BAC Information

Click to search

BAC

Clone NameB6Ng01-153C15
Chromosome9 (Build37)
Map Location 69,589,401 - 69,753,405
singlet/doubletdoublet
Overlap geneFoxb1
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
Downstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153C15.bB6Ng01-153C15.g
ACCDH948552DH948553
length1,0551,065
definitionDH948552|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C15, 5' end.DH948553|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,752,746 - 69,753,405)(69,589,401 - 69,590,450)
sequence
gaattctcagaagttggtcctgatgtctcaggatttcctgaaatagtcta
cagttgccacggttaccttcagggaggagagaagggtggctccagttgag
aaactcgtcatttgaatagttactctatatacacctgtgtgctcaacagt
cctgtgctctgtagcataacaaatttatcccaaagctttgtggctgtcag
acaattggcagtactttactccacagttctgactgtggagtaaccaggtc
ttctgccttaccccctttcaccagaatatactcaaggcattggctgaggc
catgactatttcaaggctcaaccagtagtatgaagatctgcagggctagc
catcagaaagggtgggctagatttttcaggtgcaccggtggtgagctgca
gttcatgggcagaattgcccgtcttcagggaagcctcagcggtatctaac
atcttccagctgcttgaagcttatccaccttatcaaactgcatcgtctct
ggtacgaatgactagggacttcagtcacatttgataaagacctgcacagg
aacacctcatatcagtatttaaccaagacactggagactatatagccaaa
tcatgtggatatatcaaaaacttcagtcaatatatatatcttttcatatt
tattcagtaagtcattagacccaggtcagactcaaggggagggtatgaac
cagtgtaagagaccaagaagcagagatttttggaaactatttacaaggct
tgctaccaaagtcacttaaaataaaaactacttattttatttttttaaag
tcatgtgcttatgtgaacatctgtgtatggttgtgtgcaagtgtgagcag
ttcctctggaggccagaagagggtgtcagatctcctagagctggggtttc
atatggtcatgagcaggcaacatagatgctgagaaccaatgtggggtctt
ctgcaagagcctcaaattctcttaaccactggagtcatctctgcagccct
agaatcacttttttatttttactttcaaaaaagttttgcaagggcaaatt
ccttt
gaattcagggttgtatcgtgagcacgcagggacctttaccaatcccaggc
tcccagccagtggaacatcgagcaagggagctggcgcagccacttacagc
caggcacagaatctcacaagctcacagatcaagctccatcagtacaggat
attgctcacattctgtgtaaactcaaagcccagctaagggtatgtgggca
gcctccaggtggaaatgtgtccgcccaatggctccaccaatgaggagaat
tccaggactgccccgatccaggctctccgtctctgtgttgcatctttgaa
cagaatgtttcaatatttccagaagctgtgttgagagaagccagattcaa
gctccagagggctgaaaatagaagataaatttgaaagtataaatggttac
gcacagacaatcgaatactaagcagcaaaagggaaggatgggtgtcccat
tttcatttctgttgctgtgataaggtaacatgacaaaaagcagcttagag
gagaaatgttttattttatctcccaactcaggattaccttctcttcttag
ggagaaaccacagtgcaggagttaagacagcgggacagaccacatccaca
tcaagagcggagagaatggatgcgctcagccagccacgtccactctccat
tttgtcagtggttctaaagtttttcgttgtcaaaaactgctaagaaatgt
ttagtctcatatctagctttactgtgagttgtgtaacgtgagagtccttg
cgggattagaaaacagaaattaatgggagaaaccctctgcagatgtagga
aataagggcttgcccttaccttaatagccaaattagcttttaacaattaa
acagggacctttgacaaatgaccttgctaattgctcctccttggtgtgca
cattaatataagcagaatgctcgaaatctgcagggactttagttctctgc
tgtcaccatgctttaccgttgtagatttgaagctaagttgtaaactctgc
cctcaggagactagaatctgaacagaagacagaaggtctgggcagttgtt
ctggggatctggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69752746_69753405
seq2: B6Ng01-153C15.b_45_704 (reverse)

