BAC Information

Click to search

BAC

Clone NameB6Ng01-153L15
Chromosome9 (Build37)
Map Location 77,930,636 - 78,076,904
singlet/doubletdoublet
Overlap geneFbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074
Upstream geneLOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353
Downstream geneGsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153L15.bB6Ng01-153L15.g
ACCDH948955DH948956
length1,109862
definitionDH948955|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L15, 5' end.DH948956|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,930,636 - 77,931,895)(78,076,050 - 78,076,904)
sequence
gaattcccaatcagagactataatctgtagcccttgttaaactgtttttt
ttttttttttaaaaaacgccctatcggggctggagagatggctcagcagt
taagaacactgactgctcttctgaaggtcctgagttcaaatcccagcaac
cacatggtggctcacaaccatctgtaatgaggctaacgccctcttctggt
gcatctgaagacagctacagtgtacttatgtataataataaataaatctt
taaaaaaaaaaaaggcagccaagtgtggtggcacacgcctttaatcccag
cactcgggaggcagaagcaggcagatttctgagttcgaggccagcctggt
ctacaaagtgagttccgggacagccagggctacacagagaaaccctgtct
cgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccctatcatta
caagagaactaatgatttggtatgggatcaatagcaaatgtgtaagtgtg
tgcgggctgaggggatcactaattatctaattatgctaccacagctgtat
tatacactcccgaggagacatcaaccaaagcagaaaaccacagtcaccaa
cagctgcaatctgtacctgctctggagcgctttccttctaaaagacaatt
ctcacttcctacaggggcaagcacaaactgtggcttccttctccttctgg
gtttttactctggactcactgcatcagatcacaaactaaatggagaaggg
aaggcctgggcttgtgaggacacagccgggctttggtagacggagcctcc
acatgagtacttgaaggtcatccacacagtggaaatgtgatgggagacca
tcacccgcgcagtcagggactggcagagcgggattgggaatctgtttaaa
accttccttctcagaacttctggatttgacctgcggtgggggggccaaga
acaccagtcttctttcaagctcgacacctgctaactggcagtcacaggac
caggtggttcctggtcctttctaaacctttctacctctgtactgtttctt
tttggatgctcttaataattactaataaaaactctaccaaacgaattaag
agctttacc
gaattctagagggcttggttccaagttcccatggctggccaggtgtgtgt
acagagagaggccacgatggacatgtgaccaacttcccttgagtgttgga
gatgtgtccctgtgtgcaggtgtacaaaggacagttggatgatttgtcat
gtgctactccaccagactaacaaatgtccaagctctttggtgcaactcct
gaactttcatctgcaataaaaacttgatgtgtccttcaaatgtgttcttt
aaaattacttgggcttcagaaaagtttcacgggactgagagtgcagcttg
gtggtatagcctgctctgccatgctcccaggagcctggggcagagcccta
tcatggaaaagctcgaaggttggagtcagttaatctagacgcatgtgaca
gtttatctctatgtgcctattaatctatctctgtgtacctgttaatctag
aagtgtgtgacagttcatctagaagtgtgtgactgttttctagatgccac
ctctgtgttgtcacctttctctatgtcattctttgtcttccctcatgagt
tggatatgttgaggggtattagatatttttgtgcaaaatatcacatactt
gatgctctttttctgtgtgtgacttccatacactgtcatgttcattacat
agggtgtgagtctctgtagactataggggatatcatcatcttctcttgtc
taccttggtccccttctttgctttttattagtcagacttcctgctccatg
aaacccagcccatttcgccatgcgttatttggttggaaatagttttaaaa
atgaggaacctggtctctggtgggtacttattgcttcggaggcccttctt
tgtcctaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77930636_77931895
seq2: B6Ng01-153L15.b_46_1154

seq1  GAATTCCCAATCAGAGACTATAATCTGTAGCCCTTGTTAAACTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATCAGAGACTATAATCTGTAGCCCTTGTTAAACTGTTTTTT  50

seq1  TTTTTTTTTTAAAAAACGCCCTATCGGGGCTGGAGAGATGGCTCAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAAAAACGCCCTATCGGGGCTGGAGAGATGGCTCAGCAGT  100

seq1  TAAGAACACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAAC  150

seq1  CACATGGTGGCTCACAACCATCTGTAATGAGGCTAACGCCCTCTTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTGTAATGAGGCTAACGCCCTCTTCTGGT  200

