCAGATGCTT  550

seq1  CAGTCAGAGGTTCCATTGAGAAGTTACAACTCTAGAGACAACAGCAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAGGTTCCATTGAGAAGTTACAACTCTAGAGACAACAGCAGACC  600

seq1  AAGACCTGAGAGTGACACTCTGTCATGGGAAGAGAAAGAACCTGGCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGAGAGTGACACTCTGTCATGGGAAGAGAAAGAACCTGGCAGTT  650

seq1  GTGGATAGCTGTAGGAGTTGTCTGAAGAAGTTTAGCTGCCCACGTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGCTGTAGGAGTTGTCTGAAGAAGTTTAGCTGCCCACGTGGCTT  700

seq1  TCCTATGGGTTGCGAGTTTGAGTGGGTCGGAAACTAAGTACAATTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGGTTGCGAGTTTGAGTGGGTCGGAAACTAAGTACAATTTCTTC  750

seq1  TAGGCGGCCTTTGCAATCTTGGCTGAACATCAGGAAAAGCTTAATTCTCT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGGCGGCCTTTGCAATCTTGGCTGAACATCAAGAAAAGCTTAATTCTCT  800

seq1  CATTAACTTAAGCCAACTGATTAGTTAACAAGATAAATTTAGCTATGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTAAGCCAACTGATTAGTTAACAAGATAAATTTAGCTATGAGT  850

seq1  CATGGAGAGAAATCTGGAGCTATATTTCCACAGCACAAAGTAGTCAAAGG  900
      ||||||||| |||||||||||||||||||||||||| |||||||| ||||
seq2  CATGGAGAG-AATCTGGAGCTATATTTCCACAGCAC-AAGTAGTC-AAGG  897

seq1  TTTAGAGGGCTATGGCCATAGGAACTTCCACAGATGTCTTTGGAATCTTG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGGCTATGG-CATAGGAACTTCCACAGATGTCTTTGGAATCTTG  946

seq1  TTTTCTTTCTGCATCTATAGGATTTACTTCTAGGGATTTTATGAGAATCT  1000
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TTTTCTTTCTGCATCTATAGGATTTAC-TCTA-GGATTTTATGAGAATCT  994

seq1  CTGAATGCTC-TTTCTCTTAGGTCAAACTTTGAGGCTCAATCAATTTTCT  1049
      |||||||||| ||||||||| ||||||| |||||||||||||||||||||
seq2  CTGAATGCTCTTTTCTCTTAAGTCAAAC-TTGAGGCTCAATCAATTTTCT  1043

seq1  TCTAGAATACCAATAAACTCTGATCCAGATAGATTAGAAGGGAACCTGAT  1099
      ||   ||||| |   ||||||||| | |||||| |||||||  |||||  
seq2  TCAGAAATACTA--TAACTCTGAT-CGGATAGA-TAGAAGG--ACCTGGA  1087

seq1  CCCAGATCAAACCCAGATTCAGGCAGTTCCCAAATTTAGCTGCCCCAGTC  1149
       ||| ||| || ||||| ||| |||||||||||  |||||||  ||||| 
seq2  TCCA-ATCCAATCCAGA-TCA-GCAGTTCCCAA--TTAGCTG-TCCAGTT  1131

seq1  CTGCCAATCC  1159
      ||| ||||||
seq2  CTG-CAATCC  1140