seq1  TTACTGAATAAATATGAAAAGATATATATATTGACTGAAGTTTTTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAATAAATATGAAAAGATATATATATTGACTGAAGTTTTTGATAT  50

seq1  ATCCACATGATTTGGCTATATAGTCTCCAGTGTCTTGGTTAAATACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATGATTTGGCTATATAGTCTCCAGTGTCTTGGTTAAATACTGAT  100

seq1  ATGAGGTGTTCCTGTGCAGGTCTTTATCAAATGTGACTGAAGTCCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGTTCCTGTGCAGGTCTTTATCAAATGTGACTGAAGTCCCTAGT  150

seq1  CATTCGTACCAGAGACGATGCAGTTTGATAAGGTGGATAAGCTTCAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTACCAGAGACGATGCAGTTTGATAAGGTGGATAAGCTTCAAGCA  200

seq1  GCTGGAAGATGTTAGATACCGCTGAGGCTTCCCTGAAGACGGGCAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGATGTTAGATACCGCTGAGGCTTCCCTGAAGACGGGCAATTCT  250

seq1  GCCCATGAACTGCAGCTCACCACCGGTGCACCTGAAAAATCTAGCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAACTGCAGCTCACCACCGGTGCACCTGAAAAATCTAGCCCACC  300

seq1  CTTTCTGATGGCTAGCCCTGCAGATCTTCATACTACTGGTTGAGCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATGGCTAGCCCTGCAGATCTTCATACTACTGGTTGAGCCTTGA  350

seq1  AATAGTCATGGCCTCAGCCAATGCCTTGAGTATATTCTGGTGAAAGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATGGCCTCAGCCAATGCCTTGAGTATATTCTGGTGAAAGGGGG  400

seq1  TAAGGCAGAAGACCTGGTTACTCCACAGTCAGAACTGTGGAGTAAAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGAAGACCTGGTTACTCCACAGTCAGAACTGTGGAGTAAAGTAC  450

seq1  TGCCAATTGTCTGACAGCCACAAAGCTTTGGGATAAATTTGTTATGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTGTCTGACAGCCACAAAGCTTTGGGATAAATTTGTTATGCTAC  500

seq1  AGAGCACAGGACTGTTGAGCACACAGGTGTATATAGAGTAACTATTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGGACTGTTGAGCACACAGGTGTATATAGAGTAACTATTCAAA  550

seq1  TGACGAGTTTCTCAACTGGAGCCACCCTTCTCTCCTCCCTGAAGGTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAGTTTCTCAACTGGAGCCACCCTTCTCTCCTCCCTGAAGGTAACC  600

seq1  GTGGCAACTGTAGACTATTTCAGGAAATCCTGAGACATCAGGACCAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAACTGTAGACTATTTCAGGAAATCCTGAGACATCAGGACCAACTT  650

seq1  CTGAGAATTC  660
      ||||||||||
seq2  CTGAGAATTC  660

seq1: chr9_69589401_69590450
seq2: B6Ng01-153C15.g_69_1133

seq1  GAATTCAGGGTTGTATCGTGAGCACGCAGGGACCTTTACCAATCCCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTTGTATCGTGAGCACGCAGGGACCTTTACCAATCCCAGGC  50

seq1  TCCCAGCCAGTGGAACATCGAGCAAGGGAGCTGGCGCAGCCACTTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCAGTGGAACATCGAGCAAGGGAGCTGGCGCAGCCACTTACAGC  100

seq1  CAGGCACAGAATCTCACAAGCTCACAGATCAAGCTCCATCAGTACAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAGAATCTCACAAGCTCACAGATCAAGCTCCATCAGTACAGGAT  150

seq1  ATTGCTCACATTCTGTGTAAACTCAAAGCCCAGCTAAGGGTATGTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCACATTCTGTGTAAACTCAAAGCCCAGCTAAGGGTATGTGGGCA  200

seq1  GCCTCCAGGTGGAAATGTGTCCGCCCAATGGCTCCACCAATGAGGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGGTGGAAATGTGTCCGCCCAATGGCTCCACCAATGAGGAGAAT  250