seq1  GCATCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTT  250

seq1  TAAAAAAAAAAAAGGCAGCCAAGTGTGGTGGCACACGCCTTTAATCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAGGCAGCCAAGTGTGGTGGCACACGCCTTTAATCCCAG  300

seq1  CACTCGGGAGGCAGAAGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGAGGCAGAAGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGT  350

seq1  CTACAAAGTGAGTTCCGGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCGGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  400

seq1  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTATCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTATCATTA  450

seq1  CAAGAGAACTAATGATTTGGTATGGGATCAATAGCAAATGTGTAAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACTAATGATTTGGTATGGGATCAATAGCAAATGTGTAAGTGTG  500

seq1  TGCGGGCTGAGGGGATCACTAATTATCTAATTATGCTACCACAGCTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGCTGAGGGGATCACTAATTATCTAATTATGCTACCACAGCTGTAT  550

seq1  TATACACTCCCGAGGAGACATCAACCAAAGCAGAAAACCACAGTCACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTCCCGAGGAGACATCAACCAAAGCAGAAAACCACAGTCACCAA  600

seq1  CAGCTGCAATCTGTACCTGCTCTGGAGCGCTTTCCTTCTAAAAGACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAATCTGTACCTGCTCTGGAGCGCTTTCCTTCTAAAAGACAATT  650

seq1  CTCACTTCCTACAGGGGCAAGCACAAACTGTGGCTTCCTTCTCCTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCTACAGGGGCAAGCACAAACTGTGGCTTCCTTCTCCTTCTGG  700

seq1  G-TTTTACTCTGGACTCACTGCATCAGATCACAAACTAAATGGAGAAGGG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACTCTGGACTCACTGCATCAGATCACAAACTAAATGGAGAAGGG  750

seq1  AAGGCCTGGGC-TGTGAGGACACAGCCGGGC-TTGGTAGACGGAGCCTCC  797
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AAGGCCTGGGCTTGTGAGGACACAGCCGGGCTTTGGTAGACGGAGCCTCC  800

seq1  ACATGAGTAC-TGAA-GTCATCCACACAGTGGAAATGTGAT-GGAGACCA  844
      |||||||||| |||| ||||||||||||||||||||||||| ||||||||
seq2  ACATGAGTACTTGAAGGTCATCCACACAGTGGAAATGTGATGGGAGACCA  850

seq1  TCA-CCGCGCAGTCA-GGACT-GCAGAGC-GGATTGGGAGCCTGTTCAAA  890
      ||| ||||||||||| ||||| ||||||| |||||||||  ||||| |||
seq2  TCACCCGCGCAGTCAGGGACTGGCAGAGCGGGATTGGGAATCTGTTTAAA  900

seq1  ACC-TCCCTCTCAGAAC-TCTGGATTTGACCTGCG--TGGGGAGCCCAGA  936
      ||| ||| ||||||||| |||||||||||||||||   |||| ||| |||
seq2  ACCTTCCTTCTCAGAACTTCTGGATTTGACCTGCGGTGGGGGGGCCAAGA  950

seq1  ACACCAGTCTTCCTTCAAGCTCGACACCTGCTAACTGGCAGTCACATGAC  986
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  ACACCAGTCTTCTTTCAAGCTCGACACCTGCTAACTGGCAGTCACAGGAC  1000

seq1  CAGGTGGTTCCT-GTCTCTTCTAAACTCTTTCTTACTTCTGTACTG-TTC  1034
      |||||||||||| |||  |||||||| ||||| ||| ||||||||| |||
seq2  CAGGTGGTTCCTGGTCCTTTCTAAAC-CTTTC-TACCTCTGTACTGTTTC  1048

seq1  TTTTTTGATGCTCTTAATTAATTACTAATTAAAAAACCCTACCAAACAGA  1084
      ||||| ||||||||||| |||||||||||  |||||| ||||||||| ||
seq2  TTTTTGGATGCTCTTAA-TAATTACTAAT--AAAAACTCTACCAAAC-GA  1094

seq1  ATTAAGAGCTTTA-CATAGAGGGCGGTAGCAGGTGGGTGGGCAGGGGAGC  1133
      ||||||||||||| |                                   
seq2  ATTAAGAGCTTTACC-----------------------------------  1109

