BAC Information

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BAC

Clone NameB6Ng01-152I09
Chromosome9 (Build37)
Map Location 121,733,285 - 121,855,676
singlet/doubletdoublet
Overlap geneCcdc13, Higd1a, Ccbp2, Cyp8b1
Upstream geneCtnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl
Downstream geneC730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152I09.bB6Ng01-152I09.g
ACCDH948077DH948078
length1,0791,191
definitionDH948077|Mus musculus domesticus DNA, BAC clone: B6Ng01-152I09, 5' end.DH948078|Mus musculus domesticus DNA, BAC clone: B6Ng01-152I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,854,583 - 121,855,676)(121,733,285 - 121,734,474)
sequence
gaattcaacacccccataaatctggtcaggcgacttcaaaacagacaagg
agacaagtgacagagacagactaggagacgagtgacagagacagacgaca
aggagacaagagacagagacagactaggagacgagtgacagagacaagag
acgggaaatcctgaggggagggcgaagaggcctcagttattgaaatactt
ttacttcatgttgccccagaagacaagggaaatttttttcttgatgacac
acttttaaaatcaccaaaatatggctcccatctggttaatggttctaagt
gtccctgctacaataggagattttgcagacaatggaggaagagaaagaac
acagctgaagaacagatccgggttagtgcctgaagtaaaataaccagatt
ctcagcctatgaggtgaagacaaggccttctataaggcccatttcttaag
gtttatttttatacacatggtgcataaatccccaaaagggtgtcagattc
ccaggaattggaattataggcagttatgagctacctgatatgggtgctgg
aaaccaaaacttgggttctgagcaagagcagtgtggtacttggtcctgag
ttatcagaactgttttggaagggtgtggccttgttggaaggggtgtcatt
ggggatgagcctcaaggtcatttctctgtctgctcttcctctcttcccct
ctgcctcatgctttcacacaaggatgcaagctcatagctactgttctacc
accatgcctcctcctgcagccacactccttactatgatgatcatggaccc
ctgctgaaagcaagatcccaattagatgctttcttttataaaggtgtctc
ttcgtagcaatattaaactaagacaacagccagttgtcttaactgctaag
ttatctctccagctccaagcccatttcttcaaactatcatagcaacctaa
gaaaaaaaatgaatgattataattagccctttgaggatgcatcaattttg
atccaaaaaatcctacagatcaccatattcccatcaaaatccacacactt
ttttcacgggttgaaagaaccctataaac
gaattcagtcttagtaccatgtaaacagctggcatgatgccaagagcttg
taatgccaatgctgggcagggacagaagatccagtctaatccggctaaat
agctcaaccagccagcctgtactgagtactgagcttgggaccaaagagag
accctgtctcaaaggagtggatgacgttcctgatgacccatgagattgtc
ctctggcttctccatgtatgaatgtgcaggtgcacacctcacatgtatgt
gtacacacacacacacacacacacacacacacacacatatacacacacac
atacacacacacacatacacacacacatacacacacacacacacacacac
atacacacacacacacacatatacacacacactgaagggaaaagaacaga
attgttctgggcaaccaggagcaagcctgtctgtctgcaaagcaaggagt
agtagctgtcaccctgtaaagagactactgcagagcggatcagcctggga
gcaggcatctaagtggaccatcctttcctcctggtctgtgttcccagggc
ttagaggctatagctgtatagtcccctgacccccatgcaaagtggcttag
atctgggccttccttggcccctgccaggcattctgggcaaaagacataga
ccggatctgttgcttgggactgctctaaggctacaatggcagagaagagc
cctttggcttggaactgtggcagagtatctgagagcacactggggaaagg
ggaggcccaggtcatggctacctcacagacgcagcataaaggagaacaca
taccaagctctgtctcccgtctgggtcttcagtggcttagcccctgcatc
agtggcccccttggatggtggcttggctgacgccatctgcagctggaaaa
gcaaacgtggcacttagacttggttctgctcagcagctgcacagccagtc
gaagcacccagtgctgctggatgtgtggggcaacctgtcctagtggtctg
agtttcttgctcacatgtgggaaacactaaggaatgctcttttcaagcta
cttgtgacagggagaggttggtcggtaatcaccctaatttctctgagagg
ggaggcccaagatcagtagaccgtaaaaagtaaccccgttcgactatctt
ctcatgggagatttgatgagaaaatggtcctagactcttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121854583_121855676
seq2: B6Ng01-152I09.b_47_1125 (reverse)