seq1  TCCAGGACTGCCCCGATCCAGGCTCTCCGTCTCTGTGTTGCATCTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACTGCCCCGATCCAGGCTCTCCGTCTCTGTGTTGCATCTTTGAA  300

seq1  CAGAATGTTTCAATATTTCCAGAAGCTGTGTTGAGAGAAGCCAGATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTTCAATATTTCCAGAAGCTGTGTTGAGAGAAGCCAGATTCAA  350

seq1  GCTCCAGAGGGCTGAAAATAGAAGATAAATTTGAAAGTATAAATGGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGGGCTGAAAATAGAAGATAAATTTGAAAGTATAAATGGTTAC  400

seq1  GCACAGACAATCGAATACTAAGCAGCAAAAGGGAAGGATGGGTGTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACAATCGAATACTAAGCAGCAAAAGGGAAGGATGGGTGTCCCAT  450

seq1  TTTCATTTCTGTTGCTGTGATAAGGTAACATGACAAAAAGCAGCTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTGTTGCTGTGATAAGGTAACATGACAAAAAGCAGCTTAGAG  500

seq1  GAGAAATGTTTTATTTTATCTCCCAACTCAGGATTACCTTCTCTTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTTTTATTTTATCTCCCAACTCAGGATTACCTTCTCTTCTTAG  550

seq1  GGAGAAACCACAGTGCAGGAGTTAAGACAGCGGGACAGACCACATCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCACAGTGCAGGAGTTAAGACAGCGGGACAGACCACATCCACA  600

seq1  TCAAGAGCGGAGAGAATGGATGCGCTCAGCCAGCCACGTCCACTCTCCA-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGAGCGGAGAGAATGGATGCGCTCAGCCAGCCACGTCCACTCTCCAT  650

seq1  TTTGGCAGTGGTTCTAAAGTTTTTCGTTGTCAAAAACTGCTAAGAAATG-  698
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGTCAGTGGTTCTAAAGTTTTTCGTTGTCAAAAACTGCTAAGAAATGT  700

seq1  TTAGTCTCATATCTAGC-TTACTGTGAGTTGTGTAACGTGAGAGTCCTTG  747
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGTCTCATATCTAGCTTTACTGTGAGTTGTGTAACGTGAGAGTCCTTG  750

seq1  C-GGATTAGAAAACAGAACTAAA--GGAGAAACCCTCTGCAGATGTAGGA  794
      | |||||||||||||||| | ||  |||||||||||||||||||||||||
seq2  CGGGATTAGAAAACAGAAATTAATGGGAGAAACCCTCTGCAGATGTAGGA  800

seq1  AATAA-GGCTTG-CCTTACCTTAATAGCC-AATTAGC-TTTAACAATTAA  840
      ||||| |||||| |||||||||||||||| ||||||| ||||||||||||
seq2  AATAAGGGCTTGCCCTTACCTTAATAGCCAAATTAGCTTTTAACAATTAA  850

seq1  ACAGGGACC-TTGACAAATGACCTTGCTAATTGCTCCTCCTTGGTGTGCA  889
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCTTTGACAAATGACCTTGCTAATTGCTCCTCCTTGGTGTGCA  900

seq1  CATTAATATAAGCAGAATGCTCGAAATCTGCAGGGACTTTAGTTCTCTGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATATAAGCAGAATGCTCGAAATCTGCAGGGACTTTAGTTCTCTGC  950

seq1  TGTCACCATGCTTTACCGTTGTAGATCTGAAGCTAAGTTGTAAACTCTGC  989
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCACCATGCTTTACCGTTGTAGATTTGAAGCTAAGTTGTAAACTCTGC  1000

seq1  CCTCAGGAGACTAGAATCTGAACAGA--GCAG-AGGTCTGGGCAGTTGTT  1036
      ||||||||||||||||||||||||||   ||| |||||||||||||||||
seq2  CCTCAGGAGACTAGAATCTGAACAGAAGACAGAAGGTCTGGGCAGTTGTT  1050

seq1  CT-GGGATCTGGACA  1050
      || ||||||||||||
seq2  CTGGGGATCTGGACA  1065