BAC Information

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BAC

Clone NameB6Ng01-152C10
Chromosome9 (Build37)
Map Location 48,303,180 - 48,411,148
singlet/doubletdoublet
Overlap geneRbm7, EG434402, Nnmt
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2
Downstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152C10.bB6Ng01-152C10.g
ACCDH947795DH947796
length1,0151,091
definitionDH947795|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C10, 5' end.DH947796|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,410,576 - 48,411,148)(48,303,180 - 48,304,287)
sequence
gaattcattacttaccatctataaagttagaatctttaggatctgggaga
cggtcagtgggtaaagtgcttgtcacagaggttgtcctttctccagtgtg
tcctcttagcatctttattgaaaaccagctggctgcagattcatggctta
gtcctatactgtctattctgttccattattctgtgttctctggctggtga
tgttttgtggaaagactttgctggtttgatgatatagtttttttgttgtt
gttgttgctgctgctgctgctgttgttgaagctaagtagtgtgtgatttc
tgatattttcttggtgctatttgggctttgtgtgtacggttgcctaaaaa
ttctagaattgttttctagtcctgtcattagtattttaagaggaatggca
ttggctacactaattgctttgggtagtatggacatattcatgatcttgat
tcttcagatcagcgaacagatctttccattttgatggtgtctgcactatt
cttctccattgatgttttcagtgtaaagatcattggcttgttttagcaaa
attcattttgaatttatatattatatttattaataaatacattaataaaa
taatattaaatattacattttatttatttttaatagctattgcaatagga
ttgacttcttgatttctgaatcaaataattctctattggggcacagatac
tcagatgaaggttctgaaaagctagtgcttcttggtttaatgtttaaagg
aactagcatctatccatccattcatctgtccatccatccatccatccatc
catccatccatccatccatccatctacttacccactcatctttttgtcaa
tccattcaccacccacatatccatccatccatccatccatccatccatcc
atccatccatccatccatttatccatctacttacccactcatctttttgt
catccattcacccatccacccacctatccatccatccatccatccatgta
tccatccatccatcc
gaattccggctcggcgcgctccgctccttggcccggcctgtgaatgccac
agccgccctaggaccgtgcccgccccttacctggtggaacagctcgaaga
ggagctcctctgtcaccttcgtctccaggttacccacgaacagagtgcgg
tcggcctctgcggccgccgcccccatctccgcgctgttccagtcccaggc
ctaggctgcctgctcagggccgaccgaccctactgcgcaccctcagaaac
actcacgtcctcccgttcagacgtcacgacgtaaaggcccgccgtgcgcg
agcgcagacgagctacgcacgcgcgcgggacaagcgcccgtttccggcgg
ctgctccttccgccgttgcgtgaaaaatggctactggggttggtaacggt
tgcgtctgacgcgggctggagtgacctgcggcgccgccgagggcccagtt
tgatcgacatacgtctagcaaacactgcaggcggtgtttgaagatggccc
agaactcggtgtcgctgtccgccggcgatcaagccaacaggatggcccac
cgatcctcccaaggagatctcaacccgtcggccatggcttgggcaatggt
ctccggagatagcttcctggttactaggctggatccgaatcagccgggac
ctcggccaccagcgcgacccagcgttcgggccgacagacgtcgagtccct
gtcggtggccgcagccggagccgaagccgccaaggcagattctcgcctta
cccgatcccaggcgtcaagctcgacctcttaagaagtgtgctgcagcagc
gtctggttgcactgggaactgctctcgcaacccgaatctcagcgtgaacg
aatgcctcccctcacttagcttacaacaaggcctctccaaaaatcatgtc
ttggtgtgacgcagttttattcttacgcattttcaccgatgtgggcggta
atataggctaccaaagaaaagttagccggcatgtgacaccatttaatctc
agactcggaaagcagctctgagtacaggctagccgttgtatcatatccag
ggcttatatatccatccatggtgggccagaaaggccaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48410576_48411148
seq2: B6Ng01-152C10.b_45_617 (reverse)

