BAC Information

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BAC

Clone NameB6Ng01-153F15
Chromosome9 (Build37)
Map Location 21,540,027 - 21,642,775
singlet/doubletdoublet
Overlap geneLdlr, Spc24, Ankrd25, Dock6, EG624219
Upstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
Downstream geneRab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153F15.bB6Ng01-153F15.g
ACCDH948688DH948689
length1,0331,006
definitionDH948688|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F15, 5' end.DH948689|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,540,027 - 21,541,056)(21,641,761 - 21,642,775)
sequence
gaattcagaaatccatcacccaagatcagctgtggtttttttttgtttgt
ttggtttttttgtttttttttgttttttttttttttttgagagttatttg
ccccctttgaacctccttccacttagctggattacaaaatggaattctct
gcttcggtactttgatttgtttatttctgagatgggttctcatgcggtcc
aagagctgggatcatggatgtgcgatgctgtgctcagtttatgctgggga
acaaacccagagcttcatgcgttctaccaagggagccgtaggtactcctg
gtagacgctgctttaggcttgaggtgctagtgacattcatacaattcagc
tccatgaaaagaacattccagaactgacgagagctgtttccttcctacta
ccatgagtgtcctgagatcaaactcacggcatctggcccagcgacacttc
ttccaccccactgacctgcaagttggaaaaaaaatatgcataacataaaa
ggatgtggttgggctggtgagatggctcagtgggtaggagcactgactgc
tcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctcaca
accacccgtaatgagatctgccgccctcttctggcgtgtctgaaagtcag
ctacagtgtacttacatataataataaataaatcttaaaaaaaacaaaaa
acaaaaaacgatatggtctggggctgagccattggtagagtgctcgcctc
acatgaacctgtgtggtgacacacgccctgtaaccccagcgttcggggaa
gtgcaggctggaggtcaaggccagccttgcttacactgaatctgagaaca
gctcttcataaaaaaaaaaaaaaccaaacaccacaataaaacacatttct
ttttttttttctttttttaaatggtaggttttgctgtttgttcttttggg
ctgaactaaggcttcccattgcatggctgagttaccttgttgcttttgcc
tgctcatgccatgcctgggcatggtggtagagg
gaattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcc
tctgcctcccgagtgctgggattaaaggcgtgcaccaccacacccggctc
ctaccttttttctttaacatttactgttactattattatttgttgagaca
ggatctcaccatgtagccctggctgtcctagaacttactctgtagaccag
gctggcctcagactcattacctatgcctcccaagacctgggactaaaggt
gtgcactgccatgcctggcttttattatttttaattatctgtgtgtgggt
acatgtgcctgtgtgtggacctgcacctgtgtgtgagtacgtgcacctat
gtgtgggaacacacatgtgcttgtgtttgggcacatgtgcctgtgtgtgg
gtacactcacatgtgtgttagtacgtgcacctgtgtgtgggtaaacacac
ctgtgtgtgagtacagacacctgtgtagggtacatgcacctgtgtgtggg
tacacacacctgtgtagggtacatgcacctgtgtgtgggtacatatacct
gtgtgtgggtacatgcacctgtgtgtgagtacacacacctgtgtagggtg
catgcacctgtgtgaggtgttgagtagaccagaggctttggatcctcagg
agttggagttgcaggtggttgtgagccacctgataggagagatggaaatc
aaatatgggtccctacaagagcactgtgtgcgtctaactagagccttctt
ctaccactctcagtgtttttttattctcagagtctgtcacagcctggaac
gtgccaaggctggttaaagacccgcctggtcctcctctctgtacctttgc
agtgtgagatgctacgtccctggctggggtctgtaattaaaccccagact
gtgcgtgctgggcagtgaggtccgataatcctctcccagatgccccaagc
ttgcagaaaacaatgtggacactgttcataattgctctgtctcttttatt
gtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21540027_21541056
seq2: B6Ng01-153F15.b_43_1075

seq1  GAATTCAGAAATCCATCACCCAAGATCAGCTGTGGTTTTTTTTTGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCCATCACCCAAGATCAGCTGTGGTTTTTTTTTGTTTGT  50

seq1  TTGGTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTGAGAGTTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTGAGAGTTATTTG  100

seq1  CCCCCTTTGAACCTCCTTCCACTTAGCTGGATTACAAAATGGAATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTGAACCTCCTTCCACTTAGCTGGATTACAAAATGGAATTCTCT  150