seq1  GTTTATTAGTGTTCTTTCAACACCTGTAAAAAAAGTGTGTTGGAATTTTG  50
      ||||| ||| |||||||||  ||| || ||||||||||||  | ||||||
seq2  GTTTA-TAGGGTTCTTTCA--ACCCGTGAAAAAAGTGTGT--GGATTTTG  45

seq1  ATGGGAATTATGTTGATTCTGTAGATTTTTTTTTAGATCAAAATCTGATG  100
      ||||||| |||| ||| |||||||    |||||| ||||||||| |||||
seq2  ATGGGAA-TATGGTGA-TCTGTAG--GATTTTTTGGATCAAAAT-TGATG  90

seq1  CATACTTCAAAGGGCTAATTATAATCATTCATTTTTTTTTCCTTAGGTTG  150
      ||| | |||||||||||||||||||||||||||||||||  |||||||||
seq2  CAT-CCTCAAAGGGCTAATTATAATCATTCATTTTTTTT--CTTAGGTTG  137

seq1  CTATGATATGTTTGAAGAAATGGGCCTTGGAGCTGGAGAGATAACTTAGC  200
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CTATGATA-GTTTGAAGAAATGGG-CTTGGAGCTGGAGAGATAACTTAGC  185

seq1  AGTTAAGACAACTGGCTGTTGTCTTAGTTTAATATTGCTACGAAGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGACAACTGGCTGTTGTCTTAGTTTAATATTGCTACGAAGAGACA  235

seq1  CCTTTATAAAAGAAAGCATCTAATTGGGATCTTGCTTTCAGCAGGGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAAAAGAAAGCATCTAATTGGGATCTTGCTTTCAGCAGGGGTCC  285

seq1  ATGATCATCATAGTAAGGAGTGTGGCTGCAGGAGGAGGCATGGTGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATCATAGTAAGGAGTGTGGCTGCAGGAGGAGGCATGGTGGTAGA  335

seq1  ACAGTAGCTATGAGCTTGCATCCTTGTGTGAAAGCATGAGGCAGAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCTATGAGCTTGCATCCTTGTGTGAAAGCATGAGGCAGAGGGGA  385

seq1  AGAGAGGAAGAGCAGACAGAGAAATGACCTTGAGGCTCATCCCCAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAGAGCAGACAGAGAAATGACCTTGAGGCTCATCCCCAATGAC  435

seq1  ACCCCTTCCAACAAGGCCACACCCTTCCAAAACAGTTCTGATAACTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCCAACAAGGCCACACCCTTCCAAAACAGTTCTGATAACTCAGG  485

seq1  ACCAAGTACCACACTGCTCTTGCTCAGAACCCAAGTTTTGGTTTCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTACCACACTGCTCTTGCTCAGAACCCAAGTTTTGGTTTCCAGCA  535

seq1  CCCATATCAGGTAGCTCATAACTGCCTATAATTCCAATTCCTGGGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCAGGTAGCTCATAACTGCCTATAATTCCAATTCCTGGGAATCT  585

seq1  GACACCCTTTTGGGGATTTATGCACCATGTGTATAAAAATAAACCTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTTTTGGGGATTTATGCACCATGTGTATAAAAATAAACCTTAAG  635

seq1  AAATGGGCCTTATAGAAGGCCTTGTCTTCACCTCATAGGCTGAGAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCCTTATAGAAGGCCTTGTCTTCACCTCATAGGCTGAGAATCTG  685