seq1  TAATATATAAATTCAAAATGAATTTTGCTAAAACAAGCCAATGATCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAAATTCAAAATGAATTTTGCTAAAACAAGCCAATGATCTTTA  50

seq1  CACTGAAAACATCAATGGAGAAGAATAGTGCAGACACCATCAAAATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAACATCAATGGAGAAGAATAGTGCAGACACCATCAAAATGGAA  100

seq1  AGATCTGTTCGCTGATCTGAAGAATCAAGATCATGAATATGTCCATACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTTCGCTGATCTGAAGAATCAAGATCATGAATATGTCCATACTA  150

seq1  CCCAAAGCAATTAGTGTAGCCAATGCCATTCCTCTTAAAATACTAATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCAATTAGTGTAGCCAATGCCATTCCTCTTAAAATACTAATGAC  200

seq1  AGGACTAGAAAACAATTCTAGAATTTTTAGGCAACCGTACACACAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGAAAACAATTCTAGAATTTTTAGGCAACCGTACACACAAAGCC  250

seq1  CAAATAGCACCAAGAAAATATCAGAAATCACACACTACTTAGCTTCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCACCAAGAAAATATCAGAAATCACACACTACTTAGCTTCAACA  300

seq1  ACAGCAGCAGCAGCAGCAACAACAACAACAAAAAAACTATATCATCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAGCAGCAGCAACAACAACAACAAAAAAACTATATCATCAAAC  350

seq1  CAGCAAAGTCTTTCCACAAAACATCACCAGCCAGAGAACACAGAATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTCTTTCCACAAAACATCACCAGCCAGAGAACACAGAATAATG  400

seq1  GAACAGAATAGACAGTATAGGACTAAGCCATGAATCTGCAGCCAGCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAATAGACAGTATAGGACTAAGCCATGAATCTGCAGCCAGCTGGT  450

seq1  TTTCAATAAAGATGCTAAGAGGACACACTGGAGAAAGGACAACCTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAAAGATGCTAAGAGGACACACTGGAGAAAGGACAACCTCTGTG  500

seq1  ACAAGCACTTTACCCACTGACCGTCTCCCAGATCCTAAAGATTCTAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACTTTACCCACTGACCGTCTCCCAGATCCTAAAGATTCTAACTT  550

seq1  TATAGATGGTAAGTAATGAATTC  573
      |||||||||||||||||||||||
seq2  TATAGATGGTAAGTAATGAATTC  573

seq1: chr9_48303180_48304287
seq2: B6Ng01-152C10.g_68_1158

seq1  GAATTCCGGCTCGGCGCGCTCCGCTCCTTGGCCCGGCCTGTGAATGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGCTCGGCGCGCTCCGCTCCTTGGCCCGGCCTGTGAATGCCAC  50

seq1  AGCCGCCCTAGGACCGTGCCCGCCCCTTACCTGGTGGAACAGCTCGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCCCTAGGACCGTGCCCGCCCCTTACCTGGTGGAACAGCTCGAAGA  100

seq1  GGAGCTCCTCTGTCACCTTCGTCTCCAGGTTACCCACGAACAGAGTGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCTCTGTCACCTTCGTCTCCAGGTTACCCACGAACAGAGTGCGG  150

seq1  TCGGCCTCTGCGGCCGCCGCCCCCATCTCCGCGCTGTTCCAGTCCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCTCTGCGGCCGCCGCCCCCATCTCCGCGCTGTTCCAGTCCCAGGC  200

seq1  CTAGGCTGCCTGCTCAGGGCCGACCGACCCTACTGCGCACCCTCAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGCCTGCTCAGGGCCGACCGACCCTACTGCGCACCCTCAGAAAC  250

seq1  ACTCACGTCCTCCCGTTCAGACGTCACGACGTAAAGGCCCGCCGTGCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGTCCTCCCGTTCAGACGTCACGACGTAAAGGCCCGCCGTGCGCG  300

