BAC Information

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BAC

Clone NameB6Ng01-153C10
Chromosome9 (Build37)
Map Location 43,732,312 - 43,834,508
singlet/doubletdoublet
Overlap geneLOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153C10.bB6Ng01-153C10.g
ACCDH948542DH948543
length1,163300
definitionDH948542|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C10, 5' end.DH948543|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,732,312 - 43,733,477)(43,834,209 - 43,834,508)
sequence
aagaagtagttctgttcagaatgcctgtctctgacatccccacagcccag
acctgagctatcctcaaacctcagcagaaactctgcctttcccatggaat
cttcgatggcctccaacggagttttccttctccctgtggactttctccac
acaggcaacaaatttttgccctgtgtaaacctgactagatctggggctcc
atgaggaagaggccagatcttgcccaccatcatgagagctttgtgatggt
taatctccgtttaaatttagattagatttagaatcacctcgttgtgcccg
tgggggtgtttccaaaaagacttaactaaagaggggtgatccaccccgaa
tgtggacaacaccaatccgcttgggttccagacagaataaaaaggagaaa
gtcagagctggagacatggctcagcattgctgcccttgcagaagacccgg
gcgattgtgggaggacggcgaatgaagcagggttgatgatagggtggaag
aggatcaatggctcccatcagaggtcacagaggggctcgggaaacacttg
tcaacagagatctccagaaagcacgggagacaccagctgacagaggtctc
cagagaacaggtcactaccacgcgaagttcagcttgcaattggggaccaa
aatagaaaagaagtattctcagaatactgagaaatggagaaaaagaatgt
agtcacccagggaagggtcggggtggtggtgggcatcactggccgtgaga
actattggagcgcccccgtgtggttgtgctagcagcagcagggacagaat
aatttatttaacgagttttttttttttttttccatttcagatatctgttt
tcgttttataaatcgtgttttcttaatattcacttatctcctcatgctcg
tgctaccgtctgcattttgagcatgtggagtgtatttacaatcacggctt
tagtatcgggcgctgcccaacgctgtccagcggctctcttttgttctttt
tccgtttggcgaattttcttgtggaaagaagaaataacttctgcttcttt
cacaaagccgataacttcattaaagagacaataggtggaaattttatttg
ctgagcgcctgaatggggtcttattcttcagaagcaggtcgcttcttttt
ctgcatttttttt
actcttcagcccacgttggcctgaaacttgtgggaactcctgctgcctca
gcttcccaagtgttagaattgcatgcatgagctaccatgcctataccacc
ttctattttgtcatcctacaaagtggtgagctcgttatggcacttttcct
accagatgctagatgcctttataacaacatgttctatgtagctgctcttt
ggtactttgtggtttcttgtttttcttatcttttatctctccagttttcc
cttctatcattagataggaaagaaagaagggtagacgaaagagagagaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43732312_43733477
seq2: B6Ng01-153C10.b_55_1217

seq1  AAGAAGTAGTTCTGTTCAGAATGCCTGTCTCTGACATCCCCACAGCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAGTTCTGTTCAGAATGCCTGTCTCTGACATCCCCACAGCCCAG  50

seq1  ACCTGAGCTATCCTCAAACCTCAGCAGAAACTCTGCCTTTCCCATGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCTATCCTCAAACCTCAGCAGAAACTCTGCCTTTCCCATGGAAT  100

seq1  CTTCGATGGCCTCCAACGGAGTTTTCCTTCTCCCTGTGGACTTTCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGATGGCCTCCAACGGAGTTTTCCTTCTCCCTGTGGACTTTCTCCAC  150

seq1  ACAGGCAACAAATTTTTGCCCTGTGTAAACCTGACTAGATCTGGGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAACAAATTTTTGCCCTGTGTAAACCTGACTAGATCTGGGGCTCC  200

seq1  ATGAGGAAGAGGCCAGATCTTGCCCACCATCATGAGAGCTTTGTGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGAGGCCAGATCTTGCCCACCATCATGAGAGCTTTGTGATGGT  250

seq1  TAATCTCCGTTTAAATTTAGATTAGATTTAGAATCACCTCGTTGTGCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCCGTTTAAATTTAGATTAGATTTAGAATCACCTCGTTGTGCCCG  300

seq1  TGGGGGTGTTTCCAAAAAGACTTAACTAAAGAGGGGTGATCCACCCCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGTTTCCAAAAAGACTTAACTAAAGAGGGGTGATCCACCCCGAA  350

seq1  TGTGGACAACACCAATCCGCTTGGGTTCCAGACAGAATAAAAAGGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAACACCAATCCGCTTGGGTTCCAGACAGAATAAAAAGGAGAAA  400

seq1  GTCAGAGCTGGAGACATGGCTCAGCATTGCTGCCCTTGCAGAAGACCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCTGGAGACATGGCTCAGCATTGCTGCCCTTGCAGAAGACCCGG  450

seq1  GCGATTGTGGGAGGACGGCGAATGAAGCAGGGTTGATGATAGGGTGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTGTGGGAGGACGGCGAATGAAGCAGGGTTGATGATAGGGTGGAAG  500

