BAC Information

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BAC

Clone NameB6Ng01-152N09
Chromosome9 (Build37)
Map Location 59,704,043 - 59,816,784
singlet/doubletdoublet
Overlap geneMyo9a, Nr2e3, EG665389
Upstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N09.bB6Ng01-152N09.g
ACCDH948311DH948312
length1,1061,071
definitionDH948311|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N09, 5' end.DH948312|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,704,043 - 59,705,155)(59,815,716 - 59,816,784)
sequence
gaattctcctttggtatgggaacctattcatggcaggcctttataacctc
tcagccagtgttctaaccattgagctgcatttgctccttttctgaactct
taataaaaaaagttcatttttgtttatgagaaggaaaaatgaatagaaaa
aatttaatttctaaaatgaaagatgttttgttgaaatgtatatttttaac
tattaatgaaatttaggcacatcttaaaaatcttaaaatggtagaaataa
atcttggtaggtgttggaaagtagaatcctaactacatataagaaatcga
aatttcgggttcaaaagtacagtcccacatcactaatcttcaggtacaac
tctgcttactcccaaggtgcaatgctggtactccctccatgtcttgtctt
ctcttacttttttctcagtaatatctgcttgattaagtcagataaggttt
tgtgtagagagcccacattctccaaaggaggggttttggtgtcctgagaa
ggctcttttatcactcatttataatgtagatttttaatttttcttcttct
aatgaatgtttgtctttataggagaaacaaaaatttccggtcaaaacctg
ttcttccaaaggtgagtactatggaaaaacttcttttttttttctttctt
tttttttttttggtttttcgagacagggtttctctgtgtagccctggctg
tcctggaactcactctgtagaccaggctggcctcgaactcagaaatacgc
ctgcctctgcctcccaagtgccgggattaaaggtgtgtaccaccacaccc
ggcttggaaaaactttttttatttgcttgttgagtaagtatttttttaat
atttgtgtcaccaatgtttataaatcaaggataagaaaaaccttatttac
ttccaaaatagagactatatgtactttgttgactacatttattcattatt
tttaaagatttctttattattatatctaagtacactgtagctgtcttcgg
acacccagaagaagatcatcagaatctctaagatggtgtgatccaccatg
tggttgctgggaatgaactcagaaccttgggagaggagtcagactcttaa
cagcta
aagttcaaagtaaatcaaagagtgggaggaagcattagaatataaaggac
ccctggactcgcaagttagctcagtcagcaaagcactgaagaactgagtt
gagtctcagaacccacatgcaaaaagccgggcgtggtggtactcagttgt
aatcccagcactagggaggcagagactgagaggatcgctggggctcacca
gctggccagccccacctacttggcaagttccaggccagtgagagatggtg
tctcaaaacatggtggatagcacctgaagagcaacaggtgtcctctgacc
tccacatgaacacacacacacacacacacacacacacacacacacacacg
tgtgtaagccactccacaagccaccaaggccacagagaaagcacgggcga
gggtcaagctggtgtctgtaggaagactactgctcacaggtaacatttag
atggggtttcccaatcctgataaaagaggacagcctgtcggagacagtgt
gaggaacttgtgaggtgggatatctgcggaagagacaccctgagagccct
ctcaggagtcagagggaggaagttgagtgaaacaggttgttcctatagaa
tggcaagctttctgcaagcaccttctacggggcagggatgctggagatga
taagcagctgaggcaggatggcactgtgtcaggatgtggggagaggctcc
ccaaagtggaacagctctgagtggctcattcatatccttcctaactgcta
ctaccttgctgccatttgaaacccatcagtgcctcttcctgtaagttgtg
tgtgccgtcatatggcagcccactggcaacccaggcagagccttccccct
gtgtcttgcttcacagaggacaaacaaggcatgggggcagctaactgcct
gcctggggtcacaacgctccaccgaggcagccttgactagcctgggctat
ttgtcttccaatccttttgtaggacaggcttgccttctgagggacttgtt
tgccgacaagagcatggctttcttaccccacacggtccttttattcctct
gatcgttgttctgttgggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59704043_59705155
seq2: B6Ng01-152N09.b_46_1151

seq1  GAATTCTCCTTTGGTATGGGAACCTATTCATGGCAGGCCTTTATAACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTGGTATGGGAACCTATTCATGGCAGGCCTTTATAACCTC  50

seq1  TCAGCCAGTGTTCTAACCATTGAGCTGCATTTGCTCCTTTTCTGAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGTGTTCTAACCATTGAGCTGCATTTGCTCCTTTTCTGAACTCT  100

seq1  TAATAAAAAAAGTTCATTTTTGTTTATGAGAAGGAAAAATGAATAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAAAGTTCATTTTTGTTTATGAGAAGGAAAAATGAATAGAAAA  150

