BAC Information

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BAC

Clone NameB6Ng01-150O02
Chromosome9 (Build37)
Map Location 98,600,251 - 98,792,258
singlet/doubletdoublet
Overlap geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream gene7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O02.bB6Ng01-150O02.g
ACCDH946846DH946847
length1,126942
definitionDH946846|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O02, 5' end.DH946847|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,791,109 - 98,792,258)(98,600,251 - 98,601,195)
sequence
gaattcaggctcaggagtccttcctatctcccactgatgggtcctaccca
tgccccagggacaccacaaagccatagccctgtcactgttttcatgaagt
gtcaggaagtcccatgattttgacttctaaacacaaaagaaaggggcaag
gatgagaggccaaatttagtaaatttagactccatttcagagaacctgac
ctaaaattcaactcaagtagccctcctaatgctatgtaagtgggtcctaa
atgtttcaaagtgtccttcttactgtacttagtgagttgggtttctgagc
actttcccactagctggcatacttggtgcctccagtgtttttttcctcct
ttccttttctacaggggtgcatggagccaaggctggccttgaactctata
cttagatgagattctgatttagcttctgctccttctgccttaccctgaga
ttacaggtaaagaccacctcagccagtaaaattaagccttctaagtgtgt
tggacttaaaggttcagtttgaaaatgtggatagtgatccatttcagttt
ttttttcaattgcagaaccaatcaattgacctattacactcacttgataa
ttttaacctttcctactgaatgccattattcccaacattacacagtctcc
taggttttgttgtctttgctatagaaggattatgagaaagttggtataaa
ctttgtaaaagaaaaaggagaggaaggaaaagagaaataccaattcattc
ttatctctctcttttcttttcttttcttttcttttcttgccttgtcttgt
cttttctttttttcttataaaggcaacatttaactgggcctggcttacag
gttaagcagttcactccgctgaagcaactcaacctccaggcaggcatggt
gcagcagagctgagagttctattctacatcttcatctgaggctgctagca
gatactggcctctctcttttctctactttaattgttgttggtattttatg
gtgttctgaaatgctttacctcccttttagccagcaccaccaagtattgg
taacgacagaacctgggattgacctgtttagattgttttgtggcaatatt
atctggttgtacgaaatggcagttga
gaattccaggacagctaggactacacagagaaaccctgtcttgaaaaaca
aaaattaataataataattaaaatttttaaaaaggactaaaataaactat
ttgcatatcacaaaacaggaagggagccactgggaggacggtgggaaaac
ctgtggatgaagactgtgaaggagctttctctggctctgtttcagttttc
agtgctttgcctagtcctttctagattcttttctctgctcaaatcttcct
tctccttcttaatgtgctattatgcataagaaataatggcaggaatgaag
tctgtacctgcagaatacaataacattttctggatatttttgatctgtgt
ttggttagctggttgcagatatgtattttttattgaaaacatttgttttt
ataccatatattctgatcgagctcccccccaactcaaccccttctgaatc
ctccccacccagctccatgttctctctctctctctttctctctctctctc
tttctctctctctctctcacacacacacacacacacacactctctctctc
tctcaaaacaactaaactacaaacagtccaagaaactatacacacacacc
ccacaaaattggaaaccataatatatatgaaaaaaataagaacaaaaaat
ttgcccaaacaaagttatatatgacaaaaaccctacaaaccaccattgag
ttcatttcctgttagccatctactccaggcaggcgtgggcatcccctaaa
tatgtttaatacacccagtgagactcgatagaaaagactaattatcatta
ttatttgcaagcaggtatcatttacagatagcttcttggctaggggtggg
agtctgtgtctattccccctcttggcatgggctcgccacctggcttaaac
ctatgcaaacccttgcgtactgccactgtctctgcaagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98791109_98792258
seq2: B6Ng01-150O02.b_49_1174 (reverse)

seq1  TCAACTGCCAATTTCTGTACAACACAGATAATATTGCTCCAAAAACCATT  50
      ||||||||| ||||| ||||||| ||||||||||||  ||| ||| ||  
seq2  TCAACTGCC-ATTTC-GTACAAC-CAGATAATATTG--CCACAAAACA-A  44

seq1  TCTAAACAGGTCCACTTCCCCAGTATCCTGTCGTTTCCACTACCTCTGGT  100
      |||||||||||| |    |||||  | |||||||| ||| |||   ||||
seq2  TCTAAACAGGTCAA---TCCCAG-GTTCTGTCGTTACCAATAC--TTGGT  88

