BAC Information

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BAC

Clone NameB6Ng01-151J10
Chromosome9 (Build37)
Map Location 24,434,358 - 24,592,160
singlet/doubletdoublet
Overlap geneTbx20
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151J10.bB6Ng01-151J10.g
ACCDH947370DH947371
length1,1361,165
definitionDH947370|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J10, 5' end.DH947371|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,591,028 - 24,592,160)(24,434,358 - 24,435,528)
sequence
tttgtccctgtaggactgcctttctgtggagtgatgtacttgagaatgtg
tttctatgtggggaatgttaacaatagaagaactgattaggcattcacac
ctgggtagggggaatgggatggatatgtgtgacaaggtgagggtacagaa
aaggcatgtcagaaaaccacatatttttatggcattagctgttttccatg
gtctgtatcatacatgaagcaaaacagagctaacagtagtactgagggta
ggaacaaagtatttggagtccaaacattataagtttttgtattgtttagg
aagacctcattgctggcaggagatggaaccccaagaatacccagcatgca
atagcagcaagatgacttaattacagaaaacttggaactattgctagagt
gaatcactagttaagagcagcggcatccggaggttggagagatggctctg
tggtaagagctctttcagaggacctgggttcaattccaagcactgaaatg
acagctcacaagtgtcatagctgtagttgcagggatccaacaccctcaca
cagaatatatgcaggcaaaacaccaatgcacatacaataaaaattaaaat
aaaatttaaaaacctgctgcatccaacctttacaagagagattaagatgt
caaacactgtgagtgggccgggcgtggtggcgcacgcctttaatcccagc
actcgggaggcagaggcaggcggatttctgagttcaaggccagcctggtc
tacaaagtgagttccaggacagccagggctatacagagaaactctgtctg
gaaaaaccaaccaaccaatcaaccatccaaccaaccaaccaaccaacaac
aaacaaaaaaccactgtgagctgtagcatgatgttctgaagataacacac
tggaaattctgagatctgtgtgtgtgtggtgtggaatccagaggtcacat
aggaattctttctttgattattgttcacctttattcttttgagacaagtc
aaccactggaaccaaaaagctttatgatttcatccagaattcagcaactt
tgctctaccagccagggtccagggatctcttgaatcgcatctcaggctag
actatcaaggcacaccaggcctacagttccttttca
gaattctctttcataggaatcatggctacacttagtatgttgacttatat
gacaccatctaccaaagccattcaagaacccttgctttctgccactgagg
agacaattatttttccactatgagtcctttgatgcatgaaacattgattc
aacttctctgagaaacacaaaaatcattttaccaactttgatggctacct
gtgttcaccactaactcaatactggatcaacaagagttaacacttttcaa
cttaaaatagtcctggcaactaataataacaataaaattactaaattttc
acttagagaaagtcatttggactaccatcacaccatcaattatggatcta
taatctgatcatttaccataaaaatgactggactatatttttcgtttcat
cggatgatgatgtgtaagtttcctttttagatttgcagagtttgagtagg
aataggagaaattgtgagaagtaaaattaccagccaactaaatggacaag
aaatatctaaatagtctaaataaagttaaataaaaagataccttactaaa
ttaaaaccggcacctcacatcctagaaacagaaacaacaaatataccaaa
gaggccatggttgccatctcagtatgtaggaaatggggttttatacattg
aaggtttttcatgtgagtgtgttccattctcttggccattcccacctcct
ttgcttttgcagaagcaatactacaattggttgccaagcataacgtaatt
ctttacagggaaagccacacagcacagaattagacaaggaaatttccacc
taccctttcttttgttaccttcatgtatggtatgcttatttctttttttt
tttaatcttttattttttaattagatatttttcttttattacatttcaaa
tgttatccccttttcaaagattccacttcaaaaaatcccctcccctccct
gtcccctgctcccaacccacccatcctctgctacatatgcagctagagac
atgagtaccaccagtgattctttgaatagtggttagtccaagggagctgg
gactgtttctggaagactacatttggcattgactggagaacattttctgg
ggcatgcacattccttgtgtatgcacgaactttatgatcagctctggagc
ctacgtgcctggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24591028_24592160
seq2: B6Ng01-151J10.b_57_1192 (reverse)

seq1  TGAAAAGG-ACTGTAGGCCTGGTGTGCCT--GTAGTCTTAGCACTGAGGA  47
      |||||||| ||||||||||||||||||||   ||||| |||| |||| ||
seq2  TGAAAAGGAACTGTAGGCCTGGTGTGCCTTGATAGTC-TAGC-CTGA-GA  47

seq1  TGCAGACTCAGGAAGATTCCTGGA-CCTTGCTGGT-GAGCCAGGCTGGCT  95
      ||| || ||| | |||| |||||| ||| |||||| |||| | | | |||
seq2  TGC-GATTCAAG-AGATCCCTGGACCCTGGCTGGTAGAGCAAAG-TTGCT  94