seq1  AATTTAATTTCTAAAATGAAAGATGTTTTGTTGAAATGTATATTTTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTTCTAAAATGAAAGATGTTTTGTTGAAATGTATATTTTTAAC  200

seq1  TATTAATGAAATTTAGGCACATCTTAAAAATCTTAAAATGGTAGAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGAAATTTAGGCACATCTTAAAAATCTTAAAATGGTAGAAATAA  250

seq1  ATCTTGGTAGGTGTTGGAAAGTAGAATCCTAACTACATATAAGAAATCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTAGGTGTTGGAAAGTAGAATCCTAACTACATATAAGAAATCGA  300

seq1  AATTTCGGGTTCAAAAGTACAGTCCCACATCACTAATCTTCAGGTACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCGGGTTCAAAAGTACAGTCCCACATCACTAATCTTCAGGTACAAC  350

seq1  TCTGCTTACTCCCAAGGTGCAATGCTGGTACTCCCTCCATGTCTTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTACTCCCAAGGTGCAATGCTGGTACTCCCTCCATGTCTTGTCTT  400

seq1  CTCTTACTTTTTTCTCAGTAATATCTGCTTGATTAAGTCAGATAAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTTTTTCTCAGTAATATCTGCTTGATTAAGTCAGATAAGGTTT  450

seq1  TGTGTAGAGAGCCCACATTCTCCAAAGGAGGGGTTTTGGTGTCCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAGAGCCCACATTCTCCAAAGGAGGGGTTTTGGTGTCCTGAGAA  500

seq1  GGCTCTTTTATCACTCATTTATAATGTAGATTTTTAATTTTTCTTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTTATCACTCATTTATAATGTAGATTTTTAATTTTTCTTCTTCT  550

seq1  AATGAATGTTTGTCTTTATAGGAGAAACAAAAATTTCCGGTCAAAACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTTTGTCTTTATAGGAGAAACAAAAATTTCCGGTCAAAACCTG  600

seq1  TTCTTCCAAAGGTGAGTACTATGGAAAAACTTCTTTTTTTTTTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAAGGTGAGTACTATGGAAAAACTTCTTTTTTTTTTCTTTCTT  650

seq1  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  700

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATACGC  750

seq1  CTGCCTCTGCCTCCCAAGTGCCGGGATTAAAGGTGTGTACCACCACACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCCGGGATTAAAGGTGTGTACCACCACACCC  800

seq1  GGCTTGGAAAAACTTTTTTTATTTGCTTGTTGAGTAAGTATTTTTTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAAAAACTTTTTTTATTTGCTTGTTGAGTAAGTATTTTTTTAAT  850

seq1  ATTTGTGTCACCAATGTTTATAAATCAAGGATAAGAAAAACCTTATTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTCACCAATGTTTATAAATCAAGGATAAGAAAAACCTTATTTAC  900

seq1  TTCCAAAATAGAGACTATATGTACTTTGTTGACTACATTTTATTCATTTA  950
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TTCCAAAATAGAGACTATATGTACTTTGTTGACTACA-TTTATTCA-TTA  948

seq1  TTTTTAAAAGATTTCTTTATTATTATATCTAAGTACACTGTAGCTGTCTT  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTT-AAAGATTTCTTTATTATTATATCTAAGTACACTGTAGCTGTCTT  997

seq1  CAGACACCCAGAAG-AGATCATCAG-ATCTCTTAAGGATGGTTGTGAGCC  1048
      | |||||||||||| |||||||||| ||||||  | ||||| ||||| ||
seq2  CGGACACCCAGAAGAAGATCATCAGAATCTCT--AAGATGG-TGTGATCC  1044

seq1  ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGGAGAGCAGTCAG  1098
      ||||||||||||||||||  ||||||||| ||| ||||||||| ||||||
seq2  ACCATGTGGTTGCTGGGA-ATGAACTCAGAACC-TTGGGAGAGGAGTCAG  1092

seq1  TACTCTTAACTGCTA  1113
       ||||||||| ||||
seq2  -ACTCTTAACAGCTA  1106

seq1: chr9_59815716_59816784
seq2: B6Ng01-152N09.g_79_1149 (reverse)

seq1  GATCCCAACAGAACAACGATTCAGAGGA--TAAAGGACCGTGTGGGGT-A  47
      ||||||||||||||||||| ||||||||   ||||||||||||||||| |
seq2  GATCCCAACAGAACAACGA-TCAGAGGAATAAAAGGACCGTGTGGGGTAA  49

seq1  GAAAGCCATTGCTCTTTGTCGGCAAAC-AGTCCCTCAGGAAGGC-AGCCT  95
      |||||||| ||||| |||||||||||| ||||||||| |||||| |||||
seq2  GAAAGCCA-TGCTC-TTGTCGGCAAACAAGTCCCTCA-GAAGGCAAGCCT  96

