BAC Information

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BAC

Clone NameB6Ng01-152K19
Chromosome9 (Build37)
Map Location 43,981,544 - 44,107,870
singlet/doubletdoublet
Overlap geneCbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf
Upstream genePou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam
Downstream geneTmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K19.bB6Ng01-152K19.g
ACCDH948192DH948193
length1,054973
definitionDH948192|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K19, 5' end.DH948193|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,981,544 - 43,982,604)(44,106,883 - 44,107,870)
sequence
gaattcaccgtaaaaggaacctaatatgaacatgaaaataaatttatttt
ggtcaataatttctggtcaataatactcagaaatactctaaactaggaga
aggaggactgtgtttttgacactagatagctactgctctttatgtaaagc
ggggagggcttcaagaattatttttctctagcaacaaatgaaagatggaa
ataatgtcttacatctctctccaatcaaatgtcacacagcaaataagaag
aaaccccacagtcaactctctgagcttacgctgacagggctatatttact
tttagggagacagttagaggatgcaccaagcaaacataaaaactttgcac
agccacaaccacacaatcagaatagaaaggcagggctggagagatggctc
agcagttaagagcactggctgctcttccaagaggtcctgagttcaaatcc
cagcaaccacatggtggctcacaaccatctgtaatgagatatgactccct
tttctggagtgtctgaagacagctacagtgtacttacatataataaataa
ataaagatctttaaaaaaaagaatagaaaggcaatatccatgtaggattt
cctctctgcagaaacttttttttttttttttttttttttttttttgggtt
ttcgagacagggtttctccgcatagctctggctgtcctggagctcacttt
gtagaacaaggctggcctcgaactcagaaatccgcctgcctctgcctccc
cagcgctgggattaaaggcgtgtgccaccacgcccccgcagaaacatttt
ttagaataaaaaatataaagtagttcattcaagacaaaagcattatcaat
aactaatttaaatctactgacctaccaatataatattcactataccagac
ttcgtgaaaactgtcaaacccttgaaatatcccacgtattggctttctcg
ccatttccatttcaacaatccctctccttcttgaaaacaagactttgaaa
actcaccttgaagggctgattagatgggccactgttaggagataaggagc
acac
gaattctcctgcttgtggcaggaatgtggcttttgctctctggacagttc
tgccgacctcatccgccatgtctacttccactgctaccacaccaagctaa
aacagtgggggctgcaagccttacaaagccaggctgacctcagcccctgc
atcctggactttcagagccggaacgtcatccctgacacccctgaccattt
cctgtgcctgtgggaacattgcgaggtcagcagatagtgccagacatggg
gtggaaggaagctgggaaccttgactctttctggggtgccttatatttct
gagactcgtgctagtatatctcatctattcttgtgtaagtcctttgtctt
aaaacttggttgttcccacaagttaatttgggggagagcaagaggcccct
ttggacatgggtgagagtccctgtaaccattctcagtcctcaccccaagt
tgccccggcacagagtgtcttcgacaatcctgagtggttctatcggcatg
tggatgcgcacagcctgtgctgtgaataccaagctgtcagcaaggacaac
catgtggtgcagtgtggctggaaaggtagggtcacgcctctgctctggcc
tctgcttaaaaaacccctggaggtgtaaaggtctagaggagccagggatg
ggactagttcctgcaagactagcagactactggctggagaaacttggggg
taccaaagccaagttggggaagggtatttaaggatggaagatgatcagat
cttccttcccaggctgtacctgtactttcaaggaccggtgtaagcttcga
gaacacctccgcagcacacccaggagaagggggtggcctgtcccacctgt
gggggcatgttgcaacacaccaagttcttaatcacatcctcgcagacttc
attggtcgtagagttgagcgaaagggggagtggtggctttcatcctactt
gagtgaggacaagggattttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43981544_43982604
seq2: B6Ng01-152K19.b_43_1096

seq1  GAATTCACCGTAAAAGGAACCTAATATGAACATGAAAATAAATTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGTAAAAGGAACCTAATATGAACATGAAAATAAATTTATTTT  50

seq1  GGTCAATAATTTCTGGTCAATAATACTCAGAAATACTCTAAACTAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATAATTTCTGGTCAATAATACTCAGAAATACTCTAAACTAGGAGA  100

seq1  AGGAGGACTGTGTTTTTGACACTAGATAGCTACTGCTCTTTATGTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACTGTGTTTTTGACACTAGATAGCTACTGCTCTTTATGTAAAGC  150

