BAC Information

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BAC

Clone NameB6Ng01-152K03
Chromosome9 (Build37)
Map Location 15,079,396 - 15,208,408
singlet/doubletdoublet
Overlap geneCrsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik
Downstream geneLOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K03.bB6Ng01-152K03.g
ACCDH948160DH948161
length1,0911,126
definitionDH948160|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K03, 5' end.DH948161|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,079,396 - 15,080,487)(15,207,281 - 15,208,408)
sequence
gaattccaggtcaaggagaaatagaaataaaaccaaacaacgtaacattt
tgtgagcatggtgacagacacctgcacctgtcctaaagacatccctctga
cctgtcctctacagaccacatactattctctccgagttttgataaaatga
attcggcatcagaaagacaaaccaacagtgctcacagtactattttttca
gccagctcctctggtttgatgtgcagcacctctatgcaggtcagaaatct
aaggaacggttacattagtggatggttaagtgtaatgcctatctaacaaa
acacattcaggatcttcttgcaattaaagagtgcaactaaactcttccat
aatctcaaaggatcaacccaaagaacaattaagcacttgcccttaattat
ctgggggaaagaagttacaatgtctaaaaccagaaagcaccaatttatct
tgtagtgggactcatatcagtgctgggacactgaccccagattgtgtttt
agtaacagcctgacaaggaatcttcaacatatctattactgttcttaagc
atcccagcaggacagctcggccatctcccactgtactccaaaccttaaac
aagctgcctttcaactttctcttcaatgtagctaccacactacagtaaga
ctggtctgtcacgggattttcaagatagggtctcatgtaggcaaagttgg
ccttgaactcttgaccctcctgcctcagcctccaagtgttaggacaccag
gcatgtaataccaagttctaccaagttctgccaagaatggtttgggctta
caggtaaagacattaaatatcattgtccaacagggagatgagaagtgatc
ctggcggaggctaggagactgggcagacatcgatcgatctgtacctgcac
ttctgtagctcagtcacccaggatctgtcgccaccttcctcagcttccag
tgctgccggagtcctcagagctcagaattgaagtctcgctggagcttgtt
ttcctggttctcaaccactgacttggtcagtctttctgcccccttctagt
aggatctgagctcgcttcagcgagggaacttctcctggaga
gaattctgattctgtctcttaggaccagcatgcatgctaaaatgagcctg
gactgttttctggaaatggacaggccctacataaaagtggacaaggtccg
cagagagaatcagactgcctgaaggaatggtccttcagtgacaccttcaa
cactggggcccagttgaagagagaggccacatgaaagccaaatacagttg
tgcaaggactcagacagcagtggcacctgggggctaacctagtattgggg
atttgatttgtgcttacatggaaattcgcatatcctctgtgggtccctgc
ccacagttgtttttttgactagtcaataatgatccaacacaatggctggg
cagggagacagaggtgggacttttaggattccagggaagaaacacaggag
aggggaaaaaaggagtctgccatgagagggacataggatgaaccacagac
cacacaatgaaggagcaggggggtttgacaggaaatgtctcacccaaagg
caaagcaggcccatgggaggactgcccagaaggaaccagggtagcaaaga
taaaaatatagatttagaaagagttaactcgggaatacagtgacagcatc
aataagaaattattcttgttttcggaggcaacattttggggtgccttgtt
acccaggaatggataaaagacagtcatggcacaaaaggctaactctttgt
gattatattctccctagacaagagggcctgcttgttgccctgatatggta
cgtttgtaaagagaaataccaagatacttttcacgctgggccagaatacc
ttttttaaaaaaagatttggatattaacatgtaaatgaagagcttccctc
agggccacacggtcacgcacctttcctacctggattgctattctggttcc
tcaggcagtctgtatcttgaaagagaaagagaccaaggtaccatctttta
aaagaagaaaggagacatcagttcaaatcactcaaacttaggcaggacac
tttcacagcttaattagctcaggtgtcagagaataagtaatattctacct
gaattacttctcacagatgcagaccttcccaagagcttggaatggggaaa
tattctttccataatggcttagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15079396_15080487
seq2: B6Ng01-152K03.b_44_1134

seq1  GAATTCCAGGTCAAGGAGAAATAGAAATAAAACCAAACAACGTAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAAGGAGAAATAGAAATAAAACCAAACAACGTAACATTT  50

seq1  TGTGAGCATGGTGACAGACACCTGCACCTGTCCTAAAGACATCCCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCATGGTGACAGACACCTGCACCTGTCCTAAAGACATCCCTCTGA  100

seq1  CCTGTCCTCTACAGACCACATACTATTCTCTCCGAGTTTTGATAAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCTACAGACCACATACTATTCTCTCCGAGTTTTGATAAAATGA  150

seq1  ATTCGGCATCAGAAAGACAAACCAACAGTGCTCACAGTACTATTTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGCATCAGAAAGACAAACCAACAGTGCTCACAGTACTATTTTTTCA  200