seq1  GAA-TCTGGCTGAATTCAT-GAGCTTTTTGG-TCCAGTGGTTGACCTTGT  142
      ||| ||||| |||| ||||  |||||||||| |||||||||||| |||||
seq2  GAATTCTGGATGAAATCATAAAGCTTTTTGGTTCCAGTGGTTGA-CTTGT  143

seq1  CTCAAAAGAAT-AAGGTG-ACAATAATCAAAG-AAGATTCCTTATGTTGA  189
      ||||||||||| |||||| ||||||||||||| |||| | | |||| |||
seq2  CTCAAAAGAATAAAGGTGAACAATAATCAAAGAAAGAATTCCTATG-TGA  192

seq1  CCTCTGGATTTCACA-CACACACACACAGATCTCAGAATTT-CAGTGTGT  237
      |||||||||| |||| ||||||||||||||||||||||||| ||||||||
seq2  CCTCTGGATTCCACACCACACACACACAGATCTCAGAATTTCCAGTGTGT  242

seq1  TATCTTTCAGAACATCATGCTACAGCTCACAGTGGTTTTTTGTTTGTTGG  287
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATC-TTCAGAACATCATGCTACAGCTCACAGTGGTTTTTTGTTTGTT-G  290

seq1  TTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTTTTCCAGA  337
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTGGTTGGTTGGTTGGTTGGATGGTTGATTGGTTGGTTGGTTTTTCCAGA  340

seq1  CAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  390

seq1  AGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTG  440

seq1  GGATTAAAGGCGTGCGCCACCACGCCCGGCCCACTCACAGTGTTTGACAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCGCCACCACGCCCGGCCCACTCACAGTGTTTGACAT  490

seq1  CTTAATCTCTCTTGTAAAGGTTGGATGCAGCAGGTTTTTAAATTTTATTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTCTCTTGTAAAGGTTGGATGCAGCAGGTTTTTAAATTTTATTT  540

seq1  TAATTTTTATTGTATGTGCATTGGTGTTTTGCCTGCATATATTCTGTGTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTATTGTATGTGCATTGGTGTTTTGCCTGCATATATTCTGTGTG  590

seq1  AGGGTGTTGGATCCCTGCAACTACAGCTATGACACTTGTGAGCTGTCATT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTGGATCCCTGCAACTACAGCTATGACACTTGTGAGCTGTCATT  640

seq1  TCAGTGCTTGGAATTGAACCCAGGTCCTCTGAAAGAGCTCTTACCACAGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTGGAATTGAACCCAGGTCCTCTGAAAGAGCTCTTACCACAGA  690

seq1  GCCATCTCTCCAACCTCCGGATGCCGCTGCTCTTAACTAGTGATTCACTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCCAACCTCCGGATGCCGCTGCTCTTAACTAGTGATTCACTC  740

seq1  TAGCAATAGTTCCAAGTTTTCTGTAATTAAGTCATCTTGCTGCTATTGCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAGTTCCAAGTTTTCTGTAATTAAGTCATCTTGCTGCTATTGCA  790

seq1  TGCTGGGTATTCTTGGGGTTCCATCTCCTGCCAGCAATGAGGTCTTCCTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTATTCTTGGGGTTCCATCTCCTGCCAGCAATGAGGTCTTCCTA  840

seq1  AACAATACAAAAACTTATAATGTTTGGACTCCAAATACTTTGTTCCTACC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACAAAAACTTATAATGTTTGGACTCCAAATACTTTGTTCCTACC  890

seq1  CTCAGTACTACTGTTAGCTCTGTTTTGCTTCATGTATGATACAGACCATG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACTACTGTTAGCTCTGTTTTGCTTCATGTATGATACAGACCATG  940

seq1  GAAAACAGCTAATGCCATAAAAATATGTGGTTTTCTGACATGCCTTTTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCTAATGCCATAAAAATATGTGGTTTTCTGACATGCCTTTTCT  990

seq1  GTACCCTCACCTTGTCACACATATCCATCCCATTCCCCCTACCCAGGTGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCACCTTGTCACACATATCCATCCCATTCCCCCTACCCAGGTGT  1040

seq1  GAATGCCTAATCAGTTCTTCTATTGTTAACATTCCCCACATAGAAACACA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTAATCAGTTCTTCTATTGTTAACATTCCCCACATAGAAACACA  1090

seq1  TTCTCAAGTACATCACTCCACAGAAAGGCAGTCCTACAGGGACAAA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTACATCACTCCACAGAAAGGCAGTCCTACAGGGACAAA  1136

seq1: chr9_24434358_24435528
seq2: B6Ng01-151J10.g_67_1231

seq1  GAATTCTCTTTCATAGGAATCATGGCTACACTTAGTATGTTGACTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCATAGGAATCATGGCTACACTTAGTATGTTGACTTATAT  50

seq1  GACACCATCTACCAAAGCCATTCAAGAACCCTTGCTTTCTGCCACTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATCTACCAAAGCCATTCAAGAACCCTTGCTTTCTGCCACTGAGG  100

seq1  AGACAATTATTTTTCCACTATGAGTCCTTTGATGCATGAAACATTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTATTTTTCCACTATGAGTCCTTTGATGCATGAAACATTGATTC  150