seq1  GGGGAGGGCTTCAAGAATTATTTTTCTCTAGCAACAAATGAAAGATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCTTCAAGAATTATTTTTCTCTAGCAACAAATGAAAGATGGAA  200

seq1  ATAATGTCTTACATCTCTCTCCAATCAAATGTCACACAGCAAATAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCTTACATCTCTCTCCAATCAAATGTCACACAGCAAATAAGAAG  250

seq1  AAACCCCACAGTCAACTCTCTGAGCTTACGCTGACAGGGCTATATTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAGTCAACTCTCTGAGCTTACGCTGACAGGGCTATATTTACT  300

seq1  TTTAGGGAGACAGTTAGAGGATGCACCAAGCAAACATAAAAACTTTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGACAGTTAGAGGATGCACCAAGCAAACATAAAAACTTTGCAC  350

seq1  AGCCACAACCACACAATCAGAATAGAAAGGCAGGGCTGGAGAGATGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACCACACAATCAGAATAGAAAGGCAGGGCTGGAGAGATGGCTC  400

seq1  AGCAGTTAAGAGCACTGGCTGCTCTTCCAAGAGGTCCTGAGTTCAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGAGCACTGGCTGCTCTTCCAAGAGGTCCTGAGTTCAAATCC  450

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATATGACTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATATGACTCCCT  500

seq1  TTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA  550

seq1  ATAAAGATCTTTAAAAAAAAGAATAGAAAGGCAATATCCATGTAGGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATCTTTAAAAAAAAGAATAGAAAGGCAATATCCATGTAGGATTT  600

seq1  CCTCTCTGCAGAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCTCTGCAGAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT  650

seq1  TTCGAGACAGGGTTTCTCTGCATAGCTCTGGCTGTCCTGGAGCTCACTTT  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCCGCATAGCTCTGGCTGTCCTGGAGCTCACTTT  700

seq1  GTAG-ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  749
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  750

seq1  CAGCGCTGGGATTAAAGGCGTGTGCCACCACG-CCCGGCAGAAACATTTT  798
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  CAGCGCTGGGATTAAAGGCGTGTGCCACCACGCCCCCGCAGAAACATTTT  800

seq1  TTAGATTAAAAAATATAAAGTAGTTCATTCAAGACAAAAGCATTATCAAT  848
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAAAAAATATAAAGTAGTTCATTCAAGACAAAAGCATTATCAAT  850

seq1  AACT-ATTTAAATCTACAGACCTAACAAATATAATATTCACTATACCAGA  897
      |||| |||||||||||| ||||| || |||||||||||||||||||||||
seq2  AACTAATTTAAATCTACTGACCT-ACCAATATAATATTCACTATACCAGA  899

seq1  CTTCGTGAAAACTGTCAAAACCCTTTGAGATATTCCCACGTATTTGCTTT  947
      |||||||||||||||||||  || |||| ||| ||||||||||| |||||
seq2  CTTCGTGAAAACTGTCAAA--CCCTTGAAATA-TCCCACGTATTGGCTTT  946

seq1  TCTGCTATTTCTCATTTTCTACAATCTCTTCTCTTTCTTTGATAACAAGA  997
         || ||||| || |||| |||||| | |||| ||| |||| |||||||
seq2  CTCGCCATTTC-CA-TTTCAACAATC-CCTCTCCTTC-TTGAAAACAAGA  992

seq1  CTTTGAAAACT-ACCTTGAAATGGGCTGATGAGATGGCTCAGCAGTTAGG  1046
      ||||||||||| ||||||||  |||||||| ||||||  || | ||||||
seq2  CTTTGAAAACTCACCTTGAA--GGGCTGATTAGATGGGCCA-CTGTTAGG  1039

seq1  AGATTAGGAGCACAC  1061
      |||| ||||||||||
seq2  AGATAAGGAGCACAC  1054

seq1: chr9_44106883_44107870
seq2: B6Ng01-152K19.g_69_1041 (reverse)

seq1  GGGAAAATACCCTTGTCCTCACTTCAAGTAGGATAGATAGCCCACACTCC  50
      | |||||| ||||||||||||| ||||||||||| || ||||  ||||||
seq2  GAGAAAAT-CCCTTGTCCTCAC-TCAAGTAGGAT-GAAAGCCACCACTCC  47