seq1  GTTATTTTACTTCAGGCACTAACCCGGATCTGTTCTTCAGCTGTGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTACTTCAGGCACTAACCCGGATCTGTTCTTCAGCTGTGTTCTT  735

seq1  TCTCTTCCTCCATTGTCTGCAAAATCTCCTATTGTAGCAGGGACACTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTCCATTGTCTGCAAAATCTCCTATTGTAGCAGGGACACTTAG  785

seq1  AACCATTAACCAGATGGGAGCCATATTTTGGTGATTTTAAAAGTGTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAACCAGATGGGAGCCATATTTTGGTGATTTTAAAAGTGTGTCA  835

seq1  TCAAGAAAAAAATTTCCCTTGTCTTCTGGGGCAACATGAAGTAAAAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAAAAATTTCCCTTGTCTTCTGGGGCAACATGAAGTAAAAGTAT  885

seq1  TTCAATAACTGAGGCCTCTTCGCCCTCCCCTCAGGATTTCCCGTCTCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAACTGAGGCCTCTTCGCCCTCCCCTCAGGATTTCCCGTCTCTTG  935

seq1  TCTCTGTCACTCGTCTCCTAGTCTGTCTCTGTCTCTTGTCTCCTTGTCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCACTCGTCTCCTAGTCTGTCTCTGTCTCTTGTCTCCTTGTCGT  985

seq1  CTGTCTCTGTCACTCGTCTCCTAGTCTGTCTCTGTCACTTGTCTCCTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCACTCGTCTCCTAGTCTGTCTCTGTCACTTGTCTCCTTGT  1035

seq1  CTGTTTTGAAGTCGCCTGACCAGATTTATGGGGGTGTTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGAAGTCGCCTGACCAGATTTATGGGGGTGTTGAATTC  1079

seq1: chr9_121733285_121734474
seq2: B6Ng01-152I09.g_68_1258

seq1  GAATTCAGTCTTAGTACCATGTAAACAGCTGGCATGATGCCAAGAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTAGTACCATGTAAACAGCTGGCATGATGCCAAGAGCTTG  50

seq1  TAATGCCAATGCTGGGCAGGGACAGAAGATCCAGTCTAATCCGGCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAATGCTGGGCAGGGACAGAAGATCCAGTCTAATCCGGCTAAAT  100

seq1  AGCTCAACCAGCCAGCCTGTACTGAGTACTGAGCTTGGGACCAAAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAACCAGCCAGCCTGTACTGAGTACTGAGCTTGGGACCAAAGAGAG  150

seq1  ACCCTGTCTCAAAGGAGTGGATGACGTTCCTGATGACCCATGAGATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAGGAGTGGATGACGTTCCTGATGACCCATGAGATTGTC  200

seq1  CTCTGGCTTCTCCATGTATGAATGTGCAGGTGCACACCTCACATGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTTCTCCATGTATGAATGTGCAGGTGCACACCTCACATGTATGT  250

seq1  GTACACACACACACACACACACACACACACACACACATATACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACACACACACACACACACACACACACACACATATACACACACAC  300

seq1  ATACACACACACACATACACACACACATACACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACATACACACACACATACACACACACACACACACACAC  350

seq1  ATACACACACACACACACATATACACACACACTGAAGGGAAAAGAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACATATACACACACACTGAAGGGAAAAGAACAGA  400

seq1  ATTGTTCTGGGCAACCAGGAGCAAGCCTGTCTGTCTGCAAAGCAAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTGGGCAACCAGGAGCAAGCCTGTCTGTCTGCAAAGCAAGGAGT  450

seq1  AGTAGCTGTCACCCTGTAAAGAGACTACTGCAGAGCGGATCAGCCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGTCACCCTGTAAAGAGACTACTGCAGAGCGGATCAGCCTGGGA  500