seq1  GCTTCGGTACTTTGATTTGTTTATTTCTGAGATGGGTTCTCATGCGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGGTACTTTGATTTGTTTATTTCTGAGATGGGTTCTCATGCGGTCC  200

seq1  AAGAGCTGGGATCATGGATGTGCGATGCTGTGCTCAGTTTATGCTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGGATCATGGATGTGCGATGCTGTGCTCAGTTTATGCTGGGGA  250

seq1  ACAAACCCAGAGCTTCATGCGTTCTACCAAGGGAGCCGTAGGTACTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAGAGCTTCATGCGTTCTACCAAGGGAGCCGTAGGTACTCCTG  300

seq1  GTAGACGCTGCTTTAGGCTTGAGGTGCTAGTGACATTCATACAATTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACGCTGCTTTAGGCTTGAGGTGCTAGTGACATTCATACAATTCAGC  350

seq1  TCCATGAAAAGAACATTCCAGAACTGACGAGAGCTGTTTCCTTCCTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAAAGAACATTCCAGAACTGACGAGAGCTGTTTCCTTCCTACTA  400

seq1  CCATGAGTGTCCTGAGATCAAACTCACGGCATCTGGCCCAGCGACACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTGTCCTGAGATCAAACTCACGGCATCTGGCCCAGCGACACTTC  450

seq1  TTCCACCCCACTGACCTGCAAGTTGGAAAAAAAATATGCATAACATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCCACTGACCTGCAAGTTGGAAAAAAAATATGCATAACATAAAA  500

seq1  GGATGTGGTTGGGCTGGTGAGATGGCTCAGTGGGTAGGAGCACTGACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGTTGGGCTGGTGAGATGGCTCAGTGGGTAGGAGCACTGACTGC  550

seq1  TCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  600

seq1  ACCACCCGTAATGAGATCTGCCGCCCTCTTCTGGCGTGTCTG-AAGTCAG  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCACCCGTAATGAGATCTGCCGCCCTCTTCTGGCGTGTCTGAAAGTCAG  650

seq1  CTACAGTGTACTTACATATAATAATAAATAAATCTTAAAAAAAACAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTACTTACATATAATAATAAATAAATCTTAAAAAAAACAAAAA  700

seq1  ACAAAAAACGATATGGTCTGGGGCTGAGCCATTGGTAGAGTGCTCGCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACGATATGGTCTGGGGCTGAGCCATTGGTAGAGTGCTCGCCTC  750

seq1  ACATGAACCTGTGTGGTGACACACG-CCTGTAACCCCAGCGTTC-GGGAG  797
      ||||||||||||||||||||||||| |||||||||||||||||| |||| 
seq2  ACATGAACCTGTGTGGTGACACACGCCCTGTAACCCCAGCGTTCGGGGAA  800

seq1  GTGCAGGCTGGAGGTCAAGGCCAGCCTTGCTTACACTGAATCTGAGAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCTGGAGGTCAAGGCCAGCCTTGCTTACACTGAATCTGAGAACA  850

seq1  GCTC-TCATAAAAAAAAAAAAAAACAACAACAACAATAAAGCACATTTCT  896
      |||| |||||||||||||||||| |||  || |||||||| |||||||||
seq2  GCTCTTCATAAAAAAAAAAAAAACCAAACACCACAATAAAACACATTTCT  900

seq1  TTTTTTTTTTCTTTTTTTAAATGTTAGGTTTTTGCTGTTTGTTCTTTTGT  946
      ||||||||||||||||||||||| |||| |||||||||||||||||||| 
seq2  TTTTTTTTTTCTTTTTTTAAATGGTAGG-TTTTGCTGTTTGTTCTTTTGG  949

seq1  GCTGAACTCAGGGCTTCCCATTGCTAGGCTGAGTTA-CTTGTTGCTTTTG  995
      |||||||| | |||||||||||||  |||||||||| |||||||||||||
seq2  GCTGAACT-AAGGCTTCCCATTGCATGGCTGAGTTACCTTGTTGCTTTTG  998

seq1  CCTGCTCAATGCCATG-CTGGGCATGGTGGTAGAGG  1030
      ||||||| |||||||| |||||||||||||||||||
seq2  CCTGCTC-ATGCCATGCCTGGGCATGGTGGTAGAGG  1033

seq1: chr9_21641761_21642775
seq2: B6Ng01-153F15.g_72_1077 (reverse)