seq1  GCCAGCTCCTCTGGTTTGATGTGCAGCACCTCTATGCAGGTCAGAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCTCTGGTTTGATGTGCAGCACCTCTATGCAGGTCAGAAATCT  250

seq1  AAGGAACGGTTACATTAGTGGATGGTTAAGTGTAATGCCTATCTAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACGGTTACATTAGTGGATGGTTAAGTGTAATGCCTATCTAACAAA  300

seq1  ACACATTCAGGATCTTCTTGCAATTAAAGAGTGCAACTAAACTCTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCAGGATCTTCTTGCAATTAAAGAGTGCAACTAAACTCTTCCAT  350

seq1  AATCTCAAAGGATCAACCCAAAGAACAATTAAGCACTTGCCCTTAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAAGGATCAACCCAAAGAACAATTAAGCACTTGCCCTTAATTAT  400

seq1  CTGGGGGAAAGAAGTTACAATGTCTAAAACCAGAAAGCACCAATTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAAAGAAGTTACAATGTCTAAAACCAGAAAGCACCAATTTATCT  450

seq1  TGTAGTGGGACTCATATCAGTGCTGGGACACTGACCCCAGATTGTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGGACTCATATCAGTGCTGGGACACTGACCCCAGATTGTGTTTT  500

seq1  AGTAACAGCCTGACAAGGAATCTTCAACATATCTATTACTGTTCTTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGCCTGACAAGGAATCTTCAACATATCTATTACTGTTCTTAAGC  550

seq1  ATCCCAGCAGGACAGCTCGGCCATCTCCCACTGTACTCCAAACCTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAGGACAGCTCGGCCATCTCCCACTGTACTCCAAACCTTAAAC  600

seq1  AAGCTGCCTTTCAACTTTCTCTTCAATGTAGCTACCACACTACAGTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCTTTCAACTTTCTCTTCAATGTAGCTACCACACTACAGTAAGA  650

seq1  CTGGTCTGTCACGGGATTTTCAAGATAGGGTCTCATGTAGGCAAAGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTCACGGGATTTTCAAGATAGGGTCTCATGTAGGCAAAGTTGG  700

seq1  CCTTGAACTCTTGACCCTCCTGCCTCAGCCTCCAAGTGTTAGGACACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCTTGACCCTCCTGCCTCAGCCTCCAAGTGTTAGGACACCAG  750

seq1  GCATGTAATACCAAGTTCTACCAAGTTCTGCCAAGAATGGTTTGGGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAATACCAAGTTCTACCAAGTTCTGCCAAGAATGGTTTGGGCTTA  800

seq1  CAGGTAAAGACATTAAATATCATTGTCCAACAGGGAGATGAGAAGTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGACATTAAATATCATTGTCCAACAGGGAGATGAGAAGTGATC  850

seq1  CTGGCGGAGGCTAGGAGACTGGGCAGACATCGATCGATCTGTACCTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGAGGCTAGGAGACTGGGCAGACATCGATCGATCTGTACCTGCAC  900

seq1  TTCTGTAGCTCAGGTCACCCAGGATCTTGTCGCCCACCTTCCTCAGCTTC  950
      |||||||||||| ||||||||||||| ||||| |||||||||||||||||
seq2  TTCTGTAGCTCA-GTCACCCAGGATC-TGTCG-CCACCTTCCTCAGCTTC  947

seq1  CAGTGCTGCCGGAGT-CTCAGGAGCTCAGAATTGAAGTCTCGCTGGAGCT  999
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  CAGTGCTGCCGGAGTCCTCA-GAGCTCAGAATTGAAGTCTCGCTGGAGCT  996

seq1  TGTTTTCCTGGTTCTCAGCCACTGACTTGGTCAGTCTTTCTGCCCCCTTC  1049
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGGTTCTCAACCACTGACTTGGTCAGTCTTTCTGCCCCCTTC  1046

seq1  -AGTAGGATCTGAGCT-GCTCCAGCGAGGG-ACTTCTTCTTGGAGA  1092
       ||||||||||||||| ||| ||||||||| ||||| || ||||||
seq2  TAGTAGGATCTGAGCTCGCTTCAGCGAGGGAACTTC-TCCTGGAGA  1091

seq1: chr9_15207281_15208408
seq2: B6Ng01-152K03.g_69_1194 (reverse)

seq1  CTTTCTCAG-CATTATGGGAAAGAATATTTTCCCCT--CCAGCTCTTGGG  47
      |||||| || |||||| ||||||||||||| ||| |  | ||||||||||
seq2  CTTTCTAAGCCATTAT-GGAAAGAATATTTCCCCATTCCAAGCTCTTGGG  49

seq1  AAGGTCTGCATCCTGTGAG-AGTAAATCAGGTAGAATATTACCTAATTTC  96
      ||||||||||| ||||||| ||||| |||||||||||||||| || | ||
seq2  AAGGTCTGCAT-CTGTGAGAAGTAATTCAGGTAGAATATTACTTATTCTC  98