seq1  ACCCTCATGGAAGCAGGGATTGGGGGGAGGTGGGATAGGGGTTTTCGGAG  1183
                                                        
seq2  --------------------------------------------------  1109

seq1  GGGAAACCAGGAGGGGGATGACAAATGTAAATAAACAAAATAACCAATAA  1233
                                                        
seq2  --------------------------------------------------  1109

seq1  AGAAATGTTTAAATAAAGAGCTTTACC  1260
                                 
seq2  ---------------------------  1109

seq1: chr9_78076050_78076904
seq2: B6Ng01-153L15.g_71_932 (reverse)

seq1  CATATTAGGACCATG-AGGGCCTCAGAAGCAATAAGTACACA-CAGAGAC  48
      | ||||||||| | | |||||||| |||||||||||||| || |||||||
seq2  CTTATTAGGACAAAGAAGGGCCTCCGAAGCAATAAGTACCCACCAGAGAC  50

seq1  CA-GTTCCTCATTTTGAATACTATTTCCAA-CAAATAACGCATGGCGAAA  96
      || |||||||||||| || ||||||||||| |||||||||||||||||||
seq2  CAGGTTCCTCATTTTTAAAACTATTTCCAACCAAATAACGCATGGCGAAA  100

seq1  T-GGCTGGGTTCAGTGGAGCAGGAAGTGCTGACTAATAAAAAGCAAAG-A  144
      | |||||||||   ||||||||||||| |||||||||||||||||||| |
seq2  TGGGCTGGGTTTCATGGAGCAGGAAGT-CTGACTAATAAAAAGCAAAGAA  149

seq1  GGGGACCAAGGTAGACAAGAGAAGATGATGATAT-CCCTATAGTCTACAG  193
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGACCAAGGTAGACAAGAGAAGATGATGATATCCCCTATAGTCTACAG  199

seq1  AGACTCACACCCTATGTAATGAACATGACAGTGTATGGAAGTCACACACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACACCCTATGTAATGAACATGACAGTGTATGGAAGTCACACACA  249

seq1  G-AAAAGAGCATCAAGTATGTGATATTTTGCACAAAAATATCTAATACCC  292
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGCATCAAGTATGTGATATTTTGCACAAAAATATCTAATACCC  299

seq1  CTCAACATATCCAACTCATGAGGGAAGACAAAGAATGACATAGAGAAAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATATCCAACTCATGAGGGAAGACAAAGAATGACATAGAGAAAGG  349

seq1  TGACAACACAGAGGTGGCATCTAGAAAACAGTCACACACTTCTAGATGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACAGAGGTGGCATCTAGAAAACAGTCACACACTTCTAGATGAA  399

seq1  CTGTCACACACTTCTAGATTAACAGGTACACAGAGATAGATTAATAGGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACACTTCTAGATTAACAGGTACACAGAGATAGATTAATAGGCA  449

seq1  CATAGAGATAAACTGTCACATGCGTCTAGATTAACTGACTCCAACCTTCG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGATAAACTGTCACATGCGTCTAGATTAACTGACTCCAACCTTCG  499

seq1  AGCTTTTCCATGATAGGGCTCTGCCCCAGGCTCCTGGGAGCATGGCAGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCATGATAGGGCTCTGCCCCAGGCTCCTGGGAGCATGGCAGAG  549

seq1  CAGGCTATACCACCAAGCTGCACTCTCAGTCCCGTGAAACTTTTCTGAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATACCACCAAGCTGCACTCTCAGTCCCGTGAAACTTTTCTGAAG  599

seq1  CCCAAGTAATTTTAAAGAACACATTTGAAGGACACATCAAGTTTTTATTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTAATTTTAAAGAACACATTTGAAGGACACATCAAGTTTTTATTG  649

seq1  CAGATGAAAGTTCAGGAGTTGCACCAAAGAGCTTGGACATTTGTTAGTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAAGTTCAGGAGTTGCACCAAAGAGCTTGGACATTTGTTAGTCT  699

seq1  GGTGGAGTAGCACATGACAAATCATCCAACTGTCCTTTGTACACCTGCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTAGCACATGACAAATCATCCAACTGTCCTTTGTACACCTGCAC  749

seq1  ACAGGGACACATCTCCAACACTCAAGGGAAGTTGGTCACATGTCCATCGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACACATCTCCAACACTCAAGGGAAGTTGGTCACATGTCCATCGT  799

seq1  GGCCTCTCTCTGTACACACACCTGGCCAGCCATGGGAACTTGGAACCAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTCTGTACACACACCTGGCCAGCCATGGGAACTTGGAACCAAG  849

seq1  CCCTCTAGAATTC  855
      |||||||||||||
seq2  CCCTCTAGAATTC  862