seq1  CCCCACAATAAAAGAGAACAGAGGCAATCTATGAACAGTGTCCACATCTG  50
      |||||||||||||||| ||||| ||||| ||||||||||||||||||   
seq2  CCCCACAATAAAAGAG-ACAGA-GCAAT-TATGAACAGTGTCCACATTGT  47

seq1  TTTCTGCAAGCATGGGGCATCCTGGGCGGGGGCTTATCGGACCTCACTTG  100
      ||||||||||| |||||||| |||||  | || |||||||||||||| ||
seq2  TTTCTGCAAGCTTGGGGCAT-CTGGG-AGAGGATTATCGGACCTCAC-TG  94

seq1  CCCAGCACGCACAGTCCTGGGTTTCAATTACAGAACCACAGCCACGGACG  150
      ||||||||||||||| ||||| || |||||||| ||| |||||| |||||
seq2  CCCAGCACGCACAGT-CTGGGGTTTAATTACAG-ACCCCAGCCAGGGACG  142

seq1  TAGCATCTCAACACTGCAAAGGTACAGAGAGGAGGACCAGGCGGGTCCTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TAGCATCTC-ACACTGCAAAGGTACAGAGAGGAGGACCAGGCGGGTCTTT  191

seq1  AGCCAGCCTTGGCACGTTCCAGGCTGTGACAGACTCTGAGAAT-AAAAAA  249
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACCAGCCTTGGCACGTTCCAGGCTGTGACAGACTCTGAGAATAAAAAAA  241

seq1  CACTGGGAGTTGGTAGAAGAAGGCTCTAGTTAGACGCACACAGTGCTCTT  299
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAG-TGGTAGAAGAAGGCTCTAGTTAGACGCACACAGTGCTCTT  290

seq1  GTAGGGACCCATATTTGATTTCCATCTCTCCTATCAGGTGGCTCACAACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGACCCATATTTGATTTCCATCTCTCCTATCAGGTGGCTCACAACC  340

seq1  ACCTGCAACTCCAACTCCTGAGGATCCAAAGCCTCTGGTCTACTCAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAACTCCAACTCCTGAGGATCCAAAGCCTCTGGTCTACTCAACAC  390

seq1  CTCACACAGGTGCATGCACCCTACACAGGTGTGTGTACTCACACACAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGGTGCATGCACCCTACACAGGTGTGTGTACTCACACACAGGT  440

seq1  GCATGTACCCACACACAGGTATATGTACCCACACACAGGTGCATGTACCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACCCACACACAGGTATATGTACCCACACACAGGTGCATGTACCC  490

seq1  TACACAGGTGTGTGTACCCACACACAGGTGCATGTACCCTACACAGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGTGTGTGTACCCACACACAGGTGCATGTACCCTACACAGGTGT  540

seq1  CTGTACTCACACACAGGTGTGTTTACCCACACACAGGTGCACGTACTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCACACACAGGTGTGTTTACCCACACACAGGTGCACGTACTAAC  590

seq1  ACACATGTGAGTGTACCCACACACAGGCACATGTGCCCAAACACAAGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGAGTGTACCCACACACAGGCACATGTGCCCAAACACAAGCAC  640

seq1  ATGTGTGTTCCCACACATAGGTGCACGTACTCACACACAGGTGCAGGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTCCCACACATAGGTGCACGTACTCACACACAGGTGCAGGTCC  690

seq1  ACACACAGGCACATGTACCCACACACAGATAATTAAAAATAATAAAAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGCACATGTACCCACACACAGATAATTAAAAATAATAAAAGCC  740

seq1  AGGCATGGCAGTGCACACCTTTAGTCCCAGGTCTTGGGAGGCATAGGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGCAGTGCACACCTTTAGTCCCAGGTCTTGGGAGGCATAGGTAA  790

seq1  TGAGTCTGAGGCCAGCCTGGTCTACAGAGTAAGTTCTAGGACAGCCAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGGCCAGCCTGGTCTACAGAGTAAGTTCTAGGACAGCCAGGG  840

seq1  CTACATGGTGAGATCCTGTCTCAACAAATAATAATAGTAACAGTAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTGAGATCCTGTCTCAACAAATAATAATAGTAACAGTAAATGT  890

seq1  TAAAGAAAAAAGGTAGGAGCCGGGTGTGGTGGTGCACGCCTTTAATCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAAGGTAGGAGCCGGGTGTGGTGGTGCACGCCTTTAATCCCA  940

seq1  GCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG  990

seq1  TCTACAAAGTGAATTC  1015
      ||||||||||||||||
seq2  TCTACAAAGTGAATTC  1006