seq1  TGACAAACTGAGCTAATTAAGCTGTGGAAAGTGTCCTGCCTAAGTTTGAA  146
      |||| | |||||||||||||||||| |||||||||||||||||||||| |
seq2  TGAC-ACCTGAGCTAATTAAGCTGT-GAAAGTGTCCTGCCTAAGTTTG-A  145

seq1  GTGATTGGAACTGATGTCTCCCTTTCTTCTTTTAAAAGATGGTACCTTGG  196
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGATTTGAACTGATGTCT-CCTTTCTTCTTTTAAAAGATGGTACCTTGG  194

seq1  TCTTCTTTCTCTTTCAAGATACAGACTGCCTGAGGAACCAGAATAGCAAT  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TCTTTCTCTTTCAAGATACAGACTGCCTGAGGAACCAGAATAGCAAT  243

seq1  CCAGGTAGGAAAGGTGCGTGACCGTGTGGCCCTGAGGGAAGCTCTTCATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGGAAAGGTGCGTGACCGTGTGGCCCTGAGGGAAGCTCTTCATT  293

seq1  TACATGTTAATATCCAAATCTTTTTTTAAAAAAGGTATTCTGGCCCAGCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTAATATCCAAATCTTTTTTTAAAAAAGGTATTCTGGCCCAGCG  343

seq1  TGAAAAGTATCTTGGTATTTCTCTTTACAAACGTACCATATCAGGGCTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAAAAGTATCTTGGTATTTCTCTTTACAAACGTACCATATCAGGGCAAC  393

seq1  AAGCAGGCCCTCTTGTCTAGGGAGAATATAATCAC-AAGAGTTAGCCTTT  445
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGCAGGCCCTCTTGTCTAGGGAGAATATAATCACAAAGAGTTAGCCTTT  443

seq1  TGTGCCATGACTGTCTTTTATCCATTCCTGGGTAACAAGGCACCCCAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATGACTGTCTTTTATCCATTCCTGGGTAACAAGGCACCCCAAAA  493

seq1  TGTTGCCTCCGAAAACAAGAATAATTTCTTATTGATGCTGTCACTGTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTCCGAAAACAAGAATAATTTCTTATTGATGCTGTCACTGTATT  543

seq1  CCCGAGTTAACTCTTTCTAAATCTATATTTTTATCTTTGCTACCCTGGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTTAACTCTTTCTAAATCTATATTTTTATCTTTGCTACCCTGGTT  593

seq1  CCTTCTGGGCAGTCCTCCCATGGGCCTGCTTTGCCTTTGGGTGAGACATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGGCAGTCCTCCCATGGGCCTGCTTTGCCTTTGGGTGAGACATT  643

seq1  TCCTGTCAAACCCCCCTGCTCCTTCATTGTGTGGTCTGTGGTTCATCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAAACCCCCCTGCTCCTTCATTGTGTGGTCTGTGGTTCATCCTA  693

seq1  TGTCCCTCTCATGGCAGACTCCTTTTTTCCCCTCTCCTGTGTTTCTTCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTCATGGCAGACTCCTTTTTTCCCCTCTCCTGTGTTTCTTCCC  743

seq1  TGGAATCCTAAAAGTCCCACCTCTGTCTCCCTGCCCAGCCATTGTGTTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCTAAAAGTCCCACCTCTGTCTCCCTGCCCAGCCATTGTGTTGG  793

seq1  ATCATTATTGACTAGTCAAAAAAACAACTGTGGGCAGGGACCCACAGAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTGACTAGTCAAAAAAACAACTGTGGGCAGGGACCCACAGAGG  843

seq1  ATATGCGAATTTCCATGTAAGCACAAATCAAATCCCCAATACTAGGTTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGAATTTCCATGTAAGCACAAATCAAATCCCCAATACTAGGTTAG  893

seq1  CCCCCAGGTGCCACTGCTGTCTGAGTCCTTGCACAACTGTATTTGGCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGGTGCCACTGCTGTCTGAGTCCTTGCACAACTGTATTTGGCTTT  943

seq1  CATGTGGCCTCTCTCTTCAACTGGGCCCCAGTGTTGAAGGTGTCACTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGCCTCTCTCTTCAACTGGGCCCCAGTGTTGAAGGTGTCACTGAA  993

seq1  GGACCATTCCTTCAGGCAGTCTGATTCTCTCTGCGGACCTTGTCCACTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTCCTTCAGGCAGTCTGATTCTCTCTGCGGACCTTGTCCACTTT  1043

seq1  TATGTAGGGCCTGTCCATTTCCAGAAAACAGTCCAGGCTCATTTTAGCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGGCCTGTCCATTTCCAGAAAACAGTCCAGGCTCATTTTAGCAT  1093

seq1  GCATGCTGGTCCTAAGAGACAGAATCAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  GCATGCTGGTCCTAAGAGACAGAATCAGAATTC  1126