seq1  AGGATCAATGGCTCCCATCAGAGGTCACAGAGGGGCTCGGGAAACACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAATGGCTCCCATCAGAGGTCACAGAGGGGCTCGGGAAACACTTG  550

seq1  TCAACAGAGATCTCCAGAAAGCACGGGAGACACCAGCTGACAGAGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAGATCTCCAGAAAGCACGGGAGACACCAGCTGACAGAGGTCTC  600

seq1  CAGAGAACAGGTCACTACCACGCGAAGTTCAGCTTGCAATTGGGGACC-A  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAGAACAGGTCACTACCACGCGAAGTTCAGCTTGCAATTGGGGACCAA  650

seq1  AATAGAAAAGAAGTATTCTCAGAATACTGAGAAATGGAGAAAAAGAATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGAAGTATTCTCAGAATACTGAGAAATGGAGAAAAAGAATGT  700

seq1  AGTCACCCAGGGAAGGGTCGGGGTGGTGGTGGGCATCACTGGCCGTGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCAGGGAAGGGTCGGGGTGGTGGTGGGCATCACTGGCCGTGAGA  750

seq1  ACTATTGGAGCGCCCCCGTGTGGTTGTGCTAGCAGCAGCAGGGACAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGAGCGCCCCCGTGTGGTTGTGCTAGCAGCAGCAGGGACAGAAT  800

seq1  AATTTATTTAACGAG-TTTTTTTTTTTTTTTCCATTTCAGATATCTGTTT  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTTATTTAACGAGTTTTTTTTTTTTTTTTCCATTTCAGATATCTGTTT  850

seq1  TCGTTTTTATAAATCGTGTTTTTCTTAATATTCCACTTATCTCCTCATGC  898
      ||| |||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TCG-TTTTATAAATCGTG-TTTTCTTAATATT-CACTTATCTCCTCATGC  897

seq1  TCGTGCTACCGTCTGCATTTTGAGCATGTGGAGTGTATTTACAATCACGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTACCGTCTGCATTTTGAGCATGTGGAGTGTATTTACAATCACGG  947

seq1  CTTCAGTATCGGGCGCCTGCCAACGCTGTCCAGCGTCTCTCTTTTGTTCT  998
      ||| ||||||||||||   |||||||||||||||| ||||||||||||||
seq2  CTTTAGTATCGGGCGCTGCCCAACGCTGTCCAGCGGCTCTCTTTTGTTCT  997

seq1  TTTTCTGTTGGCAGATTTTTCTTGTGGCAATGAGTAATACTTTTCTGCTT  1048
      ||||| ||| |  || ||||||||||| ||  || ||||   ||||||||
seq2  TTTTCCGTTTGGCGAATTTTCTTGTGGAAAGAAGAAATA-ACTTCTGCTT  1046

seq1  CTTT-ACATAGCTATTAACTTTCATTAGA-TGAC-ATATGTTGAAATTTT  1095
      |||| ||| |||   |||| ||||||| |  ||| ||| || ||||||||
seq2  CTTTCACAAAGCCGATAAC-TTCATTAAAGAGACAATAGGTGGAAATTTT  1095

seq1  TATTTTGTCAAGCTCTAGATTGTGCTATATTCCTTTAAAGAGTGATGCCT  1145
         ||||   ||| |  || || | | |  | ||| | |    | |  ||
seq2  --ATTTGCTGAGCGCCTGAATGGGGTCTTATTCTTCAGAAGCAGGTCGCT  1143

seq1  TTTTTTATTTGCATTTTTTTT  1166
      | |||| | ||||||||||||
seq2  TCTTTT-TCTGCATTTTTTTT  1163

seq1: chr9_43834209_43834508
seq2: B6Ng01-153C10.g_75_374 (reverse)

seq1  TCTCTCTCTCTTTCGTCTACCCTTCTTTCTTTCCTATCTAATGATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTCGTCTACCCTTCTTTCTTTCCTATCTAATGATAGAAG  50

seq1  GGAAAACTGGAGAGATAAAAGATAAGAAAAACAAGAAACCACAAAGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGGAGAGATAAAAGATAAGAAAAACAAGAAACCACAAAGTACC  100

seq1  AAAGAGCAGCTACATAGAACATGTTGTTATAAAGGCATCTAGCATCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGCTACATAGAACATGTTGTTATAAAGGCATCTAGCATCTGGT  150

seq1  AGGAAAAGTGCCATAACGAGCTCACCACTTTGTAGGATGACAAAATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTGCCATAACGAGCTCACCACTTTGTAGGATGACAAAATAGAA  200

seq1  GGTGGTATAGGCATGGTAGCTCATGCATGCAATTCTAACACTTGGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATAGGCATGGTAGCTCATGCATGCAATTCTAACACTTGGGAAGC  250

seq1  TGAGGCAGCAGGAGTTCCCACAAGTTTCAGGCCAACGTGGGCTGAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGCAGGAGTTCCCACAAGTTTCAGGCCAACGTGGGCTGAAGAGT  300