seq1  GGGTGCTGGCCTAAAAGGGAGGTTAAAGCATTTCAGAACCACCATTAAAA  150
       |||||||| |||||||||||| ||||||||||||||| ||||| |||||
seq2  -GGTGCTGG-CTAAAAGGGAGG-TAAAGCATTTCAGAA-CACCA-TAAAA  133

seq1  TAACCAACAAAACAATTAAAGGTAGAGAAAAGAGAGAGGCCAGTATTCTG  200
      | ||||||  |||||||||| |||||||||||||||||||||||| ||||
seq2  T-ACCAAC--AACAATTAAA-GTAGAGAAAAGAGAGAGGCCAGTA-TCTG  178

seq1  CTAGCAGCCCTCAGATGAAGATGTAGAATAGAACTCTCAGCTCCTGCTGC  250
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGCAG-CCTCAGATGAAGATGTAGAATAGAACTCTCAGCT-CTGCTGC  226

seq1  ACCATGCCTGCCTGGAGGTTGAGTTGCTTCAGCGGAGTGAACTGCTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGCCTGGAGGTTGAGTTGCTTCAGCGGAGTGAACTGCTTAAC  276

seq1  CTGTAAGCCAGGCCCAGTTAAATGTTGCCTTTATAAGAAAAAAAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCCAGGCCCAGTTAAATGTTGCCTTTATAAGAAAAAAAGAAAAG  326

seq1  ACAAGACAAGGCAAGAAAAGAAAAGAAAAGAAAAGAAAAGAGAGAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAGGCAAGAAAAGAAAAGAAAAGAAAAGAAAAGAGAGAGATAA  376

seq1  GAATGAATTGGTATTTCTCTTTTCCTTCCTCTCCTTTTTCTTTTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTGGTATTTCTCTTTTCCTTCCTCTCCTTTTTCTTTTACAAAG  426

seq1  TTTATACCAACTTTCTCATAATCCTTCTATAGCAAAGACAACAAAACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAACTTTCTCATAATCCTTCTATAGCAAAGACAACAAAACCTA  476

seq1  GGAGACTGTGTAATGTTGGGAATAATGGCATTCAGTAGGAAAGGTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTGTAATGTTGGGAATAATGGCATTCAGTAGGAAAGGTTAAAA  526

seq1  TTATCAAGTGAGTGTAATAGGTCAATTGATTGGTTCTGCAATTGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGTGAGTGTAATAGGTCAATTGATTGGTTCTGCAATTGAAAAAA  576

seq1  AAACTGAAATGGATCACTATCCACATTTTCAAACTGAACCTTTAAGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAATGGATCACTATCCACATTTTCAAACTGAACCTTTAAGTCCA  626

seq1  ACACACTTAGAAGGCTTAATTTTACTGGCTGAGGTGGTCTTTACCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTAGAAGGCTTAATTTTACTGGCTGAGGTGGTCTTTACCTGTAA  676

seq1  TCTCAGGGTAAGGCAGAAGGAGCAGAAGCTAAATCAGAATCTCATCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTAAGGCAGAAGGAGCAGAAGCTAAATCAGAATCTCATCTAAG  726

seq1  TATAGAGTTCAAGGCCAGCCTTGGCTCCATGCACCCCTGTAGAAAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTTCAAGGCCAGCCTTGGCTCCATGCACCCCTGTAGAAAAGGAA  776

seq1  AGGAGGAAAAAAACACTGGAGGCACCAAGTATGCCAGCTAGTGGGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAAAAACACTGGAGGCACCAAGTATGCCAGCTAGTGGGAAAGT  826

seq1  GCTCAGAAACCCAACTCACTAAGTACAGTAAGAAGGACACTTTGAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAACCCAACTCACTAAGTACAGTAAGAAGGACACTTTGAAACAT  876

seq1  TTAGGACCCACTTACATAGCATTAGGAGGGCTACTTGAGTTGAATTTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCCACTTACATAGCATTAGGAGGGCTACTTGAGTTGAATTTTAG  926

seq1  GTCAGGTTCTCTGAAATGGAGTCTAAATTTACTAAATTTGGCCTCTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTTCTCTGAAATGGAGTCTAAATTTACTAAATTTGGCCTCTCATC  976

seq1  CTTGCCCCTTTCTTTTGTGTTTAGAAGTCAAAATCATGGGACTTCCTGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCTTTCTTTTGTGTTTAGAAGTCAAAATCATGGGACTTCCTGAC  1026