seq1  AGCGCAGACGAGCTACGCACGCGCGCGGGACAAGCGCCCGTTTCCGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGACGAGCTACGCACGCGCGCGGGACAAGCGCCCGTTTCCGGCGG  350

seq1  CTGCTCCTTCCGCCGTTGCGTGAAAAATGGCTACTGGGGTTGGTAACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTTCCGCCGTTGCGTGAAAAATGGCTACTGGGGTTGGTAACGGT  400

seq1  TGCGTCTGACGCGGGCTGGAGTGACCTGCGGCGCCGCCGAGGGCCCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTGACGCGGGCTGGAGTGACCTGCGGCGCCGCCGAGGGCCCAGTT  450

seq1  TGATCGACATACGTCTAGCAAACACTGCAGGCGGTGTTTGAAGATGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGACATACGTCTAGCAAACACTGCAGGCGGTGTTTGAAGATGGCCC  500

seq1  AGAACTCGGTGTCGCTGTCCGCCGGCGATCAAGCCAACAGGATGGCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCGGTGTCGCTGTCCGCCGGCGATCAAGCCAACAGGATGGCCCAC  550

seq1  CGATCCTCCCAAGGAGATCTCAACCCGTCGGCCATGGCTTGGGCAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTCCCAAGGAGATCTCAACCCGTCGGCCATGGCTTGGGCAATGGT  600

seq1  CTCCGGAGATAGCTTCCTGGTTACTAGGCTGGATCCGAATCAGCCGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGAGATAGCTTCCTGGTTACTAGGCTGGATCCGAATCAGCCGGGAC  650

seq1  CTCGGCCACCAGCGCGACCCAGCGTTCGGGCCGACAGACGTCGAGTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCACCAGCGCGACCCAGCGTTCGGGCCGACAGACGTCGAGTCCCT  700

seq1  GTCGGTGGCCGCAGCCGGAGCCGAAGCCGCCAAGGCAGATTCTCGCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGGCCGCAGCCGGAGCCGAAGCCGCCAAGGCAGATTCTCGCCTTA  750

seq1  CCCGATCCCAGGCGTCAAGCTCGACCTCTTAAGAAGTGTGCTGCAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCCCAGGCGTCAAGCTCGACCTCTTAAGAAGTGTGCTGCAGCAGC  800

seq1  GTCTGGTTGCACTGGGAACTGCTCTCGCAACCCGAATCTCAGCGTAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTGGTTGCACTGGGAACTGCTCTCGCAACCCGAATCTCAGCGT-GAAC  849

seq1  GAATGCCTCCCCTCACTTAGCTTACAAACAAGGCCTCTCCAAAAATCATG  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATGCCTCCCCTCACTTAGCTTAC-AACAAGGCCTCTCCAAAAATCATG  898

seq1  TCTTGGTGTGACGGCAGTTTTATTCTTACGCATTTTCACCGATGTGGGCG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGTGAC-GCAGTTTTATTCTTACGCATTTTCACCGATGTGGGCG  947

seq1  GTTAATATAGGCTACCAAAGAAAAGTTTAGCCGGGCATAGTGACACACAT  1000
      | ||||||||||||||||||||||| |||||| ||||| ||||||| || 
seq2  G-TAATATAGGCTACCAAAGAAAAG-TTAGCC-GGCAT-GTGACAC-CA-  991

seq1  TTTTAATCTCAAGACTCGGAAAGCAGGCTCTGAGTTACAGGCTAGCCGTT  1050
       ||||||||| |||||||||||||| |||||||| ||||||||||||| |
seq2  -TTTAATCTC-AGACTCGGAAAGCA-GCTCTGAG-TACAGGCTAGCCG-T  1036

seq1  TGTTACATAGTCGAGGGGCTTA-ATATCCATCCATGTGGGGCCAAGAAGA  1099
      |||  |||| || | ||||||| |||||||||||||  ||||| |||| |
seq2  TGTATCATA-TCCA-GGGCTTATATATCCATCCATGGTGGGCC-AGAA-A  1082

seq1  GGCCAGGAG  1108
      |||||||||
seq2  GGCCAGGAG  1091