seq1  GTTCTTACAAAAGGGATTGG-AGACAAATAGCCCAGGCTAGTCCAGGCTG  144
      | || ||||||| ||||||| |||||||||||||||||||||| ||||||
seq2  G-TCCTACAAAA-GGATTGGAAGACAAATAGCCCAGGCTAGTCAAGGCTG  144

seq1  CCTCGGTGGAGCGTTGTGACCCCAGGCAGGCAGTTAGCTGCCCCCATGCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGGAGCGTTGTGACCCCAGGCAGGCAGTTAGCTGCCCCCATGCC  194

seq1  -TGTTTGTCCCTCTGTGAAGC-AGGCACAGGGGGATGGCTCTGCCTGGGT  242
       ||||||| |||||||||||| || |||||||||| ||||||||||||||
seq2  TTGTTTGT-CCTCTGTGAAGCAAGACACAGGGGGAAGGCTCTGCCTGGGT  243

seq1  TGCCAGT-GGCTGCCATATGACGGCACACACAACTTACAGGAAGAGGCAC  291
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGGCTGCCATATGACGGCACACACAACTTACAGGAAGAGGCAC  293

seq1  TGATGGGTTTCAAATGGCAGCAAGGTAGTAGCAGTTAGGAAGGATATGAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTTTCAAATGGCAGCAAGGTAGTAGCAGTTAGGAAGGATATGAA  343

seq1  TGAGCCACTCAGAGCTGTTCCACTTTGGGGAGCCTCTCCCCACATCCTGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACTCAGAGCTGTTCCACTTTGGGGAGCCTCTCCCCACATCCTGA  393

seq1  CACAGTGCCATCCTGCCTCAGCTGCTTATCATCTCCAGCATCCCTGCCCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCCATCCTGCCTCAGCTGCTTATCATCTCCAGCATCCCTGCCCC  443

seq1  GTAGAAGGTGCTTGCAGAAAGCTTGCCATTCTATAGGAACAACCTGTTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTGCTTGCAGAAAGCTTGCCATTCTATAGGAACAACCTGTTTC  493

seq1  ACTCAACTTCCTCCCTCTGACTCCTGAGAGGGCTCTCAGGGTGTCTCTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTTCCTCCCTCTGACTCCTGAGAGGGCTCTCAGGGTGTCTCTTC  543

seq1  CGCAGATATCCCACCTCACAAGTTCCTCACACTGTCTCCGACAGGCTGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATATCCCACCTCACAAGTTCCTCACACTGTCTCCGACAGGCTGTC  593

seq1  CTCTTTTATCAGGATTGGGAAACCCCATCTAAATGTTACCTGTGAGCAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATCAGGATTGGGAAACCCCATCTAAATGTTACCTGTGAGCAGT  643

seq1  AGTCTTCCTACAGACACCAGCTTGACCCTCGCCCGTGCTTTCTCTGTGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTACAGACACCAGCTTGACCCTCGCCCGTGCTTTCTCTGTGGC  693

seq1  CTTGGTGGCTTGTGGAGTGGCTTACACACGTGTGTGTGTGTGTGTGTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGCTTGTGGAGTGGCTTACACACGTGTGTGTGTGTGTGTGTGTG  743

seq1  TGTGTGTGTGTGTGTGTGTTCATGTGGAGGTCAGAGGACACCTGTTGCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTCATGTGGAGGTCAGAGGACACCTGTTGCTC  793

seq1  TTCAGGTGCTATCCACCATGTTTTGAGACACCATCTCTCACTGGCCTGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGCTATCCACCATGTTTTGAGACACCATCTCTCACTGGCCTGGA  843

seq1  ACTTGCCAAGTAGGTGGGGCTGGCCAGCTGGTGAGCCCCAGCGATCCTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCAAGTAGGTGGGGCTGGCCAGCTGGTGAGCCCCAGCGATCCTCT  893

seq1  CAGTCTCTGCCTCCCTAGTGCTGGGATTACAACTGAGTACCACCACGCCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGCCTCCCTAGTGCTGGGATTACAACTGAGTACCACCACGCCC  943

seq1  GGCTTTTTGCATGTGGGTTCTGAGACTCAACTCAGTTCTTCAGTGCTTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTGCATGTGGGTTCTGAGACTCAACTCAGTTCTTCAGTGCTTTG  993

seq1  CTGACTGAGCTAACTTGCGAGTCCAGGGGTCCTTTATATTCTAATGCTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAGCTAACTTGCGAGTCCAGGGGTCCTTTATATTCTAATGCTTC  1043

seq1  CTCCCACTCTTTGATTTACTTTGAACTT  1069
      ||||||||||||||||||||||||||||
seq2  CTCCCACTCTTTGATTTACTTTGAACTT  1071