seq1  CCCTCTCTGCTCCAACTTCTTACGATCCAATGAGGTCTGGCGACGGATGT  100
      |||| || ||| |||||   ||||| ||||||| |||| |||| ||||||
seq2  CCCTTTC-GCT-CAACT--CTACGA-CCAATGAAGTCT-GCGA-GGATGT  90

seq1  GATCTAAGAACTTGGTGTTGTTGGCAAACATGCCCCCACAGGTGGGACAG  150
      ||| ||||||||||||| |||||   ||||||||||||||||||||||||
seq2  GAT-TAAGAACTTGGTG-TGTTG--CAACATGCCCCCACAGGTGGGACAG  136

seq1  GCCACCACCTTCTCCTGGGTGTGGCTGCGGAGGTGTTCTCGAAGCTTACA  200
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCACCCCCTTCTCCTGGGTGT-GCTGCGGAGGTGTTCTCGAAGCTTACA  185

seq1  CCGGTCCTTGAAGGTACAGGTACAGCCTGGGAAGGAAGATCTGATCATCT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCTTGAAAGTACAGGTACAGCCTGGGAAGGAAGATCTGATCATCT  235

seq1  TCCATCCTTAAATACCCTTCCCCAACTTGGCTTTGGTACCCCCAAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTTAAATACCCTTCCCCAACTTGGCTTTGGTACCCCCAAGTTTC  285

seq1  TCCAGCCAGTAGTCTGCTAGTCTTGCAGGAACTAGTCCCATCCCTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGTAGTCTGCTAGTCTTGCAGGAACTAGTCCCATCCCTGGCTC  335

seq1  CTCTAGACCTTTACACCTCCAGGGGTTTTTTAAGCAGAGGCCAGAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACCTTTACACCTCCAGGGGTTTTTTAAGCAGAGGCCAGAGCAGA  385

seq1  GGCGTGACCCTACCTTTCCAGCCACACTGCACCACATGGTTGTCCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGACCCTACCTTTCCAGCCACACTGCACCACATGGTTGTCCTTGCT  435

seq1  GACAGCTTGGTATTCACAGCACAGGCTGTGCGCATCCACATGCCGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTGGTATTCACAGCACAGGCTGTGCGCATCCACATGCCGATAGA  485

seq1  ACCACTCAGGATTGTCGAAGACACTCTGTGCCGGGGCAACTTGGGGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAGGATTGTCGAAGACACTCTGTGCCGGGGCAACTTGGGGTGAG  535

seq1  GACTGAGAATGGTTACAGGGACTCTCACCCATGTCCAAAGGGGCCTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAATGGTTACAGGGACTCTCACCCATGTCCAAAGGGGCCTCTTG  585

seq1  CTCTCCCCCAAATTAACTTGTGGGAACAACCAAGTTTTAAGACAAAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCAAATTAACTTGTGGGAACAACCAAGTTTTAAGACAAAGGAC  635

seq1  TTACACAAGAATAGATGAGATATACTAGCACGAGTCTCAGAAATATAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAGAATAGATGAGATATACTAGCACGAGTCTCAGAAATATAAGG  685

seq1  CACCCCAGAAAGAGTCAAGGTTCCCAGCTTCCTTCCACCCCATGTCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAAAGAGTCAAGGTTCCCAGCTTCCTTCCACCCCATGTCTGGC  735

seq1  ACTATCTGCTGACCTCGCAATGTTCCCACAGGCACAGGAAATGGTCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGCTGACCTCGCAATGTTCCCACAGGCACAGGAAATGGTCAGGG  785

seq1  GTGTCAGGGATGACGTTCCGGCTCTGAAAGTCCAGGATGCAGGGGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGGATGACGTTCCGGCTCTGAAAGTCCAGGATGCAGGGGCTGAG  835

seq1  GTCAGCCTGGCTTTGTAAGGCTTGCAGCCCCCACTGTTTTAGCTTGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTGGCTTTGTAAGGCTTGCAGCCCCCACTGTTTTAGCTTGGTGT  885

seq1  GGTAGCAGTGGAAGTAGACATGGCGGATGAGGTCGGCAGAACTGTCCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAGTGGAAGTAGACATGGCGGATGAGGTCGGCAGAACTGTCCAGA  935

seq1  GAGCAAAAGCCACATTCCTGCCACAAGCAGGAGAATTC  988
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGCCACATTCCTGCCACAAGCAGGAGAATTC  973