seq1  GCAGGCATCTAAGTGGACCATCCTTTCCTCCTGGTCTGTGTTCCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATCTAAGTGGACCATCCTTTCCTCCTGGTCTGTGTTCCCAGGGC  550

seq1  TTAGAGGCTATAGCTGTATAGTCCCCTGACCCCCATGCAAAGTGGCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGCTATAGCTGTATAGTCCCCTGACCCCCATGCAAAGTGGCTTAG  600

seq1  ATCTGGGCCTTCCTTGGCCCCTGCCAGGCATTCTGGGCAAAAGACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCCTTCCTTGGCCCCTGCCAGGCATTCTGGGCAAAAGACATAGA  650

seq1  CCGGATCTGTTGCTTGGGACTGCTCTAAGGCTACAATGGCAGAGAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCTGTTGCTTGGGACTGCTCTAAGGCTACAATGGCAGAGAAGAGC  700

seq1  CC-TTGGCTGGGAACTGTGGCAGAGTATCTGAGAGCACACTGGGG-AAGG  748
      || |||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTGGCTTGGAACTGTGGCAGAGTATCTGAGAGCACACTGGGGAAAGG  750

seq1  GGAGGCCCAGGTCATGGCTACCTCACAGACGCAGCATAAAGGAGAACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCAGGTCATGGCTACCTCACAGACGCAGCATAAAGGAGAACACA  800

seq1  TACCAAAGCTCTGTCTCCCGTCTGGGTCTTCAGTGGCTTAGCCCCTGCAT  848
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACC-AAGCTCTGTCTCCCGTCTGGGTCTTCAGTGGCTTAGCCCCTGCAT  849

seq1  CAGTGGCCCCCTTGGATGGTGGCTTGGCTGACGCCATCTGCAGCTGGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCCCCTTGGATGGTGGCTTGGCTGACGCCATCTGCAGCTGGAAA  899

seq1  AGCAAACGCGGCACTAAGACTTGGTTCTGCTCAGCAGCTGCACAGCCAGC  948
      |||||||| |||||| ||||||||||||||||||||||||||||||||| 
seq2  AGCAAACGTGGCACTTAGACTTGGTTCTGCTCAGCAGCTGCACAGCCAGT  949

seq1  CGAAGCACCCAGTGCTGCTGGATGTGT-GGGCCACCTGTCCTAGT-GTCT  996
      ||||||||||||||||||||||||||| |||| |||||||||||| ||||
seq2  CGAAGCACCCAGTGCTGCTGGATGTGTGGGGCAACCTGTCCTAGTGGTCT  999

seq1  GAG-TTCTTGCTCACATGTGG--AACACTAAGGAATGCTCCTTTCCAAGC  1043
      ||| |||||||||||||||||  |||||||||||||||| |||| |||||
seq2  GAGTTTCTTGCTCACATGTGGGAAACACTAAGGAATGCT-CTTTTCAAGC  1048

seq1  TACTTGTGACA-GGAGAGGTTTGCCTGGTAATCAACCCTATTTCCTAGGA  1092
      ||||||||||| ||||||||| | | ||||||| |||||| || ||  ||
seq2  TACTTGTGACAGGGAGAGGTTGGTC-GGTAATC-ACCCTAATTTCTCTGA  1096

seq1  -AGGGCAGCCCAAAGATCTGTTAAGACCTTAATAAATGACCACAGTTCAG  1141
       |||| || || |||||| ||  ||||| ||| || | ||| | |||| |
seq2  GAGGGGAGGCCCAAGATCAGT--AGACCGTAAAAAGTAACC-CCGTTC-G  1142

seq1  TCATACTTTCT-AGGGTAGTTTGAAT--GAAAATGGCCCCATAGACTCTT  1188
       | ||  |||| | || || ||  ||  |||||||| ||  |||||||||
seq2  AC-TATCTTCTCATGGGAGATTTGATGAGAAAATGGTCC--TAGACTCTT  1189

seq1  AG  1190
      ||
seq2  AG  1191