seq1  AACTTCTCTGAGAAACACAAAAATCATTTTACCAACTTTGATGGCTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTGAGAAACACAAAAATCATTTTACCAACTTTGATGGCTACCT  200

seq1  GTGTTCACCACTAACTCAATACTGGATCAACAAGAGTTAACACTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACCACTAACTCAATACTGGATCAACAAGAGTTAACACTTTTCAA  250

seq1  CTTAAAATAGTCCTGGCAACTAATAATAACAATAAAATTACTAAATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAGTCCTGGCAACTAATAATAACAATAAAATTACTAAATTTTC  300

seq1  ACTTAGAGAAAGTCATTTGGACTACCATCACACCATCAATTATGGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGAAAGTCATTTGGACTACCATCACACCATCAATTATGGATCTA  350

seq1  TAATCTGATCATTTACCATAAAAATGACTGGACTATATTTTTCGTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGATCATTTACCATAAAAATGACTGGACTATATTTTTCGTTTCAT  400

seq1  CGGATGATGATGTGTAAGTTTCCTTTTTAGATTTGCAGAGTTTGAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGATGATGTGTAAGTTTCCTTTTTAGATTTGCAGAGTTTGAGTAGG  450

seq1  AATAGGAGAAATTGTGAGAAGTAAAATTACCAGCCAACTAAATGGACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGAAATTGTGAGAAGTAAAATTACCAGCCAACTAAATGGACAAG  500

seq1  AAATATCTAAATAGTCTAAATAAAGTTAAATAAAAAGATACCTTACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAATAGTCTAAATAAAGTTAAATAAAAAGATACCTTACTAAA  550

seq1  TTAAAACCGGCACCTCACATCCTAGAAACAGAAACAACAAATATACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCGGCACCTCACATCCTAGAAACAGAAACAACAAATATACCAAA  600

seq1  GAGGCCATGGTTGCCATCTCAGTATGTAGGAAATGGGGTTTTATACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGGTTGCCATCTCAGTATGTAGGAAATGGGGTTTTATACATTG  650

seq1  AAGGTTTTTCATGTGAGTGTGTTCCATTCTCTTGGCCATTCCCACCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTCATGTGAGTGTGTTCCATTCTCTTGGCCATTCCCACCTCCT  700

seq1  TTGCTTTTGCAGAAGCAATACTACAATTGGTTGCCAAGCATAACGTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGCAGAAGCAATACTACAATTGGTTGCCAAGCATAACGTAATT  750

seq1  CTTTACAGGGAAAGCCACACAGCACAGAATTAGACAAGGAAATTTCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGGAAAGCCACACAGCACAGAATTAGACAAGGAAATTTCCACC  800

seq1  TACCCTTTCTTTTGTTACCTTCATGTATGGTATGCTTATTTCTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTCTTTTGTTACCTTCATGTATGGTATGCTTATTTCTTTTTTTT  850

seq1  TTTAATCTTTTATTTTTTTAATTAGATA-TTTTCTTTATTTACATTTCAA  899
      |||||||||||| ||||||||||||||| ||||||||  |||||||||||
seq2  TTTAATCTTTTA-TTTTTTAATTAGATATTTTTCTTTTATTACATTTCAA  899

seq1  ATGTTATCCCC-TTTCAAAGATTCCACTTCAAAAAATCCCCCTCCCCTCC  948
      ||||||||||| ||||||||||||||||||||||||| |||||||||| |
seq2  ATGTTATCCCCTTTTCAAAGATTCCACTTCAAAAAAT-CCCCTCCCCT-C  947

seq1  CCTGTCCCCCTGCTCCCCAACCCACCCATCCTCTGCTACATATGCAGCTA  998
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGT-CCCCTGCT-CCCAACCCACCCATCCTCTGCTACATATGCAGCTA  995

seq1  GAGACATGAGTACCACCATGTGATTTCTTTGATTAGTGGTTTAGTCCAAG  1048
      |||||||||||||||||| |||| |||||||| |||||| ||||||||||
seq2  GAGACATGAGTACCACCA-GTGA-TTCTTTGAATAGTGG-TTAGTCCAAG  1042

seq1  GGAGCTGGGACTGTTTCTGGAAGACTACA-TTGGCATTGACT-GAGACAT  1096
      ||||||||||||||||||||||||||||| |||||||||||| ||||   
seq2  GGAGCTGGGACTGTTTCTGGAAGACTACATTTGGCATTGACTGGAGAACA  1092

seq1  TTTTCCTGGGCATTCACTATTCCTTGTTGATTTGCA-GAACTTTATGATC  1145
      |||||  |||||| ||| |||||||||   | |||| |||||||||||||
seq2  TTTTCTGGGGCATGCAC-ATTCCTTGT--GTATGCACGAACTTTATGATC  1139

seq1  AGCTCTGAAGCCTATGTGCTTGGAAC  1171
      ||||||| |||||| |||| ||||||
seq2  AGCTCTGGAGCCTACGTGCCTGGAAC  1165