seq1  ACTTCATGAAAACAGTGACAGGGCTATGGCTTTGTGGTGTCCCTGGGGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGAAAACAGTGACAGGGCTATGGCTTTGTGGTGTCCCTGGGGCA  1076

seq1  TGGGTAGGACCCATCAGTGGGAGATAGGAAGGACTCCTGAGCCTGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGACCCATCAGTGGGAGATAGGAAGGACTCCTGAGCCTGAATTC  1126

seq1: chr9_98600251_98601195
seq2: B6Ng01-150O02.g_69_1010

seq1  GAATTCCAGGACAGCTAGGACTACACAGAGAAACCCTGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCTAGGACTACACAGAGAAACCCTGTCTTGAAAAACA  50

seq1  AAAATTAATAATAATAATTAAAATTTTTAAAAAGGACTAAAATAAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAATAATAATTAAAATTTTTAAAAAGGACTAAAATAAACTAT  100

seq1  TTGCATATCACAAAACAGGAAGGGAGCCACTGGGAGGACGGTGGGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATCACAAAACAGGAAGGGAGCCACTGGGAGGACGGTGGGAAAAC  150

seq1  CTGTGGATGAAGACTGTGAAGGAGCTTTCTCTGGCTCTGTTTCAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATGAAGACTGTGAAGGAGCTTTCTCTGGCTCTGTTTCAGTTTTC  200

seq1  AGTGCTTTGCCTAGTCCTTTCTAGATTCTTTTCTCTGCTCAAATCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGCCTAGTCCTTTCTAGATTCTTTTCTCTGCTCAAATCTTCCT  250

seq1  TCTCCTTCTTAATGTGCTATTATGCATAAGAAATAATGGCAGGAATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTTAATGTGCTATTATGCATAAGAAATAATGGCAGGAATGAAG  300

seq1  TCTGTACCTGCAGAATACAATAACATTTTCTGGATATTTTTGATCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCTGCAGAATACAATAACATTTTCTGGATATTTTTGATCTGTGT  350

seq1  TTGGTTAGCTGGTTGCAGATATGTATTTTTTATTGAAAACATTTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGCTGGTTGCAGATATGTATTTTTTATTGAAAACATTTGTTTTT  400

seq1  ATACCATATATTCTGATCGAGCTCCCCCCCAACTCAACCCCTTCTGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATATATTCTGATCGAGCTCCCCCCCAACTCAACCCCTTCTGAATC  450

seq1  CTCCCCACCCAGCTCCATGTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCAGCTCCATGTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC  500

seq1  TTTCTCTCTCTCTCTCTCACACACACACACACACACACACTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTCTCTCTCACACACACACACACACACACACTCTCTCTCTC  550

seq1  TCTCAAAACAACTAAACTACAAACAGTCCAAGAAACTATACACACACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACAACTAAACTACAAACAGTCCAAGAAACTATACACACACACC  600

seq1  CCACAAAATTGGAAACCATAATATATATGAAAAAAATAAGAACAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATTGGAAACCATAATATATATGAAAAAAATAAGAACAAAAAAT  650

seq1  TTGCCCAAAACAAAGTTATATATGACAAAAACCCTACAAACCACCATTGA  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCC-AAACAAAGTTATATATGACAAAAACCCTACAAACCACCATTGA  699

seq1  GTTCATTTCCTGTTAGCCATCTACTCCAGGCAGGCGTGGGCATCCCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCCTGTTAGCCATCTACTCCAGGCAGGCGTGGGCATCCCCTAA  749

seq1  ATATGTTTAATACACCCAGTGAGACTCGATAGAAAAGACTAATTATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTAATACACCCAGTGAGACTCGATAGAAAAGACTAATTATCATT  799

seq1  ATTATTTTGCAAGCAGGTATCAATTACAGATAGCTTCTTGGCTAGGGGTG  850
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTA-TTTGCAAGCAGGTATCATTTACAGATAGCTTCTTGGCTAGGGGTG  848

seq1  GGAGCCTGTGTCTATTCCCCCTCTTGGCATTGGGCTCGCCACCTGGCTTA  900
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGTCTGTGTCTATTCCCCCTCTTGGCA-TGGGCTCGCCACCTGGCTTA  897

seq1  AACCTATGCAGACCCTTGCGTACTGCCACTGTCTCTGCGAGTGAG  945
      |||||||||| ||||||||||||||||||||||||||| ||||||
seq2  AACCTATGCAAACCCTTGCGTACTGCCACTGTCTCTGCAAGTGAG  942